Wall clock time and date at job start Tue Mar 31 2020 07:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81403 * 103.00243 * 2 1 4 4 C 1.53114 * 109.52399 * 174.99601 * 3 2 1 5 5 C 1.53036 * 109.27991 * 177.62328 * 4 3 2 6 6 N 1.46849 * 109.52255 * 300.82690 * 5 4 3 7 7 C 1.46898 * 110.99928 * 185.83522 * 6 5 4 8 8 C 1.50700 * 109.47212 * 169.99509 * 7 6 5 9 9 C 1.38629 * 119.75435 * 269.72897 * 8 7 6 10 10 C 1.37618 * 120.25024 * 179.72156 * 9 8 7 11 11 C 1.40712 * 119.74174 * 0.52670 * 10 9 8 12 12 C 1.41396 * 120.24389 * 179.72518 * 11 10 9 13 13 H 1.08004 * 119.99805 * 24.40455 * 12 11 10 14 14 C 1.39949 * 120.00323 * 204.40615 * 12 11 10 15 15 N 1.30818 * 119.99515 * 17.86619 * 14 12 11 16 16 Si 1.86801 * 120.00001 * 197.86719 * 14 12 11 17 17 H 1.48505 * 109.47181 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47099 * 119.99921 * 16 14 12 19 19 H 1.48498 * 109.46908 * 239.99935 * 16 14 12 20 20 C 1.40712 * 119.51395 * 359.75093 * 11 10 9 21 21 C 1.37617 * 119.74750 * 359.97438 * 20 11 10 22 22 C 1.46847 * 111.19794 * 61.74168 * 6 5 4 23 23 C 1.53037 * 109.51853 * 298.25397 * 22 6 5 24 24 H 1.08995 * 109.47295 * 299.99955 * 1 2 3 25 25 H 1.08997 * 109.46905 * 60.00084 * 1 2 3 26 26 H 1.09002 * 109.46922 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.52014 * 54.87394 * 3 2 1 28 28 H 1.09006 * 109.50040 * 57.68544 * 4 3 2 29 29 H 1.09000 * 109.54179 * 297.58973 * 4 3 2 30 30 H 1.08999 * 109.46520 * 180.80600 * 5 4 3 31 31 H 1.09005 * 109.45091 * 60.83621 * 5 4 3 32 32 H 1.08996 * 109.47376 * 290.00060 * 7 6 5 33 33 H 1.09008 * 109.47252 * 50.00013 * 7 6 5 34 34 H 1.08001 * 119.87302 * 359.97438 * 9 8 7 35 35 H 1.08000 * 120.12479 * 180.27612 * 10 9 8 36 36 H 0.97001 * 119.99498 * 180.02562 * 15 14 12 37 37 H 1.08004 * 120.12757 * 179.97438 * 20 11 10 38 38 H 1.07995 * 119.88108 * 180.02562 * 21 20 11 39 39 H 1.08992 * 109.46472 * 58.27643 * 22 6 5 40 40 H 1.09006 * 109.45840 * 178.24572 * 22 6 5 41 41 H 1.08998 * 109.50658 * 299.24023 * 23 22 6 42 42 H 1.09000 * 109.50218 * 179.12491 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7380 1.9427 0.1259 5 6 4.0812 3.4328 0.0657 6 7 3.6095 3.9940 -1.2067 7 6 4.0430 5.3892 -1.3596 8 6 3.7583 5.8526 -2.7651 9 6 4.7204 5.6928 -3.7503 10 6 4.4692 6.1070 -5.0384 11 6 3.2343 6.7048 -5.3510 12 6 2.9671 7.1395 -6.6697 13 1 3.4899 6.6921 -7.5022 14 6 2.0253 8.1496 -6.8962 15 7 1.6517 8.9278 -5.9133 16 14 1.3019 8.3866 -8.6021 17 1 1.8855 7.3855 -9.5308 18 1 -0.1713 8.2089 -8.5440 19 1 1.6168 9.7542 -9.0876 20 6 2.2674 6.8671 -4.3417 21 6 2.5382 6.4403 -3.0617 22 6 2.1506 3.8799 -1.3290 23 6 1.7499 2.4031 -1.3105 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7281 2.2554 0.8403 28 1 4.2338 1.4217 -0.6933 29 1 4.0750 1.5297 1.0767 30 1 5.1611 3.5601 0.1406 31 1 3.5962 3.9507 0.8931 32 1 3.5009 6.0177 -0.6530 33 1 5.1128 5.4610 -1.1631 34 1 5.6692 5.2378 -3.5069 35 1 5.2185 5.9775 -5.8053 36 1 0.9986 9.6277 -6.0702 37 1 1.3164 7.3250 -4.5706 38 1 1.7975 6.5634 -2.2855 39 1 1.6748 4.3959 -0.4951 40 1 1.8283 4.3319 -2.2671 41 1 2.2143 1.8894 -2.1522 42 1 0.6657 2.3192 -1.3856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399013353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:12 Heat of formation + Delta-G solvation = -6.068505 kcal Electronic energy + Delta-G solvation = -20739.517313 eV Core-core repulsion = 17808.851073 eV Total energy + Delta-G solvation = -2930.666240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.31047 -38.99856 -35.91771 -34.51452 -32.15750 -31.55709 -31.11187 -29.70802 -28.43461 -25.91871 -24.14122 -23.73808 -22.73899 -21.51278 -20.80499 -19.20204 -17.64302 -17.18547 -16.61346 -16.31982 -16.04983 -15.68497 -15.29839 -15.24361 -14.98764 -14.72420 -14.63775 -14.20650 -14.13862 -13.80244 -13.58037 -13.40181 -13.20751 -12.85838 -12.75945 -12.54596 -12.44728 -12.29579 -12.13789 -12.02347 -11.71240 -11.44129 -11.31867 -11.23530 -10.97778 -10.70538 -9.35759 -9.21870 -9.06719 -8.68122 -8.62752 -6.31153 0.73719 0.95945 1.18885 1.37707 1.49513 1.52959 1.64500 2.21210 2.67896 3.15027 3.66948 3.70002 3.83030 4.07292 4.13578 4.29715 4.31432 4.33896 4.34492 4.44190 4.51142 4.54130 4.62948 4.68300 4.73355 4.79701 4.84456 4.91657 4.97686 5.07068 5.08681 5.12842 5.18123 5.31013 5.40530 5.50755 5.73813 5.99116 6.12936 6.14859 6.29072 6.36886 6.42968 6.73288 6.97016 7.07131 8.34320 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022438 B = 0.003368 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.567391 B = 8310.952266 C = 9011.201248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.304 6.304 3 C -0.038 4.038 4 C -0.089 4.089 5 C 0.061 3.939 6 N -0.543 5.543 7 C 0.126 3.874 8 C -0.193 4.193 9 C -0.072 4.072 10 C -0.245 4.245 11 C 0.080 3.920 12 C -0.504 4.504 13 H 0.071 0.929 14 C 0.036 3.964 15 N -0.826 5.826 16 Si 0.980 3.020 17 H -0.260 1.260 18 H -0.264 1.264 19 H -0.265 1.265 20 C -0.190 4.190 21 C -0.094 4.094 22 C 0.061 3.939 23 C -0.102 4.102 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.031 0.969 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.287 0.713 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.033 0.967 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.112 -11.294 12.697 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.076 6.076 3 C -0.167 4.167 4 C -0.128 4.128 5 C -0.068 4.068 6 N -0.268 5.268 7 C -0.001 4.001 8 C -0.194 4.194 9 C -0.091 4.091 10 C -0.265 4.265 11 C 0.078 3.922 12 C -0.533 4.533 13 H 0.089 0.911 14 C -0.178 4.178 15 N -0.452 5.452 16 Si 0.801 3.199 17 H -0.183 1.183 18 H -0.188 1.188 19 H -0.190 1.190 20 C -0.209 4.209 21 C -0.112 4.112 22 C -0.069 4.069 23 C -0.142 4.142 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.130 0.870 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.381 -12.299 12.422 17.535 hybrid contribution -1.573 1.920 -0.402 2.514 sum -2.954 -10.379 12.019 16.153 Atomic orbital electron populations 1.23427 0.91776 1.07326 1.05575 1.86908 1.10256 1.12418 1.97983 1.23166 1.00668 0.92374 1.00442 1.21367 0.92036 0.96122 1.03244 1.22129 1.01192 0.94062 0.89428 1.61933 1.11933 1.18781 1.34173 1.20643 1.00150 0.87008 0.92259 1.19272 0.95664 1.08707 0.95797 1.20628 0.98202 0.97842 0.92427 1.21161 0.97190 1.11397 0.96740 1.17942 0.90852 0.89689 0.93761 1.19848 1.21397 1.18430 0.93660 0.91067 1.26717 0.94737 0.93411 1.02972 1.69884 1.25926 1.13890 1.35544 0.85200 0.78591 0.78978 0.77175 1.18348 1.18829 1.19010 1.21228 0.99612 1.06302 0.93771 1.20707 0.96372 0.98712 0.95441 1.22043 0.87972 0.96126 1.00778 1.21819 1.00657 0.94893 0.96789 0.89531 0.90231 0.87005 0.89099 0.91505 0.89217 0.89251 0.94225 0.95055 0.89980 0.86911 0.88980 0.90250 0.88450 0.88221 0.94858 0.91794 0.91671 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 10.47 113.37 1.19 -0.50 16 2 S -0.30 -6.40 21.80 -56.49 -1.23 -7.63 16 3 C -0.04 -0.79 2.72 30.67 0.08 -0.71 16 4 C -0.09 -1.82 5.39 30.64 0.17 -1.66 16 5 C 0.06 1.34 5.46 86.32 0.47 1.81 16 6 N -0.54 -15.73 4.65 -900.92 -4.19 -19.92 16 7 C 0.13 4.03 5.11 85.56 0.44 4.46 16 8 C -0.19 -7.97 4.91 -19.67 -0.10 -8.07 16 9 C -0.07 -3.18 9.67 22.22 0.21 -2.97 16 10 C -0.25 -12.34 9.80 22.73 0.22 -12.12 16 11 C 0.08 4.40 5.58 -21.29 -0.12 4.28 16 12 C -0.50 -27.92 9.05 23.46 0.21 -27.70 16 13 H 0.07 3.85 7.91 -2.91 -0.02 3.83 16 14 C 0.04 1.86 5.14 85.26 0.44 2.29 16 15 N -0.83 -43.81 10.95 21.83 0.24 -43.57 16 16 Si 0.98 38.91 29.60 68.60 2.03 40.94 16 17 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 18 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 19 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 20 C -0.19 -10.05 8.70 22.73 0.20 -9.85 16 21 C -0.09 -4.25 7.83 22.22 0.17 -4.07 16 22 C 0.06 1.74 5.15 86.33 0.44 2.18 16 23 C -0.10 -2.51 5.26 30.64 0.16 -2.35 16 24 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.08 1.20 7.23 -2.39 -0.02 1.18 16 26 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.78 8.02 -2.39 -0.02 1.76 16 31 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.03 0.96 8.06 -2.39 -0.02 0.94 16 33 H 0.08 2.38 7.93 -2.38 -0.02 2.36 16 34 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.09 4.45 8.06 -2.91 -0.02 4.42 16 36 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 37 H 0.10 5.43 6.16 -2.91 -0.02 5.41 16 38 H 0.10 4.08 7.94 -2.91 -0.02 4.05 16 39 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 2.24 5.74 -2.38 -0.01 2.23 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.07 1.61 7.06 -2.39 -0.02 1.60 16 Total: -1.00 -59.55 344.13 2.02 -57.53 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.98 Total: 27.61 kcal Atomic # 6 Polarization: -59.15 SS G_CDS: 4.19 Total: -54.96 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -3.95 Total: -63.49 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Atomic # 16 Polarization: -6.40 SS G_CDS: -1.23 Total: -7.63 kcal Total: -59.55 2.02 -57.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399013353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.461 kcal (2) G-P(sol) polarization free energy of solvation -59.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds