Wall clock time and date at job start Tue Mar 31 2020 07:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86796 * 120.00381 * 2 1 4 4 H 1.48497 * 109.47620 * 240.00811 * 3 2 1 5 5 H 1.48504 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46993 * 120.00329 * 3 2 1 7 7 C 1.39944 * 119.99661 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00096 * 162.28774 * 7 2 1 9 9 C 1.41398 * 120.00134 * 342.55151 * 7 2 1 10 10 C 1.40714 * 120.24287 * 155.02246 * 9 7 2 11 11 C 1.37621 * 119.74148 * 179.74373 * 10 9 7 12 12 C 1.38631 * 120.24964 * 0.53822 * 11 10 9 13 13 C 1.50698 * 119.75135 * 179.69027 * 12 11 10 14 14 N 1.46895 * 109.47502 * 270.02892 * 13 12 11 15 15 C 1.46851 * 111.00257 * 45.78725 * 14 13 12 16 16 C 1.53031 * 109.52370 * 185.84271 * 15 14 13 17 17 C 1.53122 * 109.27748 * 300.81899 * 16 15 14 18 18 O 1.42892 * 109.52346 * 297.74828 * 17 16 15 19 19 C 1.53005 * 109.51937 * 177.55897 * 17 16 15 20 20 O 1.42900 * 109.46879 * 60.32235 * 19 17 16 21 21 C 1.53119 * 109.15882 * 57.65828 * 17 16 15 22 22 C 1.46847 * 111.00020 * 169.99810 * 14 13 12 23 23 C 1.38634 * 120.50098 * 359.71965 * 12 11 10 24 24 C 1.37624 * 120.24825 * 0.02562 * 23 12 11 25 25 H 0.97001 * 119.99746 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.13270 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.87054 * 180.27710 * 11 10 9 28 28 H 1.09010 * 109.46496 * 30.02504 * 13 12 11 29 29 H 1.09001 * 109.47113 * 150.02266 * 13 12 11 30 30 H 1.08999 * 109.46006 * 305.86007 * 15 14 13 31 31 H 1.08999 * 109.45832 * 65.82520 * 15 14 13 32 32 H 1.09002 * 109.50145 * 180.87965 * 16 15 14 33 33 H 1.08999 * 109.50562 * 60.76212 * 16 15 14 34 34 H 0.96701 * 114.00146 * 299.68703 * 18 17 16 35 35 H 1.09006 * 109.46714 * 180.31844 * 19 17 16 36 36 H 1.08997 * 109.47273 * 300.31270 * 19 17 16 37 37 H 0.96707 * 113.99595 * 179.97438 * 20 19 17 38 38 H 1.09004 * 109.50207 * 182.40737 * 21 17 16 39 39 H 1.08996 * 109.50969 * 62.28793 * 21 17 16 40 40 H 1.08996 * 109.46159 * 294.17353 * 22 14 13 41 41 H 1.08999 * 109.46355 * 54.14482 * 22 14 13 42 42 H 1.07992 * 119.87753 * 179.97438 * 23 12 11 43 43 H 1.07993 * 120.12560 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2774 2.7465 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0495 -1.2341 -0.2851 9 6 1.3496 -2.4085 0.3661 10 6 1.8187 -3.6486 -0.1053 11 6 1.1734 -4.8072 0.2623 12 6 0.0585 -4.7548 1.0846 13 6 -0.6437 -6.0299 1.4745 14 7 -1.6877 -6.3356 0.4873 15 6 -1.1808 -6.1755 -0.8816 16 6 -2.3287 -6.3589 -1.8768 17 6 -2.9356 -7.7532 -1.6971 18 8 -1.9479 -8.7447 -1.9858 19 6 -4.1229 -7.9204 -2.6475 20 8 -3.6771 -7.7726 -3.9971 21 6 -3.4119 -7.9114 -0.2505 22 6 -2.2325 -7.6829 0.6976 23 6 -0.4156 -3.5382 1.5506 24 6 0.2171 -2.3674 1.2001 25 1 -0.4850 0.8401 0.0004 26 1 2.6841 -3.6913 -0.7501 27 1 1.5343 -5.7604 -0.0947 28 1 0.0774 -6.8468 1.5055 29 1 -1.0978 -5.9085 2.4579 30 1 -0.7557 -5.1785 -0.9971 31 1 -0.4108 -6.9228 -1.0734 32 1 -1.9491 -6.2555 -2.8933 33 1 -3.0927 -5.6032 -1.6944 34 1 -1.6010 -8.7034 -2.8875 35 1 -4.5577 -8.9111 -2.5149 36 1 -4.8739 -7.1616 -2.4276 37 1 -4.3790 -7.8670 -4.6557 38 1 -3.8061 -8.9172 -0.1050 39 1 -4.1930 -7.1802 -0.0425 40 1 -1.4576 -8.4231 0.4984 41 1 -2.5714 -7.7808 1.7290 42 1 -1.2851 -3.5091 2.1904 43 1 -0.1542 -1.4208 1.5639 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399008816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:39 Heat of formation + Delta-G solvation = -86.012340 kcal Electronic energy + Delta-G solvation = -23629.861975 eV Core-core repulsion = 20252.976239 eV Total energy + Delta-G solvation = -3376.885736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.75639 -37.91393 -36.64480 -35.48058 -33.76219 -32.21980 -30.66955 -30.03061 -29.18665 -27.59005 -25.62235 -23.53503 -22.87747 -21.44523 -20.92471 -19.82610 -19.43921 -17.60691 -17.26743 -16.35055 -15.91925 -15.31230 -15.01237 -14.74565 -14.55694 -14.39146 -13.95086 -13.65270 -13.35689 -13.24109 -12.60932 -12.48153 -12.41724 -12.04946 -11.89919 -11.62784 -11.44955 -11.21498 -11.04002 -10.99569 -10.90286 -10.85418 -10.45263 -10.39756 -10.31162 -10.07335 -9.63635 -9.47624 -9.33268 -9.08690 -7.81397 -7.41353 -7.21990 -6.73524 -4.32759 2.77318 3.07227 3.09969 3.10075 3.20560 3.92840 3.94451 4.19305 4.42807 4.73477 4.77083 4.87543 5.04087 5.28700 5.31226 5.40690 5.62034 5.71728 5.73574 5.83583 5.85623 5.93408 5.97564 6.07845 6.18504 6.30593 6.31283 6.39647 6.46908 6.55087 6.65382 6.98937 7.09528 7.32799 7.34311 7.38258 7.58938 7.62250 7.64697 7.71732 7.92083 8.07876 8.17719 8.32915 8.67178 8.92009 9.00490 10.20664 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023280 B = 0.003636 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.435704 B = 7698.701370 C = 8213.874304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.113 3.887 10 C -0.227 4.227 11 C -0.084 4.084 12 C -0.213 4.213 13 C 0.120 3.880 14 N -0.534 5.534 15 C 0.060 3.940 16 C -0.135 4.135 17 C 0.136 3.864 18 O -0.556 6.556 19 C 0.050 3.950 20 O -0.571 6.571 21 C -0.099 4.099 22 C 0.059 3.941 23 C -0.080 4.080 24 C -0.168 4.168 25 H 0.280 0.720 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.022 0.978 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.379 0.621 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.380 0.620 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.366 -11.911 -3.160 14.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.110 3.890 10 C -0.247 4.247 11 C -0.103 4.103 12 C -0.215 4.215 13 C -0.006 4.006 14 N -0.259 5.259 15 C -0.067 4.067 16 C -0.173 4.173 17 C 0.095 3.905 18 O -0.363 6.363 19 C -0.028 4.028 20 O -0.377 6.377 21 C -0.137 4.137 22 C -0.069 4.069 23 C -0.099 4.099 24 C -0.187 4.187 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.227 0.773 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.227 0.773 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.506 -11.497 -2.178 14.466 hybrid contribution 0.413 0.294 -1.109 1.219 sum -8.093 -11.202 -3.287 14.205 Atomic orbital electron populations 1.69825 1.07544 1.29241 1.35113 1.25891 0.94701 1.01221 0.92280 0.86393 0.80168 0.80349 0.79947 1.19055 1.20354 1.18855 1.19567 0.98013 0.91320 1.40516 0.90592 1.17607 0.91125 0.91914 0.88323 1.20943 1.03870 0.92927 1.06913 1.20374 0.95740 0.96235 0.97910 1.18883 1.00434 0.93145 1.09000 1.20724 0.90788 0.94781 0.94284 1.62124 1.35357 1.24733 1.03641 1.22066 0.94866 1.02628 0.87163 1.22182 0.99557 0.95908 0.99654 1.21302 0.86783 0.88788 0.93614 1.86453 1.58272 1.55415 1.36118 1.22967 0.97305 0.99902 0.82595 1.86415 1.39624 1.95681 1.15979 1.21522 0.98665 1.01837 0.91658 1.21928 0.96221 0.90366 0.98406 1.20501 0.97766 0.92440 0.99174 1.21304 0.99401 0.96731 1.01268 0.90861 0.89199 0.89966 0.96013 0.91690 0.88645 0.95266 0.90989 0.90690 0.77321 0.93249 0.92765 0.77325 0.91302 0.89882 0.94490 0.91233 0.89422 0.86541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.58 10.95 55.55 0.61 -19.98 16 2 C 0.08 1.94 5.15 -17.34 -0.09 1.85 16 3 Si 0.91 18.75 29.59 -169.99 -5.03 13.72 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.41 9.05 -37.74 -0.34 -12.75 16 8 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 9 C 0.11 3.02 5.57 -106.83 -0.60 2.42 16 10 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 11 C -0.08 -1.88 7.75 -39.66 -0.31 -2.19 16 12 C -0.21 -4.64 4.15 -104.33 -0.43 -5.07 16 13 C 0.12 2.22 5.42 -4.98 -0.03 2.19 16 14 N -0.53 -9.17 4.80 -236.12 -1.13 -10.31 16 15 C 0.06 1.06 4.43 -3.83 -0.02 1.05 16 16 C -0.13 -2.02 4.90 -26.65 -0.13 -2.15 16 17 C 0.14 1.73 0.80 -90.49 -0.07 1.66 16 18 O -0.56 -7.52 11.84 -44.82 -0.53 -8.05 16 19 C 0.05 0.51 6.17 37.16 0.23 0.74 16 20 O -0.57 -5.68 12.54 -44.82 -0.56 -6.24 16 21 C -0.10 -1.22 5.11 -26.65 -0.14 -1.35 16 22 C 0.06 0.85 5.29 -3.83 -0.02 0.83 16 23 C -0.08 -1.88 9.67 -39.66 -0.38 -2.26 16 24 C -0.17 -4.37 8.70 -38.87 -0.34 -4.71 16 25 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 26 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 27 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.02 0.39 8.02 -51.92 -0.42 -0.03 16 29 H 0.06 1.13 8.08 -51.93 -0.42 0.72 16 30 H 0.10 2.00 5.64 -51.93 -0.29 1.71 16 31 H 0.03 0.53 7.76 -51.93 -0.40 0.13 16 32 H 0.07 1.08 7.77 -51.93 -0.40 0.67 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.38 4.39 8.57 45.56 0.39 4.78 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.38 2.04 9.12 45.56 0.42 2.46 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.57 7.76 -51.93 -0.40 0.17 16 41 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 42 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 43 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -29.00 341.09 -9.76 -38.76 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -5.21 Total: 12.68 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -3.04 Total: -25.73 kcal Atomic # 7 Polarization: -29.76 SS G_CDS: -0.53 Total: -30.28 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -1.09 Total: -14.29 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.00 -9.76 -38.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399008816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.252 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds