Wall clock time and date at job start Tue Mar 31 2020 06:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.62875 * 2 1 4 4 C 1.53250 * 109.62747 * 239.60638 * 2 1 3 5 5 N 1.46469 * 109.85618 * 178.29438 * 4 2 1 6 6 C 1.46905 * 110.99618 * 197.76859 * 5 4 2 7 7 C 1.50702 * 109.46926 * 169.99961 * 6 5 4 8 8 C 1.38636 * 119.75076 * 89.99790 * 7 6 5 9 9 C 1.37611 * 120.25151 * 180.02562 * 8 7 6 10 10 C 1.40722 * 119.74546 * 359.97438 * 9 8 7 11 11 C 1.41393 * 120.24478 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00196 * 335.04437 * 11 10 9 13 13 C 1.39943 * 119.99706 * 155.04512 * 11 10 9 14 14 N 1.30827 * 120.00209 * 334.23259 * 13 11 10 15 15 Si 1.86800 * 120.00120 * 154.23199 * 13 11 10 16 16 H 1.48509 * 109.46982 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47448 * 240.00124 * 15 13 11 18 18 H 1.48493 * 109.47269 * 119.99785 * 15 13 11 19 19 C 1.40719 * 119.50978 * 0.27869 * 10 9 8 20 20 C 1.37624 * 119.74119 * 359.42406 * 19 10 9 21 21 C 1.46458 * 112.56208 * 72.65750 * 5 4 2 22 22 C 1.53252 * 109.86180 * 287.34396 * 21 5 4 23 23 H 1.08998 * 109.79726 * 181.80252 * 22 21 5 24 24 C 1.53002 * 109.62808 * 302.29455 * 22 21 5 25 25 S 1.81896 * 109.62746 * 120.59436 * 2 1 3 26 26 H 1.08994 * 109.47653 * 180.39484 * 1 2 3 27 27 H 1.09005 * 109.46973 * 300.39586 * 1 2 3 28 28 H 1.09003 * 109.46644 * 60.38808 * 1 2 3 29 29 H 1.09003 * 109.40703 * 58.17515 * 4 2 1 30 30 H 1.08995 * 109.40857 * 298.41190 * 4 2 1 31 31 H 1.09000 * 109.47521 * 50.00010 * 6 5 4 32 32 H 1.08999 * 109.46593 * 289.99298 * 6 5 4 33 33 H 1.08002 * 119.87641 * 359.97438 * 8 7 6 34 34 H 1.08002 * 120.13009 * 180.02562 * 9 8 7 35 35 H 0.97000 * 119.99756 * 354.23951 * 14 13 11 36 36 H 1.08001 * 120.12862 * 179.70537 * 19 10 9 37 37 H 1.07998 * 119.87254 * 180.27721 * 20 19 10 38 38 H 1.09004 * 109.40809 * 47.46131 * 21 5 4 39 39 H 1.08998 * 109.41416 * 167.22206 * 21 5 4 40 40 H 1.09005 * 109.46790 * 179.01072 * 24 22 21 41 41 H 1.08993 * 109.47159 * 299.01312 * 24 22 21 42 42 H 1.09007 * 109.47301 * 59.01607 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0448 -0.7303 -1.2451 5 7 3.5089 -0.6980 -1.2710 6 6 4.0183 -0.9998 -2.6155 7 6 5.4982 -0.7194 -2.6666 8 6 6.3999 -1.7237 -2.3500 9 6 7.7534 -1.4789 -2.3927 10 6 8.2210 -0.2035 -2.7601 11 6 9.6094 0.0595 -2.8080 12 1 10.2909 -0.5258 -2.2085 13 6 10.1005 1.0783 -3.6322 14 7 9.4281 1.4420 -4.6939 15 14 11.7161 1.9189 -3.2165 16 1 12.2763 1.3280 -1.9745 17 1 11.4805 3.3707 -3.0120 18 1 12.6762 1.7256 -4.3327 19 6 7.2964 0.8098 -3.0742 20 6 5.9474 0.5405 -3.0306 21 6 4.1084 -1.5847 -0.2713 22 6 3.9230 -0.9909 1.1293 23 1 4.3973 -1.6355 1.8693 24 6 4.5514 0.4031 1.1838 25 16 2.1410 -0.8720 1.4748 26 1 -0.3634 -1.0275 0.0071 27 1 -0.3633 0.5200 0.8865 28 1 -0.3633 0.5078 -0.8935 29 1 1.6558 -0.2415 -2.1384 30 1 1.7058 -1.7660 -1.2236 31 1 3.5049 -0.3759 -3.3471 32 1 3.8395 -2.0504 -2.8443 33 1 6.0388 -2.7017 -2.0679 34 1 8.4542 -2.2628 -2.1461 35 1 8.6338 0.9512 -4.9566 36 1 7.6441 1.7936 -3.3527 37 1 5.2361 1.3153 -3.2756 38 1 3.6260 -2.5611 -0.3175 39 1 5.1724 -1.6977 -0.4788 40 1 4.4027 0.8300 2.1757 41 1 5.6188 0.3288 0.9764 42 1 4.0801 1.0436 0.4382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398990699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:00 Heat of formation + Delta-G solvation = 4.443123 kcal Electronic energy + Delta-G solvation = -21265.602503 eV Core-core repulsion = 18335.392082 eV Total energy + Delta-G solvation = -2930.210421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.85266 -37.32689 -34.29545 -33.77978 -32.54124 -30.03069 -29.41435 -26.94826 -26.76725 -24.68427 -22.85138 -21.91839 -21.22076 -20.42573 -19.78273 -17.95047 -16.84140 -15.48081 -15.41761 -14.87176 -14.70616 -14.49675 -14.21300 -14.04627 -13.71376 -13.57270 -12.78376 -12.65224 -12.33267 -12.28570 -12.20588 -12.09512 -11.86679 -11.58762 -11.41083 -11.25848 -11.12591 -11.01651 -10.80657 -10.50257 -10.43175 -10.30311 -9.67932 -9.56085 -9.45296 -8.99408 -8.12405 -7.71551 -7.61729 -7.52188 -7.20463 -4.46701 1.83196 2.56245 2.65614 2.84261 3.13828 3.22270 3.32591 3.99107 4.01691 4.56564 4.72191 4.88386 4.99594 5.11004 5.16986 5.33579 5.37868 5.49068 5.52351 5.61147 5.67652 5.75169 5.79899 5.87934 5.99612 6.00558 6.08453 6.11496 6.15584 6.18916 6.25137 6.54703 6.74674 6.97231 7.10794 7.24944 7.29956 7.36581 7.66234 7.73962 7.79622 7.94239 8.17319 8.28792 8.73007 8.86138 10.02072 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028320 B = 0.003725 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.469993 B = 7514.574208 C = 7746.314564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.041 4.041 3 H 0.095 0.905 4 C 0.059 3.941 5 N -0.542 5.542 6 C 0.127 3.873 7 C -0.221 4.221 8 C -0.074 4.074 9 C -0.229 4.229 10 C 0.101 3.899 11 C -0.522 4.522 12 H 0.075 0.925 13 C 0.040 3.960 14 N -0.797 5.797 15 Si 1.068 2.932 16 H -0.276 1.276 17 H -0.274 1.274 18 H -0.278 1.278 19 C -0.222 4.222 20 C -0.057 4.057 21 C 0.056 3.944 22 C -0.037 4.037 23 H 0.104 0.896 24 C -0.132 4.132 25 S -0.287 6.287 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.300 0.700 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.036 0.964 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.899 -2.261 6.491 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.170 4.170 3 H 0.113 0.887 4 C -0.071 4.071 5 N -0.266 5.266 6 C 0.001 3.999 7 C -0.223 4.223 8 C -0.093 4.093 9 C -0.249 4.249 10 C 0.098 3.902 11 C -0.550 4.550 12 H 0.093 0.907 13 C -0.182 4.182 14 N -0.420 5.420 15 Si 0.892 3.108 16 H -0.201 1.201 17 H -0.199 1.199 18 H -0.204 1.204 19 C -0.241 4.241 20 C -0.076 4.076 21 C -0.073 4.073 22 C -0.166 4.166 23 H 0.122 0.878 24 C -0.191 4.191 25 S -0.060 6.060 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.106 0.894 38 H 0.054 0.946 39 H 0.121 0.879 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.359 -0.952 6.979 13.366 hybrid contribution -0.622 -1.663 -0.685 1.903 sum -11.981 -2.615 6.295 13.784 Atomic orbital electron populations 1.21593 0.92172 1.02760 1.02507 1.23170 0.98238 1.01754 0.93886 0.88685 1.22282 0.88824 0.98919 0.97049 1.61207 1.04668 1.54352 1.06350 1.20666 0.93985 0.97574 0.87655 1.18751 0.91933 0.95624 1.15980 1.20388 0.93525 0.96282 0.99123 1.20889 0.93922 0.96588 1.13488 1.17670 0.93343 0.90357 0.88849 1.20623 0.92949 1.17063 1.24376 0.90707 1.27001 1.04563 0.94430 0.92243 1.70403 1.16158 1.36838 1.18586 0.83607 0.73588 0.76872 0.76732 1.20129 1.19918 1.20404 1.21136 0.92402 0.98773 1.11838 1.20393 0.94874 0.94668 0.97650 1.22314 1.02472 0.92809 0.89717 1.23253 0.92086 1.01457 0.99786 0.87800 1.21857 1.01268 0.94367 1.01630 1.86685 1.09609 1.77529 1.32218 0.91894 0.91755 0.91208 0.90212 0.94102 0.91496 0.95762 0.89756 0.89093 0.88652 0.87834 0.89395 0.94571 0.87906 0.92862 0.91598 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.23 37.16 0.34 -0.89 16 2 C -0.04 -0.49 2.98 -26.60 -0.08 -0.57 16 3 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 4 C 0.06 0.75 4.72 -3.93 -0.02 0.73 16 5 N -0.54 -8.16 3.56 -236.48 -0.84 -9.00 16 6 C 0.13 2.09 5.12 -4.97 -0.03 2.07 16 7 C -0.22 -4.46 4.91 -104.33 -0.51 -4.97 16 8 C -0.07 -1.56 7.73 -39.66 -0.31 -1.87 16 9 C -0.23 -5.43 9.80 -38.87 -0.38 -5.81 16 10 C 0.10 2.60 5.30 -106.82 -0.57 2.03 16 11 C -0.52 -13.69 8.99 -37.74 -0.34 -14.02 16 12 H 0.07 1.93 7.96 -52.49 -0.42 1.51 16 13 C 0.04 0.99 4.93 -17.34 -0.09 0.91 16 14 N -0.80 -20.91 12.31 55.55 0.68 -20.22 16 15 Si 1.07 21.44 30.00 -169.99 -5.10 16.34 16 16 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 19 C -0.22 -5.52 7.96 -38.87 -0.31 -5.83 16 20 C -0.06 -1.26 9.67 -39.66 -0.38 -1.64 16 21 C 0.06 0.84 4.73 -3.93 -0.02 0.83 16 22 C -0.04 -0.51 3.49 -26.60 -0.09 -0.61 16 23 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 24 C -0.13 -1.92 8.98 37.16 0.33 -1.59 16 25 S -0.29 -3.85 21.18 -107.50 -2.28 -6.12 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.92 7.76 -51.93 -0.40 0.52 16 30 H 0.04 0.52 7.91 -51.93 -0.41 0.11 16 31 H 0.07 1.05 7.77 -51.93 -0.40 0.65 16 32 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.08 1.58 7.74 -52.49 -0.41 1.17 16 34 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 35 H 0.30 8.07 6.70 -40.82 -0.27 7.79 16 36 H 0.10 2.70 6.49 -52.49 -0.34 2.35 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.04 0.53 7.92 -51.93 -0.41 0.12 16 39 H 0.10 1.75 4.94 -51.93 -0.26 1.49 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 1.11 6.69 -51.92 -0.35 0.76 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -25.95 339.41 -11.52 -37.48 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.66 Total: 7.66 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: -2.44 Total: -31.25 kcal Atomic # 7 Polarization: -29.07 SS G_CDS: -0.16 Total: -29.22 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.10 Total: 16.34 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -2.28 Total: -6.12 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -25.95 -11.52 -37.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398990699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.920 kcal (2) G-P(sol) polarization free energy of solvation -25.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds