Wall clock time and date at job start Tue Mar 31 2020 08:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99690 * 2 1 4 4 H 1.48500 * 109.46635 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47218 * 299.99835 * 3 2 1 6 6 H 1.48500 * 109.47257 * 60.00259 * 3 2 1 7 7 C 1.37874 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99533 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47142 * 179.97438 * 9 7 2 11 11 C 1.53045 * 109.46010 * 174.99633 * 10 9 7 12 12 C 1.53189 * 109.31245 * 181.38573 * 11 10 9 13 13 N 1.46927 * 108.77631 * 305.36730 * 12 11 10 14 14 C 1.34776 * 120.62597 * 233.58422 * 13 12 11 15 15 O 1.21277 * 120.00298 * 0.02562 * 14 13 12 16 16 C 1.50708 * 119.99417 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46919 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47301 * 180.02562 * 17 16 14 19 19 C 1.34512 * 125.79090 * 90.02258 * 18 17 16 20 20 C 1.41379 * 106.84332 * 180.02562 * 19 18 17 21 21 C 1.34512 * 106.84086 * 0.02562 * 20 19 18 22 22 O 1.34301 * 125.79037 * 270.02854 * 18 17 16 23 23 C 1.46924 * 118.73666 * 53.85837 * 13 12 11 24 24 C 1.53041 * 109.46029 * 295.06488 * 10 9 7 25 25 H 0.97000 * 120.00032 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47233 * 59.99484 * 9 7 2 27 27 H 1.09001 * 109.46889 * 299.99481 * 9 7 2 28 28 H 1.09001 * 109.46159 * 55.02825 * 10 9 7 29 29 H 1.09004 * 109.49761 * 61.43413 * 11 10 9 30 30 H 1.09001 * 109.52275 * 301.35643 * 11 10 9 31 31 H 1.08998 * 109.58604 * 185.57902 * 12 11 10 32 32 H 1.09008 * 109.70310 * 65.22531 * 12 11 10 33 33 H 1.08997 * 109.46722 * 60.00395 * 16 14 13 34 34 H 1.08995 * 109.47359 * 300.00427 * 16 14 13 35 35 H 1.09003 * 109.46927 * 60.00198 * 17 16 14 36 36 H 1.09005 * 109.46937 * 300.00670 * 17 16 14 37 37 H 1.08007 * 126.58064 * 359.97438 * 19 18 17 38 38 H 1.07996 * 126.58354 * 180.02562 * 20 19 18 39 39 H 1.07998 * 125.79383 * 179.97438 * 21 20 19 40 40 H 1.08995 * 109.58519 * 65.93128 * 23 13 12 41 41 H 1.09002 * 109.58000 * 186.34975 * 23 13 12 42 42 H 1.08991 * 109.49616 * 298.56391 * 24 10 9 43 43 H 1.08996 * 109.49266 * 58.63366 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4840 -4.9837 0.1264 12 6 2.4844 -6.1433 0.1609 13 7 3.3505 -6.0561 -1.0228 14 6 3.4923 -7.1114 -1.8490 15 8 2.9018 -8.1454 -1.6190 16 6 4.3839 -7.0060 -3.0595 17 6 4.3678 -8.3326 -3.8218 18 6 5.2598 -8.2275 -5.0318 19 6 6.5712 -8.5242 -5.0705 20 6 7.0070 -8.2825 -6.3936 21 6 5.9360 -7.8521 -7.0842 22 8 4.8803 -7.8217 -6.2545 23 6 4.0637 -4.7986 -1.2851 24 6 3.0413 -3.6523 -1.3066 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.9290 -3.5552 0.8427 29 1 0.8182 -5.1029 -0.7284 30 1 0.8986 -4.9807 1.0458 31 1 1.9459 -7.0909 0.1506 32 1 3.0918 -6.0779 1.0637 33 1 5.4022 -6.7813 -2.7422 34 1 4.0217 -6.2095 -3.7094 35 1 3.3494 -8.5569 -4.1391 36 1 4.7297 -9.1294 -3.1720 37 1 7.1756 -8.8782 -4.2484 38 1 8.0078 -8.4176 -6.7764 39 1 5.9264 -7.5780 -8.1287 40 1 4.7969 -4.6234 -0.4979 41 1 4.5676 -4.8588 -2.2498 42 1 2.3609 -3.7840 -2.1478 43 1 3.5642 -2.7012 -1.4069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399356534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:11 Heat of formation + Delta-G solvation = -63.604063 kcal Electronic energy + Delta-G solvation = -22815.520979 eV Core-core repulsion = 19439.606940 eV Total energy + Delta-G solvation = -3375.914040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.44993 -41.22244 -38.77819 -35.68838 -35.13204 -33.99725 -33.65696 -32.09242 -30.14119 -29.42738 -26.63051 -25.31607 -24.10583 -23.19893 -22.62387 -21.40643 -21.03656 -19.81543 -18.58460 -18.39396 -17.69162 -17.12030 -16.78986 -16.56655 -16.51748 -15.48998 -15.27719 -15.09724 -14.85543 -14.55001 -14.35872 -14.05368 -13.86969 -13.68522 -13.55492 -13.42298 -13.11062 -12.98170 -12.94440 -12.69306 -12.51832 -12.29936 -12.14137 -12.03667 -11.72808 -11.35948 -11.13409 -10.83722 -10.82297 -10.75188 -10.52215 -9.59512 -9.34593 -8.15880 -6.25506 0.82021 1.41819 1.42767 1.54982 1.60487 1.73554 1.99471 2.23674 2.43446 3.18150 3.46296 3.88016 3.90117 4.03478 4.04220 4.07353 4.17383 4.20109 4.23678 4.35097 4.42291 4.49653 4.63583 4.69497 4.76154 4.84185 4.90472 4.95232 4.98622 5.01172 5.10609 5.12110 5.28386 5.32339 5.34280 5.41528 5.55399 5.61170 5.66768 5.82848 5.90471 6.26469 6.29366 6.44922 6.92024 7.14524 7.43577 8.96414 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.003092 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.566573 B = 9054.529451 C =10085.080019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.005 4.005 3 Si 0.961 3.039 4 H -0.255 1.255 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.524 4.524 8 H 0.069 0.931 9 C 0.031 3.969 10 C -0.073 4.073 11 C -0.122 4.122 12 C 0.118 3.882 13 N -0.608 5.608 14 C 0.513 3.487 15 O -0.586 6.586 16 C -0.128 4.128 17 C -0.018 4.018 18 C -0.027 4.027 19 C -0.214 4.214 20 C -0.226 4.226 21 C -0.048 4.048 22 O -0.197 6.197 23 C 0.111 3.889 24 C -0.116 4.116 25 H 0.260 0.740 26 H -0.017 1.017 27 H -0.015 1.015 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.162 0.838 38 H 0.168 0.832 39 H 0.232 0.768 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.044 0.956 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.806 -15.500 -9.939 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.202 4.202 3 Si 0.786 3.214 4 H -0.179 1.179 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.087 0.913 9 C -0.006 4.006 10 C -0.092 4.092 11 C -0.160 4.160 12 C -0.004 4.004 13 N -0.340 5.340 14 C 0.303 3.697 15 O -0.467 6.467 16 C -0.168 4.168 17 C -0.056 4.056 18 C -0.077 4.077 19 C -0.233 4.233 20 C -0.245 4.245 21 C -0.114 4.114 22 O -0.094 6.094 23 C -0.011 4.011 24 C -0.154 4.154 25 H 0.069 0.931 26 H 0.001 0.999 27 H 0.003 0.997 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.180 0.820 38 H 0.185 0.815 39 H 0.249 0.751 40 H 0.106 0.894 41 H 0.127 0.873 42 H 0.063 0.937 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.077 -15.836 -9.879 23.993 hybrid contribution -0.288 1.171 0.103 1.211 sum 14.789 -14.665 -9.776 23.007 Atomic orbital electron populations 1.70125 1.07977 1.27428 1.52482 1.25991 0.95630 1.03383 0.95226 0.85457 0.79490 0.79098 0.77365 1.17883 1.20889 1.20995 1.21707 0.93691 0.91725 1.49096 0.91284 1.19032 0.94096 0.93322 0.94122 1.21038 0.97019 0.93308 0.97801 1.21909 0.97835 0.94733 1.01561 1.21547 0.92458 0.98687 0.87736 1.48279 1.46269 1.13500 1.25975 1.21057 0.81865 0.82435 0.84343 1.90658 1.50117 1.30602 1.75314 1.21689 1.01488 0.99594 0.93986 1.19747 0.98481 0.97825 0.89508 1.22525 0.95430 1.04266 0.85474 1.21929 0.94448 1.07564 0.99383 1.22190 1.01395 1.06808 0.94121 1.24769 0.84301 1.04823 0.97552 1.84030 1.38548 1.67300 1.19522 1.22080 0.93936 0.81337 1.03750 1.21876 0.97874 0.98655 0.96973 0.93093 0.99867 0.99705 0.91758 0.93754 0.91184 0.90160 0.89978 0.85877 0.87762 0.90817 0.87774 0.82044 0.81453 0.75147 0.89430 0.87272 0.93670 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.00 13.29 21.45 0.28 -56.71 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 3 Si 0.96 43.15 29.54 68.60 2.03 45.17 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.52 -28.28 8.39 25.60 0.21 -28.06 16 8 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 9 C 0.03 1.60 4.45 29.85 0.13 1.73 16 10 C -0.07 -2.76 2.10 -10.77 -0.02 -2.78 16 11 C -0.12 -4.09 5.36 30.67 0.16 -3.93 16 12 C 0.12 3.32 6.43 86.36 0.56 3.87 16 13 N -0.61 -15.86 2.97 -818.07 -2.43 -18.28 16 14 C 0.51 13.41 7.70 87.66 0.67 14.09 16 15 O -0.59 -19.33 15.39 -3.02 -0.05 -19.37 16 16 C -0.13 -2.39 4.03 29.85 0.12 -2.27 16 17 C -0.02 -0.35 5.04 29.85 0.15 -0.20 16 18 C -0.03 -0.54 6.57 24.83 0.16 -0.37 16 19 C -0.21 -3.66 10.81 22.19 0.24 -3.42 16 20 C -0.23 -3.41 10.91 22.19 0.24 -3.17 16 21 C -0.05 -0.72 12.09 66.97 0.81 0.08 16 22 O -0.20 -4.16 10.65 -2.47 -0.03 -4.19 16 23 C 0.11 2.54 6.37 86.51 0.55 3.09 16 24 C -0.12 -3.73 5.21 30.82 0.16 -3.57 16 25 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 26 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 27 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 28 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.08 2.37 7.00 -2.39 -0.02 2.36 16 32 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.12 1.68 7.93 -2.39 -0.02 1.66 16 34 H 0.10 1.87 7.70 -2.39 -0.02 1.86 16 35 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 36 H 0.10 1.93 8.10 -2.38 -0.02 1.91 16 37 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 38 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.23 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.11 1.87 5.93 -2.39 -0.01 1.86 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.08 2.61 6.91 -2.39 -0.02 2.59 16 Total: -1.00 -70.73 350.41 5.41 -65.32 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.98 Total: 12.82 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 4.62 Total: -24.76 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -2.14 Total: -74.99 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.07 Total: -23.56 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -70.73 5.41 -65.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399356534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.715 kcal (2) G-P(sol) polarization free energy of solvation -70.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds