Wall clock time and date at job start Tue Mar 31 2020 06:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.62875 * 2 1 4 4 C 1.53250 * 109.62747 * 239.60638 * 2 1 3 5 5 N 1.46469 * 109.85618 * 178.29438 * 4 2 1 6 6 C 1.46905 * 110.99618 * 197.76859 * 5 4 2 7 7 C 1.50702 * 109.46926 * 169.99961 * 6 5 4 8 8 C 1.38636 * 119.75076 * 89.99790 * 7 6 5 9 9 C 1.37611 * 120.25151 * 180.02562 * 8 7 6 10 10 C 1.40722 * 119.74546 * 359.97438 * 9 8 7 11 11 C 1.41393 * 120.24478 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00196 * 335.04437 * 11 10 9 13 13 C 1.39943 * 119.99706 * 155.04512 * 11 10 9 14 14 N 1.30827 * 120.00209 * 334.23259 * 13 11 10 15 15 Si 1.86800 * 120.00120 * 154.23199 * 13 11 10 16 16 H 1.48509 * 109.46982 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47448 * 240.00124 * 15 13 11 18 18 H 1.48493 * 109.47269 * 119.99785 * 15 13 11 19 19 C 1.40719 * 119.50978 * 0.27869 * 10 9 8 20 20 C 1.37624 * 119.74119 * 359.42406 * 19 10 9 21 21 C 1.46458 * 112.56208 * 72.65750 * 5 4 2 22 22 C 1.53252 * 109.86180 * 287.34396 * 21 5 4 23 23 H 1.08998 * 109.79726 * 181.80252 * 22 21 5 24 24 C 1.53002 * 109.62808 * 302.29455 * 22 21 5 25 25 S 1.81896 * 109.62746 * 120.59436 * 2 1 3 26 26 H 1.08994 * 109.47653 * 180.39484 * 1 2 3 27 27 H 1.09005 * 109.46973 * 300.39586 * 1 2 3 28 28 H 1.09003 * 109.46644 * 60.38808 * 1 2 3 29 29 H 1.09003 * 109.40703 * 58.17515 * 4 2 1 30 30 H 1.08995 * 109.40857 * 298.41190 * 4 2 1 31 31 H 1.09000 * 109.47521 * 50.00010 * 6 5 4 32 32 H 1.08999 * 109.46593 * 289.99298 * 6 5 4 33 33 H 1.08002 * 119.87641 * 359.97438 * 8 7 6 34 34 H 1.08002 * 120.13009 * 180.02562 * 9 8 7 35 35 H 0.97000 * 119.99756 * 354.23951 * 14 13 11 36 36 H 1.08001 * 120.12862 * 179.70537 * 19 10 9 37 37 H 1.07998 * 119.87254 * 180.27721 * 20 19 10 38 38 H 1.09004 * 109.40809 * 47.46131 * 21 5 4 39 39 H 1.08998 * 109.41416 * 167.22206 * 21 5 4 40 40 H 1.09005 * 109.46790 * 179.01072 * 24 22 21 41 41 H 1.08993 * 109.47159 * 299.01312 * 24 22 21 42 42 H 1.09007 * 109.47301 * 59.01607 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0448 -0.7303 -1.2451 5 7 3.5089 -0.6980 -1.2710 6 6 4.0183 -0.9998 -2.6155 7 6 5.4982 -0.7194 -2.6666 8 6 6.3999 -1.7237 -2.3500 9 6 7.7534 -1.4789 -2.3927 10 6 8.2210 -0.2035 -2.7601 11 6 9.6094 0.0595 -2.8080 12 1 10.2909 -0.5258 -2.2085 13 6 10.1005 1.0783 -3.6322 14 7 9.4281 1.4420 -4.6939 15 14 11.7161 1.9189 -3.2165 16 1 12.2763 1.3280 -1.9745 17 1 11.4805 3.3707 -3.0120 18 1 12.6762 1.7256 -4.3327 19 6 7.2964 0.8098 -3.0742 20 6 5.9474 0.5405 -3.0306 21 6 4.1084 -1.5847 -0.2713 22 6 3.9230 -0.9909 1.1293 23 1 4.3973 -1.6355 1.8693 24 6 4.5514 0.4031 1.1838 25 16 2.1410 -0.8720 1.4748 26 1 -0.3634 -1.0275 0.0071 27 1 -0.3633 0.5200 0.8865 28 1 -0.3633 0.5078 -0.8935 29 1 1.6558 -0.2415 -2.1384 30 1 1.7058 -1.7660 -1.2236 31 1 3.5049 -0.3759 -3.3471 32 1 3.8395 -2.0504 -2.8443 33 1 6.0388 -2.7017 -2.0679 34 1 8.4542 -2.2628 -2.1461 35 1 8.6338 0.9512 -4.9566 36 1 7.6441 1.7936 -3.3527 37 1 5.2361 1.3153 -3.2756 38 1 3.6260 -2.5611 -0.3175 39 1 5.1724 -1.6977 -0.4788 40 1 4.4027 0.8300 2.1757 41 1 5.6188 0.3288 0.9764 42 1 4.0801 1.0436 0.4382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398990699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:58 Heat of formation + Delta-G solvation = -6.518042 kcal Electronic energy + Delta-G solvation = -21266.077815 eV Core-core repulsion = 18335.392082 eV Total energy + Delta-G solvation = -2930.685733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.29909 -38.88443 -35.97965 -34.84399 -33.87283 -31.70366 -31.17813 -28.48781 -27.85948 -26.17185 -24.26679 -23.13104 -22.80498 -21.88619 -21.21561 -19.83416 -17.89975 -16.82559 -16.65363 -16.41023 -16.18854 -15.77540 -15.66780 -15.46529 -15.28072 -14.67995 -14.24520 -14.03825 -13.80780 -13.69323 -13.63694 -13.43647 -13.01301 -12.92229 -12.75806 -12.56514 -12.46425 -12.22962 -12.16224 -12.07661 -11.95647 -11.52415 -11.40497 -11.27507 -10.84988 -10.58658 -9.57012 -9.45774 -9.22358 -9.13817 -8.68046 -6.43847 0.80093 0.88174 0.97504 1.49177 1.53061 1.62077 1.77760 2.31993 2.58480 2.95541 3.60149 3.73722 3.76864 3.99765 4.04910 4.12936 4.22545 4.26092 4.31992 4.44409 4.50996 4.56067 4.61838 4.70347 4.73704 4.81642 4.84080 4.88462 4.93260 4.94272 5.01269 5.13785 5.22087 5.25763 5.32826 5.45612 5.75425 5.80973 5.85030 5.98543 6.13916 6.21075 6.28426 6.43226 6.82030 6.95949 8.04951 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028320 B = 0.003725 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.469993 B = 7514.574208 C = 7746.314564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.037 4.037 3 H 0.086 0.914 4 C 0.061 3.939 5 N -0.550 5.550 6 C 0.131 3.869 7 C -0.197 4.197 8 C -0.070 4.070 9 C -0.245 4.245 10 C 0.073 3.927 11 C -0.563 4.563 12 H 0.067 0.933 13 C 0.005 3.995 14 N -0.820 5.820 15 Si 1.118 2.882 16 H -0.266 1.266 17 H -0.267 1.267 18 H -0.266 1.266 19 C -0.238 4.238 20 C -0.062 4.062 21 C 0.060 3.940 22 C -0.037 4.037 23 H 0.112 0.888 24 C -0.124 4.124 25 S -0.294 6.294 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.284 0.716 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.154 -2.650 7.066 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 H 0.105 0.895 4 C -0.068 4.068 5 N -0.274 5.274 6 C 0.005 3.995 7 C -0.199 4.199 8 C -0.089 4.089 9 C -0.264 4.264 10 C 0.070 3.930 11 C -0.591 4.591 12 H 0.085 0.915 13 C -0.211 4.211 14 N -0.443 5.443 15 Si 0.935 3.065 16 H -0.190 1.190 17 H -0.192 1.192 18 H -0.191 1.191 19 C -0.258 4.258 20 C -0.081 4.081 21 C -0.069 4.069 22 C -0.166 4.166 23 H 0.130 0.870 24 C -0.183 4.183 25 S -0.067 6.067 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.638 -1.357 7.562 15.653 hybrid contribution -0.178 -1.641 -0.793 1.831 sum -13.816 -2.998 6.768 15.674 Atomic orbital electron populations 1.21584 0.89978 1.03287 1.03617 1.23247 0.99884 1.00799 0.92649 0.89537 1.22349 0.86820 0.99552 0.98100 1.61092 1.06480 1.54510 1.05358 1.20610 0.91108 0.98763 0.89001 1.19200 0.94400 0.94224 1.12074 1.20676 0.92467 0.97820 0.97893 1.21077 0.95464 0.95991 1.13895 1.17960 0.93710 0.91470 0.89852 1.20781 0.93429 1.18967 1.25969 0.91525 1.28341 1.07061 0.94460 0.91208 1.70518 1.16460 1.37577 1.19769 0.83002 0.70059 0.76177 0.77239 1.19005 1.19163 1.19077 1.21078 0.93720 0.97887 1.13083 1.20641 0.94019 0.96127 0.97322 1.22239 1.01133 0.93303 0.90270 1.23194 0.92987 1.00935 0.99488 0.87031 1.21756 0.99850 0.94822 1.01842 1.86751 1.08626 1.77740 1.33562 0.91605 0.91505 0.89270 0.88516 0.93589 0.89995 0.94426 0.86887 0.89051 0.90419 0.89934 0.87569 0.93854 0.90090 0.91746 0.93549 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 9.23 71.98 0.66 -1.25 16 2 C -0.04 -0.76 2.98 30.68 0.09 -0.67 16 3 H 0.09 1.99 7.58 -2.38 -0.02 1.97 16 4 C 0.06 1.31 4.72 86.47 0.41 1.72 16 5 N -0.55 -15.00 3.56 -902.09 -3.21 -18.21 16 6 C 0.13 3.90 5.12 85.56 0.44 4.34 16 7 C -0.20 -7.64 4.91 -19.67 -0.10 -7.73 16 8 C -0.07 -2.85 7.73 22.22 0.17 -2.68 16 9 C -0.24 -11.78 9.80 22.73 0.22 -11.56 16 10 C 0.07 3.89 5.30 -21.29 -0.11 3.78 16 11 C -0.56 -30.91 8.99 23.46 0.21 -30.70 16 12 H 0.07 3.61 7.96 -2.91 -0.02 3.59 16 13 C 0.01 0.27 4.93 85.26 0.42 0.69 16 14 N -0.82 -44.81 12.31 21.83 0.27 -44.54 16 15 Si 1.12 44.08 30.00 68.60 2.06 46.14 16 16 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 17 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 18 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 19 C -0.24 -12.23 7.96 22.73 0.18 -12.05 16 20 C -0.06 -2.73 9.67 22.22 0.21 -2.51 16 21 C 0.06 1.67 4.73 86.47 0.41 2.08 16 22 C -0.04 -0.97 3.49 30.68 0.11 -0.86 16 23 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 24 C -0.12 -3.48 8.98 71.98 0.65 -2.84 16 25 S -0.29 -7.15 21.18 -56.49 -1.20 -8.35 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 1.81 7.76 -2.39 -0.02 1.79 16 30 H 0.05 0.99 7.91 -2.39 -0.02 0.97 16 31 H 0.08 2.24 7.77 -2.39 -0.02 2.22 16 32 H 0.04 1.05 8.08 -2.39 -0.02 1.03 16 33 H 0.11 3.96 7.74 -2.91 -0.02 3.93 16 34 H 0.09 4.27 8.06 -2.91 -0.02 4.25 16 35 H 0.28 16.09 6.70 -92.71 -0.62 15.47 16 36 H 0.08 4.52 6.49 -2.91 -0.02 4.50 16 37 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 38 H 0.04 1.15 7.92 -2.39 -0.02 1.13 16 39 H 0.08 2.61 4.94 -2.39 -0.01 2.60 16 40 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 42 H 0.06 1.78 6.69 -2.38 -0.02 1.77 16 Total: -1.00 -57.85 339.41 3.02 -54.82 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 1.13 Total: 30.39 kcal Atomic # 6 Polarization: -64.23 SS G_CDS: 3.98 Total: -60.25 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -2.95 Total: -62.75 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.06 Total: 46.14 kcal Atomic # 16 Polarization: -7.15 SS G_CDS: -1.20 Total: -8.35 kcal Total: -57.85 3.02 -54.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398990699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.306 kcal (2) G-P(sol) polarization free energy of solvation -57.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds