Wall clock time and date at job start Tue Mar 31 2020 06:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.63201 * 2 1 4 4 C 1.53251 * 109.63190 * 120.38783 * 2 1 3 5 5 N 1.46473 * 109.85955 * 181.70889 * 4 2 1 6 6 C 1.46899 * 110.99826 * 162.23696 * 5 4 2 7 7 C 1.50704 * 109.46995 * 170.00263 * 6 5 4 8 8 C 1.38632 * 119.74516 * 269.72616 * 7 6 5 9 9 C 1.37622 * 120.24708 * 179.72257 * 8 7 6 10 10 C 1.40714 * 119.74266 * 0.56911 * 9 8 7 11 11 C 1.41394 * 120.24180 * 179.68088 * 10 9 8 12 12 H 1.07998 * 119.99814 * 204.39862 * 11 10 9 13 13 C 1.39939 * 120.00116 * 24.40458 * 11 10 9 14 14 N 1.30827 * 120.00269 * 17.85587 * 13 11 10 15 15 Si 1.86804 * 119.99949 * 197.85518 * 13 11 10 16 16 H 1.48495 * 109.47337 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47229 * 119.99976 * 15 13 11 18 18 H 1.48501 * 109.46951 * 239.99739 * 15 13 11 19 19 C 1.40716 * 119.51322 * 359.70405 * 10 9 8 20 20 C 1.37621 * 119.74433 * 0.02562 * 19 10 9 21 21 C 1.46466 * 112.55827 * 287.34559 * 5 4 2 22 22 C 1.53246 * 109.86385 * 72.65511 * 21 5 4 23 23 H 1.08993 * 109.63241 * 178.29241 * 22 21 5 24 24 C 1.52998 * 109.62865 * 57.70189 * 22 21 5 25 25 S 1.81898 * 109.63226 * 239.40138 * 2 1 3 26 26 H 1.09007 * 109.47074 * 299.61290 * 1 2 3 27 27 H 1.09000 * 109.46977 * 179.61447 * 1 2 3 28 28 H 1.09004 * 109.47023 * 59.61061 * 1 2 3 29 29 H 1.09004 * 109.40758 * 301.82683 * 4 2 1 30 30 H 1.09004 * 109.40547 * 61.67087 * 4 2 1 31 31 H 1.09004 * 109.47286 * 289.99815 * 6 5 4 32 32 H 1.08999 * 109.47283 * 49.99697 * 6 5 4 33 33 H 1.08002 * 119.87643 * 359.97292 * 8 7 6 34 34 H 1.08002 * 120.12522 * 180.27121 * 9 8 7 35 35 H 0.96995 * 120.00232 * 180.02562 * 14 13 11 36 36 H 1.08002 * 120.12629 * 179.97438 * 19 10 9 37 37 H 1.07999 * 119.87488 * 179.97438 * 20 19 10 38 38 H 1.08999 * 109.40350 * 192.78103 * 21 5 4 39 39 H 1.09004 * 109.40285 * 312.61356 * 21 5 4 40 40 H 1.09002 * 109.47119 * 59.99577 * 24 22 21 41 41 H 1.09000 * 109.47613 * 180.02562 * 24 22 21 42 42 H 1.09005 * 109.47559 * 300.00160 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0448 -0.7302 1.2451 5 7 3.5090 -0.6978 1.2711 6 6 4.0184 -0.9995 2.6155 7 6 5.5109 -1.1993 2.5540 8 6 6.0266 -2.4666 2.3305 9 6 7.3876 -2.6599 2.2667 10 6 8.2568 -1.5671 2.4412 11 6 9.6571 -1.7549 2.3845 12 1 10.3157 -1.0610 2.8856 13 6 10.1896 -2.8397 1.6788 14 7 9.4567 -3.4700 0.7973 15 14 11.9471 -3.3879 1.9956 16 1 12.5583 -2.5168 3.0313 17 1 11.9490 -4.7956 2.4681 18 1 12.7313 -3.2866 0.7386 19 6 7.7223 -0.2863 2.6731 20 6 6.3578 -0.1155 2.7274 21 6 4.1084 -1.5845 0.2713 22 6 3.9230 -0.9908 -1.1292 23 1 4.3967 -1.6383 -1.8671 24 6 4.5513 0.4031 -1.1839 25 16 2.1411 -0.8721 -1.4747 26 1 -0.3633 0.5078 0.8935 27 1 -0.3633 -1.0276 -0.0069 28 1 -0.3633 0.5199 -0.8865 29 1 1.6559 -0.2414 2.1384 30 1 1.7070 -1.7663 1.2230 31 1 3.7902 -0.1703 3.2852 32 1 3.5452 -1.9081 2.9879 33 1 5.3576 -3.3047 2.2020 34 1 7.7872 -3.6473 2.0882 35 1 9.8256 -4.2221 0.3085 36 1 8.3803 0.5593 2.8088 37 1 5.9452 0.8665 2.9056 38 1 5.1725 -1.6974 0.4790 39 1 3.6251 -2.5605 0.3167 40 1 5.6154 0.3311 -0.9592 41 1 4.4176 0.8232 -2.1808 42 1 4.0680 1.0486 -0.4503 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398990700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:03 Heat of formation + Delta-G solvation = 1.723943 kcal Electronic energy + Delta-G solvation = -21361.657268 eV Core-core repulsion = 18431.328934 eV Total energy + Delta-G solvation = -2930.328334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.31470 -38.65188 -35.75215 -34.80532 -33.88460 -31.70812 -31.16317 -28.61583 -27.83572 -26.19440 -24.21036 -23.05542 -22.77297 -21.80530 -21.01876 -19.21768 -17.88927 -17.17442 -16.66156 -16.55820 -15.92483 -15.79552 -15.61562 -15.30626 -15.13700 -14.63518 -14.28378 -13.84152 -13.73248 -13.68353 -13.45670 -13.36336 -13.01631 -12.92196 -12.73078 -12.67725 -12.48894 -12.34842 -12.16006 -12.07610 -12.01983 -11.45949 -11.31565 -11.24840 -10.99879 -10.55831 -9.39665 -9.28846 -9.10170 -8.66641 -8.63909 -6.33032 0.82005 0.92480 1.16427 1.37352 1.47891 1.52067 1.55969 2.19845 2.63261 3.01252 3.75696 3.78010 3.81584 4.02862 4.08789 4.17768 4.25986 4.35348 4.38789 4.53442 4.58166 4.65101 4.66077 4.76294 4.82742 4.86833 4.88812 4.97797 5.02959 5.04373 5.07552 5.16668 5.24994 5.33479 5.38172 5.47493 5.70881 5.94628 6.02177 6.10680 6.23634 6.27616 6.40407 6.70790 6.95135 7.04233 8.31982 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028133 B = 0.003945 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.025766 B = 7096.443138 C = 7524.052956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.034 4.034 3 H 0.093 0.907 4 C 0.059 3.941 5 N -0.544 5.544 6 C 0.129 3.871 7 C -0.200 4.200 8 C -0.093 4.093 9 C -0.188 4.188 10 C 0.083 3.917 11 C -0.501 4.501 12 H 0.073 0.927 13 C 0.037 3.963 14 N -0.823 5.823 15 Si 0.978 3.022 16 H -0.259 1.259 17 H -0.265 1.265 18 H -0.266 1.266 19 C -0.244 4.244 20 C -0.067 4.067 21 C 0.061 3.939 22 C -0.038 4.038 23 H 0.099 0.901 24 C -0.120 4.120 25 S -0.300 6.300 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.033 0.967 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.287 0.713 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.029 0.971 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.559 4.210 -0.912 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.163 4.163 3 H 0.112 0.888 4 C -0.070 4.070 5 N -0.268 5.268 6 C 0.003 3.997 7 C -0.201 4.201 8 C -0.112 4.112 9 C -0.208 4.208 10 C 0.081 3.919 11 C -0.531 4.531 12 H 0.091 0.909 13 C -0.178 4.178 14 N -0.449 5.449 15 Si 0.799 3.201 16 H -0.182 1.182 17 H -0.189 1.189 18 H -0.191 1.191 19 C -0.264 4.264 20 C -0.086 4.086 21 C -0.068 4.068 22 C -0.167 4.167 23 H 0.117 0.883 24 C -0.179 4.179 25 S -0.073 6.073 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.100 0.900 39 H 0.047 0.953 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.018 4.116 -2.112 14.762 hybrid contribution 1.679 -0.946 0.982 2.163 sum -12.339 3.170 -1.130 12.790 Atomic orbital electron populations 1.21588 0.89924 1.03162 1.03778 1.23261 0.99865 1.00908 0.92237 0.88842 1.22376 0.86928 0.99323 0.98370 1.61253 1.06446 1.53788 1.05321 1.20697 0.90472 0.99583 0.88929 1.19195 0.94443 0.93003 1.13477 1.20689 0.94393 0.96120 0.99982 1.21208 0.92856 0.98499 1.08203 1.17925 0.93850 0.91469 0.88640 1.19864 0.92734 1.10283 1.30199 0.90927 1.26699 1.04261 0.94712 0.92099 1.69877 1.40022 1.17925 1.17105 0.85219 0.76710 0.78870 0.79295 1.18246 1.18924 1.19113 1.21155 0.95195 0.95854 1.14199 1.20602 0.92470 0.97452 0.98054 1.22244 1.01418 0.92828 0.90317 1.23183 0.92989 1.01233 0.99310 0.88257 1.21735 0.99815 0.94325 1.02042 1.86746 1.08663 1.78094 1.33794 0.88892 0.91971 0.91412 0.87895 0.94296 0.89436 0.94891 0.88638 0.88535 0.90251 0.88912 0.86779 0.89956 0.95272 0.93641 0.91701 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.23 71.98 0.66 -1.31 16 2 C -0.03 -0.72 2.97 30.68 0.09 -0.63 16 3 H 0.09 2.08 7.55 -2.38 -0.02 2.06 16 4 C 0.06 1.35 4.68 86.47 0.40 1.76 16 5 N -0.54 -15.77 3.73 -902.06 -3.37 -19.13 16 6 C 0.13 3.98 5.34 85.56 0.46 4.44 16 7 C -0.20 -7.90 4.12 -19.67 -0.08 -7.98 16 8 C -0.09 -4.12 7.57 22.22 0.17 -3.95 16 9 C -0.19 -9.73 8.70 22.73 0.20 -9.54 16 10 C 0.08 4.47 5.57 -21.29 -0.12 4.35 16 11 C -0.50 -27.13 9.05 23.46 0.21 -26.91 16 12 H 0.07 3.83 7.91 -2.91 -0.02 3.80 16 13 C 0.04 1.88 5.14 85.25 0.44 2.32 16 14 N -0.82 -43.03 10.95 21.83 0.24 -42.79 16 15 Si 0.98 38.36 29.60 68.60 2.03 40.39 16 16 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 17 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 18 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 19 C -0.24 -11.82 9.80 22.73 0.22 -11.60 16 20 C -0.07 -2.81 9.67 22.22 0.21 -2.59 16 21 C 0.06 2.03 4.32 86.47 0.37 2.40 16 22 C -0.04 -1.16 3.49 30.68 0.11 -1.05 16 23 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 24 C -0.12 -3.57 8.97 71.98 0.65 -2.93 16 25 S -0.30 -8.07 21.18 -56.49 -1.20 -9.26 16 26 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 1.91 7.96 -2.38 -0.02 1.89 16 30 H 0.04 0.94 7.91 -2.39 -0.02 0.92 16 31 H 0.09 2.39 8.08 -2.38 -0.02 2.37 16 32 H 0.03 0.98 8.01 -2.39 -0.02 0.96 16 33 H 0.10 3.91 8.06 -2.91 -0.02 3.88 16 34 H 0.10 5.31 6.16 -2.91 -0.02 5.29 16 35 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 36 H 0.09 4.32 8.06 -2.91 -0.02 4.29 16 37 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 38 H 0.08 3.32 4.77 -2.39 -0.01 3.31 16 39 H 0.03 0.98 7.91 -2.39 -0.02 0.96 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 1.99 6.68 -2.38 -0.02 1.97 16 Total: -1.00 -56.61 339.68 2.69 -53.92 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.98 Total: 30.10 kcal Atomic # 6 Polarization: -57.23 SS G_CDS: 4.00 Total: -53.23 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -3.13 Total: -61.92 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.20 Total: -9.26 kcal Total: -56.61 2.69 -53.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398990700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.643 kcal (2) G-P(sol) polarization free energy of solvation -56.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds