Wall clock time and date at job start Tue Mar 31 2020 07:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81403 * 103.00243 * 2 1 4 4 C 1.53114 * 109.52399 * 174.99601 * 3 2 1 5 5 C 1.53036 * 109.27991 * 177.62328 * 4 3 2 6 6 N 1.46849 * 109.52255 * 300.82690 * 5 4 3 7 7 C 1.46898 * 110.99928 * 185.83522 * 6 5 4 8 8 C 1.50700 * 109.47212 * 169.99509 * 7 6 5 9 9 C 1.38629 * 119.75435 * 269.72897 * 8 7 6 10 10 C 1.37618 * 120.25024 * 179.72156 * 9 8 7 11 11 C 1.40712 * 119.74174 * 0.52670 * 10 9 8 12 12 C 1.41396 * 120.24389 * 179.72518 * 11 10 9 13 13 H 1.08004 * 119.99805 * 24.40455 * 12 11 10 14 14 C 1.39949 * 120.00323 * 204.40615 * 12 11 10 15 15 N 1.30818 * 119.99515 * 17.86619 * 14 12 11 16 16 Si 1.86801 * 120.00001 * 197.86719 * 14 12 11 17 17 H 1.48505 * 109.47181 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47099 * 119.99921 * 16 14 12 19 19 H 1.48498 * 109.46908 * 239.99935 * 16 14 12 20 20 C 1.40712 * 119.51395 * 359.75093 * 11 10 9 21 21 C 1.37617 * 119.74750 * 359.97438 * 20 11 10 22 22 C 1.46847 * 111.19794 * 61.74168 * 6 5 4 23 23 C 1.53037 * 109.51853 * 298.25397 * 22 6 5 24 24 H 1.08995 * 109.47295 * 299.99955 * 1 2 3 25 25 H 1.08997 * 109.46905 * 60.00084 * 1 2 3 26 26 H 1.09002 * 109.46922 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.52014 * 54.87394 * 3 2 1 28 28 H 1.09006 * 109.50040 * 57.68544 * 4 3 2 29 29 H 1.09000 * 109.54179 * 297.58973 * 4 3 2 30 30 H 1.08999 * 109.46520 * 180.80600 * 5 4 3 31 31 H 1.09005 * 109.45091 * 60.83621 * 5 4 3 32 32 H 1.08996 * 109.47376 * 290.00060 * 7 6 5 33 33 H 1.09008 * 109.47252 * 50.00013 * 7 6 5 34 34 H 1.08001 * 119.87302 * 359.97438 * 9 8 7 35 35 H 1.08000 * 120.12479 * 180.27612 * 10 9 8 36 36 H 0.97001 * 119.99498 * 180.02562 * 15 14 12 37 37 H 1.08004 * 120.12757 * 179.97438 * 20 11 10 38 38 H 1.07995 * 119.88108 * 180.02562 * 21 20 11 39 39 H 1.08992 * 109.46472 * 58.27643 * 22 6 5 40 40 H 1.09006 * 109.45840 * 178.24572 * 22 6 5 41 41 H 1.08998 * 109.50658 * 299.24023 * 23 22 6 42 42 H 1.09000 * 109.50218 * 179.12491 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7380 1.9427 0.1259 5 6 4.0812 3.4328 0.0657 6 7 3.6095 3.9940 -1.2067 7 6 4.0430 5.3892 -1.3596 8 6 3.7583 5.8526 -2.7651 9 6 4.7204 5.6928 -3.7503 10 6 4.4692 6.1070 -5.0384 11 6 3.2343 6.7048 -5.3510 12 6 2.9671 7.1395 -6.6697 13 1 3.4899 6.6921 -7.5022 14 6 2.0253 8.1496 -6.8962 15 7 1.6517 8.9278 -5.9133 16 14 1.3019 8.3866 -8.6021 17 1 1.8855 7.3855 -9.5308 18 1 -0.1713 8.2089 -8.5440 19 1 1.6168 9.7542 -9.0876 20 6 2.2674 6.8671 -4.3417 21 6 2.5382 6.4403 -3.0617 22 6 2.1506 3.8799 -1.3290 23 6 1.7499 2.4031 -1.3105 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7281 2.2554 0.8403 28 1 4.2338 1.4217 -0.6933 29 1 4.0750 1.5297 1.0767 30 1 5.1611 3.5601 0.1406 31 1 3.5962 3.9507 0.8931 32 1 3.5009 6.0177 -0.6530 33 1 5.1128 5.4610 -1.1631 34 1 5.6692 5.2378 -3.5069 35 1 5.2185 5.9775 -5.8053 36 1 0.9986 9.6277 -6.0702 37 1 1.3164 7.3250 -4.5706 38 1 1.7975 6.5634 -2.2855 39 1 1.6748 4.3959 -0.4951 40 1 1.8283 4.3319 -2.2671 41 1 2.2143 1.8894 -2.1522 42 1 0.6657 2.3192 -1.3856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399013353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:13 Heat of formation + Delta-G solvation = 6.406325 kcal Electronic energy + Delta-G solvation = -20738.976364 eV Core-core repulsion = 17808.851073 eV Total energy + Delta-G solvation = -2930.125291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -39.02279 -37.33980 -34.28503 -33.04995 -31.00525 -29.96145 -29.28528 -28.96730 -26.83653 -24.40025 -23.06132 -22.34939 -20.93623 -19.83166 -19.68832 -17.29081 -16.66812 -15.58327 -15.32484 -14.92502 -14.71743 -14.40157 -14.09972 -13.87384 -13.82980 -13.56417 -13.29508 -13.25521 -12.64979 -12.49471 -12.11974 -11.88883 -11.68981 -11.40290 -11.38074 -11.17060 -11.03505 -10.94194 -10.68669 -10.55075 -10.39807 -10.33011 -9.83556 -9.52775 -9.37370 -9.12363 -7.98906 -7.78744 -7.41925 -7.28286 -6.76599 -4.34236 1.57072 2.45560 2.72615 3.06485 3.09175 3.12351 3.16946 3.92997 4.22947 4.60078 4.67115 4.72727 4.94764 4.97026 5.07215 5.23567 5.39650 5.48281 5.50657 5.60901 5.64078 5.67693 5.75475 5.87737 5.90891 6.02524 6.11274 6.24106 6.33345 6.33829 6.39476 6.43250 6.95273 7.07986 7.26080 7.38375 7.44835 7.45909 7.62892 7.89811 8.06624 8.14859 8.31389 8.64865 8.90596 8.98743 10.17936 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022438 B = 0.003368 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.567391 B = 8310.952266 C = 9011.201248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.273 6.273 3 C -0.047 4.047 4 C -0.094 4.094 5 C 0.059 3.941 6 N -0.530 5.530 7 C 0.121 3.879 8 C -0.208 4.208 9 C -0.068 4.068 10 C -0.228 4.228 11 C 0.112 3.888 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.794 5.794 16 Si 0.906 3.094 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.275 1.275 20 C -0.166 4.166 21 C -0.095 4.095 22 C 0.058 3.942 23 C -0.109 4.109 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.279 0.721 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.023 0.977 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 -10.394 11.034 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.044 6.044 3 C -0.175 4.175 4 C -0.133 4.133 5 C -0.071 4.071 6 N -0.255 5.255 7 C -0.005 4.005 8 C -0.210 4.210 9 C -0.087 4.087 10 C -0.247 4.247 11 C 0.110 3.890 12 C -0.492 4.492 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.419 5.419 16 Si 0.730 3.270 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.200 1.200 20 C -0.185 4.185 21 C -0.114 4.114 22 C -0.071 4.071 23 C -0.149 4.149 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.134 0.866 38 H 0.100 0.900 39 H 0.041 0.959 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.171 -11.386 10.740 15.696 hybrid contribution -1.673 1.738 -0.039 2.413 sum -2.844 -9.648 10.700 14.686 Atomic orbital electron populations 1.23359 0.94420 1.06169 1.04945 1.86776 1.07244 1.12404 1.97950 1.23269 1.00554 0.92439 1.01255 1.21401 0.92176 0.96891 1.02820 1.22057 1.00433 0.93733 0.90834 1.62040 1.11662 1.20022 1.31777 1.20718 0.98902 0.85822 0.95083 1.18821 0.97053 1.11293 0.93787 1.20314 0.96853 0.98363 0.93173 1.20966 0.97548 1.10844 0.95382 1.17617 0.89782 0.88464 0.93143 1.19637 1.19258 1.16788 0.93548 0.90460 1.25905 0.95031 0.94356 0.98838 1.69838 1.25304 1.13330 1.33447 0.86304 0.79348 0.78887 0.82443 1.18373 1.19737 1.20036 1.21270 1.00145 1.04716 0.92409 1.20502 0.95272 0.99477 0.96163 1.22123 0.88005 0.94920 1.02085 1.21917 1.00110 0.96397 0.96472 0.90781 0.90280 0.88364 0.90167 0.90075 0.91087 0.90427 0.95445 0.95874 0.91633 0.89505 0.89140 0.91007 0.86615 0.90025 0.95852 0.88655 0.89701 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.47 101.05 1.06 0.01 16 2 S -0.27 -3.13 21.80 -107.50 -2.34 -5.47 16 3 C -0.05 -0.54 2.72 -26.62 -0.07 -0.61 16 4 C -0.09 -1.09 5.39 -26.65 -0.14 -1.23 16 5 C 0.06 0.75 5.46 -3.83 -0.02 0.72 16 6 N -0.53 -8.28 4.65 -236.11 -1.10 -9.37 16 7 C 0.12 2.08 5.11 -4.98 -0.03 2.06 16 8 C -0.21 -4.39 4.91 -104.33 -0.51 -4.90 16 9 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 10 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 11 C 0.11 2.98 5.58 -106.83 -0.60 2.38 16 12 C -0.46 -12.27 9.05 -37.74 -0.34 -12.61 16 13 H 0.08 1.99 7.91 -52.48 -0.42 1.57 16 14 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 15 N -0.79 -20.40 10.95 55.55 0.61 -19.80 16 16 Si 0.91 18.59 29.60 -169.99 -5.03 13.56 16 17 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 20 C -0.17 -4.24 8.70 -38.87 -0.34 -4.58 16 21 C -0.10 -2.15 7.83 -39.66 -0.31 -2.46 16 22 C 0.06 0.88 5.15 -3.83 -0.02 0.86 16 23 C -0.11 -1.42 5.26 -26.66 -0.14 -1.56 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.68 7.23 -51.93 -0.38 0.30 16 26 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 27 H 0.08 0.90 8.14 -51.92 -0.42 0.47 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.91 8.02 -51.93 -0.42 0.50 16 31 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 33 H 0.07 1.06 7.93 -51.92 -0.41 0.65 16 34 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 37 H 0.12 3.07 6.16 -52.48 -0.32 2.75 16 38 H 0.08 1.68 7.94 -52.49 -0.42 1.27 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.10 1.69 5.74 -51.93 -0.30 1.39 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 0.74 7.06 -51.93 -0.37 0.37 16 LS Contribution 344.13 15.07 5.19 5.19 Total: -1.00 -26.78 344.13 -11.80 -38.58 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.80 Total: 5.29 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -2.32 Total: -27.98 kcal Atomic # 7 Polarization: -28.68 SS G_CDS: -0.49 Total: -29.17 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.34 Total: -5.47 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.78 -11.80 -38.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399013353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.982 kcal (2) G-P(sol) polarization free energy of solvation -26.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds