Wall clock time and date at job start Tue Mar 31 2020 07:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86796 * 120.00381 * 2 1 4 4 H 1.48497 * 109.47620 * 240.00811 * 3 2 1 5 5 H 1.48504 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46993 * 120.00329 * 3 2 1 7 7 C 1.39944 * 119.99661 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00096 * 162.28774 * 7 2 1 9 9 C 1.41398 * 120.00134 * 342.55151 * 7 2 1 10 10 C 1.40714 * 120.24287 * 155.02246 * 9 7 2 11 11 C 1.37621 * 119.74148 * 179.74373 * 10 9 7 12 12 C 1.38631 * 120.24964 * 0.53822 * 11 10 9 13 13 C 1.50698 * 119.75135 * 179.69027 * 12 11 10 14 14 N 1.46895 * 109.47502 * 270.02892 * 13 12 11 15 15 C 1.46851 * 111.00257 * 45.78725 * 14 13 12 16 16 C 1.53031 * 109.52370 * 185.84271 * 15 14 13 17 17 C 1.53122 * 109.27748 * 300.81899 * 16 15 14 18 18 O 1.42892 * 109.52346 * 297.74828 * 17 16 15 19 19 C 1.53005 * 109.51937 * 177.55897 * 17 16 15 20 20 O 1.42900 * 109.46879 * 60.32235 * 19 17 16 21 21 C 1.53119 * 109.15882 * 57.65828 * 17 16 15 22 22 C 1.46847 * 111.00020 * 169.99810 * 14 13 12 23 23 C 1.38634 * 120.50098 * 359.71965 * 12 11 10 24 24 C 1.37624 * 120.24825 * 0.02562 * 23 12 11 25 25 H 0.97001 * 119.99746 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.13270 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.87054 * 180.27710 * 11 10 9 28 28 H 1.09010 * 109.46496 * 30.02504 * 13 12 11 29 29 H 1.09001 * 109.47113 * 150.02266 * 13 12 11 30 30 H 1.08999 * 109.46006 * 305.86007 * 15 14 13 31 31 H 1.08999 * 109.45832 * 65.82520 * 15 14 13 32 32 H 1.09002 * 109.50145 * 180.87965 * 16 15 14 33 33 H 1.08999 * 109.50562 * 60.76212 * 16 15 14 34 34 H 0.96701 * 114.00146 * 299.68703 * 18 17 16 35 35 H 1.09006 * 109.46714 * 180.31844 * 19 17 16 36 36 H 1.08997 * 109.47273 * 300.31270 * 19 17 16 37 37 H 0.96707 * 113.99595 * 179.97438 * 20 19 17 38 38 H 1.09004 * 109.50207 * 182.40737 * 21 17 16 39 39 H 1.08996 * 109.50969 * 62.28793 * 21 17 16 40 40 H 1.08996 * 109.46159 * 294.17353 * 22 14 13 41 41 H 1.08999 * 109.46355 * 54.14482 * 22 14 13 42 42 H 1.07992 * 119.87753 * 179.97438 * 23 12 11 43 43 H 1.07993 * 120.12560 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2774 2.7465 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0495 -1.2341 -0.2851 9 6 1.3496 -2.4085 0.3661 10 6 1.8187 -3.6486 -0.1053 11 6 1.1734 -4.8072 0.2623 12 6 0.0585 -4.7548 1.0846 13 6 -0.6437 -6.0299 1.4745 14 7 -1.6877 -6.3356 0.4873 15 6 -1.1808 -6.1755 -0.8816 16 6 -2.3287 -6.3589 -1.8768 17 6 -2.9356 -7.7532 -1.6971 18 8 -1.9479 -8.7447 -1.9858 19 6 -4.1229 -7.9204 -2.6475 20 8 -3.6771 -7.7726 -3.9971 21 6 -3.4119 -7.9114 -0.2505 22 6 -2.2325 -7.6829 0.6976 23 6 -0.4156 -3.5382 1.5506 24 6 0.2171 -2.3674 1.2001 25 1 -0.4850 0.8401 0.0004 26 1 2.6841 -3.6913 -0.7501 27 1 1.5343 -5.7604 -0.0947 28 1 0.0774 -6.8468 1.5055 29 1 -1.0978 -5.9085 2.4579 30 1 -0.7557 -5.1785 -0.9971 31 1 -0.4108 -6.9228 -1.0734 32 1 -1.9491 -6.2555 -2.8933 33 1 -3.0927 -5.6032 -1.6944 34 1 -1.6010 -8.7034 -2.8875 35 1 -4.5577 -8.9111 -2.5149 36 1 -4.8739 -7.1616 -2.4276 37 1 -4.3790 -7.8670 -4.6557 38 1 -3.8061 -8.9172 -0.1050 39 1 -4.1930 -7.1802 -0.0425 40 1 -1.4576 -8.4231 0.4984 41 1 -2.5714 -7.7808 1.7290 42 1 -1.2851 -3.5091 2.1904 43 1 -0.1542 -1.4208 1.5639 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399008816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:36 Heat of formation + Delta-G solvation = -107.138379 kcal Electronic energy + Delta-G solvation = -23630.778069 eV Core-core repulsion = 20252.976239 eV Total energy + Delta-G solvation = -3377.801829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92024 -39.54258 -37.83823 -36.53462 -35.52805 -33.53994 -31.91287 -31.68257 -31.04683 -28.98148 -27.09894 -25.01806 -24.13938 -22.87937 -22.65123 -21.43678 -20.69449 -19.21062 -18.36387 -17.42223 -17.21366 -17.02712 -16.33047 -16.00044 -15.73767 -15.67805 -15.58150 -15.19565 -14.87240 -14.46450 -14.21718 -13.82094 -13.72634 -13.49194 -13.46266 -13.01801 -13.00284 -12.75297 -12.54361 -12.41127 -12.33568 -12.13361 -12.08962 -11.98343 -11.38961 -11.32549 -11.21609 -10.99250 -10.93778 -10.62848 -9.36103 -9.28964 -9.01956 -8.62453 -6.32765 0.95463 1.14794 1.37675 1.48759 1.52982 2.21015 2.67826 3.11645 3.21739 3.34841 3.75901 3.80868 3.85448 4.08706 4.23993 4.30199 4.33764 4.43924 4.48968 4.52508 4.57604 4.61858 4.67444 4.71097 4.84253 4.87231 4.99482 5.03504 5.06449 5.13600 5.16500 5.24253 5.32046 5.39701 5.47057 5.71463 5.94595 6.10057 6.16050 6.29946 6.35002 6.39924 6.71409 6.74928 6.88838 6.95064 7.04630 8.34112 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023280 B = 0.003636 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.435704 B = 7698.701370 C = 8213.874304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.505 4.505 8 H 0.073 0.927 9 C 0.082 3.918 10 C -0.243 4.243 11 C -0.081 4.081 12 C -0.199 4.199 13 C 0.124 3.876 14 N -0.539 5.539 15 C 0.068 3.932 16 C -0.129 4.129 17 C 0.135 3.865 18 O -0.567 6.567 19 C 0.057 3.943 20 O -0.589 6.589 21 C -0.098 4.098 22 C 0.058 3.942 23 C -0.084 4.084 24 C -0.190 4.190 25 H 0.288 0.712 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.030 0.970 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.022 0.978 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.385 0.615 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.400 0.600 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.028 0.972 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.677 -13.260 -3.124 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.080 3.920 10 C -0.263 4.263 11 C -0.100 4.100 12 C -0.200 4.200 13 C -0.003 4.003 14 N -0.264 5.264 15 C -0.060 4.060 16 C -0.168 4.168 17 C 0.094 3.906 18 O -0.375 6.375 19 C -0.021 4.021 20 O -0.398 6.398 21 C -0.135 4.135 22 C -0.069 4.069 23 C -0.103 4.103 24 C -0.209 4.209 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.121 0.879 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.234 0.766 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.250 0.750 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.046 0.954 41 H 0.105 0.895 42 H 0.123 0.877 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.835 -12.871 -2.158 16.342 hybrid contribution 0.777 0.557 -1.139 1.487 sum -9.058 -12.314 -3.297 15.638 Atomic orbital electron populations 1.69880 1.08985 1.30552 1.35632 1.26734 0.95472 1.04424 0.91192 0.85270 0.78811 0.75710 0.80011 1.18445 1.19056 1.18521 1.19819 0.98241 0.92656 1.42702 0.90881 1.17929 0.91980 0.92895 0.89227 1.21119 1.04458 0.93282 1.07415 1.20589 0.95600 0.96326 0.97441 1.19247 0.99623 0.94221 1.06903 1.20700 0.91330 0.92984 0.95291 1.62110 1.34455 1.26993 1.02845 1.21882 0.95778 0.99949 0.88432 1.22111 0.98416 0.97788 0.98440 1.21338 0.87474 0.86819 0.94923 1.86431 1.58765 1.55433 1.36854 1.22837 0.95917 1.01174 0.82201 1.86366 1.41189 1.95788 1.16416 1.21561 0.97875 1.03448 0.90631 1.22037 0.96623 0.88084 1.00179 1.20719 0.98037 0.92297 0.99255 1.21262 1.00214 0.97034 1.02402 0.90158 0.88931 0.87947 0.95198 0.90162 0.92606 0.95986 0.91467 0.91358 0.76587 0.91556 0.91801 0.75007 0.89037 0.89020 0.95410 0.89465 0.87722 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.18 10.95 21.83 0.24 -43.94 16 2 C 0.04 1.89 5.15 85.26 0.44 2.33 16 3 Si 0.98 39.02 29.59 68.60 2.03 41.05 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 7 C -0.50 -28.10 9.05 23.46 0.21 -27.89 16 8 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 9 C 0.08 4.57 5.57 -21.29 -0.12 4.46 16 10 C -0.24 -12.41 9.80 22.73 0.22 -12.18 16 11 C -0.08 -3.66 7.75 22.22 0.17 -3.48 16 12 C -0.20 -8.59 4.15 -19.68 -0.08 -8.67 16 13 C 0.12 4.33 5.42 85.56 0.46 4.79 16 14 N -0.54 -17.63 4.80 -900.94 -4.32 -21.95 16 15 C 0.07 2.35 4.43 86.32 0.38 2.74 16 16 C -0.13 -3.76 4.90 30.65 0.15 -3.61 16 17 C 0.14 3.12 0.80 -10.71 -0.01 3.11 16 18 O -0.57 -14.14 11.84 -139.81 -1.66 -15.80 16 19 C 0.06 0.98 6.17 71.98 0.44 1.42 16 20 O -0.59 -10.29 12.54 -139.81 -1.75 -12.05 16 21 C -0.10 -2.08 5.11 30.65 0.16 -1.93 16 22 C 0.06 1.52 5.29 86.33 0.46 1.97 16 23 C -0.08 -4.00 9.67 22.22 0.21 -3.78 16 24 C -0.19 -10.26 8.70 22.73 0.20 -10.06 16 25 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 26 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 27 H 0.10 4.16 8.06 -2.91 -0.02 4.13 16 28 H 0.03 1.01 8.02 -2.38 -0.02 0.99 16 29 H 0.08 2.59 8.08 -2.39 -0.02 2.57 16 30 H 0.06 2.38 5.64 -2.39 -0.01 2.36 16 31 H 0.02 0.79 7.76 -2.39 -0.02 0.77 16 32 H 0.07 1.99 7.77 -2.39 -0.02 1.97 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.39 8.32 8.57 -74.06 -0.63 7.68 16 35 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.40 3.26 9.12 -74.05 -0.68 2.59 16 38 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.03 0.79 7.76 -2.39 -0.02 0.77 16 41 H 0.09 1.97 8.12 -2.39 -0.02 1.95 16 42 H 0.10 4.52 8.06 -2.91 -0.02 4.49 16 43 H 0.10 5.64 6.16 -2.91 -0.02 5.62 16 Total: -1.00 -64.21 341.09 -2.45 -66.66 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: -0.29 Total: 36.80 kcal Atomic # 6 Polarization: -54.09 SS G_CDS: 3.30 Total: -50.78 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -4.09 Total: -65.89 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -3.41 Total: -27.84 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -64.21 -2.45 -66.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399008816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.474 kcal (2) G-P(sol) polarization free energy of solvation -64.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds