Wall clock time and date at job start Tue Mar 31 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47581 * 2 1 4 4 C 1.53010 * 109.46723 * 119.99791 * 2 1 3 5 5 C 1.52989 * 109.47340 * 64.99926 * 4 2 1 6 6 N 1.46901 * 109.47338 * 179.97438 * 5 4 2 7 7 C 1.46898 * 110.99602 * 66.04406 * 6 5 4 8 8 C 1.50703 * 109.46719 * 199.18324 * 7 6 5 9 9 H 1.07999 * 119.99879 * 239.99669 * 8 7 6 10 10 C 1.37875 * 120.00006 * 60.00917 * 8 7 6 11 11 N 1.31508 * 119.99835 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00084 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47181 * 59.99241 * 12 10 8 14 14 H 1.48501 * 109.47098 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47063 * 299.99801 * 12 10 8 16 16 C 1.38724 * 110.99957 * 189.99731 * 6 5 4 17 17 N 1.32513 * 119.55215 * 295.24684 * 16 6 5 18 18 C 1.31680 * 121.80455 * 179.70885 * 17 16 6 19 19 C 1.39567 * 120.67702 * 0.56927 * 18 17 16 20 20 C 1.43202 * 120.47100 * 179.74605 * 19 18 17 21 21 N 9.65878 * 88.38625 * 169.30028 * 2 1 3 22 22 C 1.40362 * 119.04903 * 359.71971 * 19 18 17 23 23 C 1.38061 * 118.35046 * 0.02562 * 22 19 18 24 24 F 1.35097 * 120.38893 * 179.97438 * 23 22 19 25 25 H 1.09002 * 109.46874 * 300.00784 * 1 2 3 26 26 H 1.09000 * 109.46854 * 60.00278 * 1 2 3 27 27 H 1.08994 * 109.47447 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47550 * 239.99092 * 2 1 3 29 29 H 1.09001 * 109.47275 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.46639 * 299.99519 * 3 2 1 31 31 H 1.08991 * 109.47085 * 59.99289 * 3 2 1 32 32 H 1.08998 * 109.46637 * 304.99299 * 4 2 1 33 33 H 1.08997 * 109.46803 * 185.00191 * 4 2 1 34 34 H 1.09006 * 109.47645 * 59.99733 * 5 4 2 35 35 H 1.09007 * 109.47509 * 300.00394 * 5 4 2 36 36 H 1.09008 * 109.47116 * 79.18676 * 7 6 5 37 37 H 1.08993 * 109.47658 * 319.18458 * 7 6 5 38 38 H 0.97000 * 119.99970 * 180.02562 * 11 10 8 39 39 H 1.07995 * 119.65650 * 180.26519 * 18 17 16 40 40 H 1.08004 * 120.82276 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 1.6352 -2.1954 1.1882 6 7 2.1253 -2.8880 2.3874 7 6 1.4521 -2.3905 3.5946 8 6 2.2696 -2.7483 4.8090 9 1 1.8434 -3.3695 5.5829 10 6 3.5614 -2.2826 4.9322 11 7 4.0804 -1.5264 3.9897 12 14 4.5744 -2.7255 6.4378 13 1 4.7154 -4.2014 6.5229 14 1 5.9194 -2.1056 6.3294 15 1 3.8938 -2.2223 7.6579 16 6 1.9748 -4.2615 2.2646 17 7 0.7584 -4.7814 2.1861 18 6 0.5644 -6.0780 2.0630 19 6 1.6460 -6.9591 2.0224 20 6 1.4298 -8.3688 1.8938 21 7 1.2580 -9.4871 1.7926 22 6 2.9487 -6.4435 2.1087 23 6 3.1063 -5.0775 2.2316 24 9 4.3415 -4.5371 2.3184 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6767 1.9563 0.8898 32 1 1.6053 -0.2616 2.1370 33 1 3.1262 -0.6443 1.2953 34 1 2.0697 -2.6551 0.3005 35 1 0.5488 -2.2723 1.1422 36 1 0.4649 -2.8459 3.6740 37 1 1.3486 -1.3073 3.5327 38 1 4.9894 -1.1991 4.0762 39 1 -0.4421 -6.4639 1.9977 40 1 3.8064 -7.0993 2.0797 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413196620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:28 Heat of formation + Delta-G solvation = 23.648137 kcal Electronic energy + Delta-G solvation = -23522.324555 eV Core-core repulsion = 20059.026500 eV Total energy + Delta-G solvation = -3463.298054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -48.16530 -40.08751 -37.48357 -36.43252 -35.15680 -32.55199 -31.99007 -30.33118 -28.50413 -26.87893 -26.71688 -23.81911 -23.42346 -22.74303 -20.78234 -19.30752 -19.03953 -17.21574 -16.90309 -15.79652 -15.72700 -15.36423 -14.82142 -14.57745 -14.40003 -13.93816 -13.86423 -13.44333 -13.34705 -13.15117 -12.99515 -12.91471 -12.60553 -12.31638 -12.16251 -11.96413 -11.92435 -11.44781 -11.22492 -10.93528 -10.81327 -10.64352 -10.34055 -10.19536 -9.99990 -9.65855 -9.50984 -9.44973 -9.20813 -8.45967 -8.29102 -7.36305 -5.95498 -4.07926 0.70819 1.32717 2.61253 3.01558 3.31809 3.37406 3.40606 3.77251 3.96016 4.24320 4.45315 4.70585 4.76705 4.82639 5.20318 5.25596 5.35160 5.35825 5.55396 5.73995 5.82167 5.87009 5.88298 5.97142 6.05016 6.09289 6.14431 6.23301 6.32885 6.42653 6.48381 6.59880 6.71620 6.91649 7.02158 7.20542 7.22351 7.43042 7.83648 8.00087 8.12021 8.23954 8.45113 8.97590 9.62546 11.08985 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.006913 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.037208 B = 4049.217372 C = 5920.300513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.142 4.142 4 C -0.098 4.098 5 C 0.069 3.931 6 N -0.460 5.460 7 C 0.193 3.807 8 C -0.547 4.547 9 H 0.050 0.950 10 C 0.094 3.906 11 N -0.837 5.837 12 Si 0.876 3.124 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.278 1.278 16 C 0.353 3.647 17 N -0.493 5.493 18 C 0.150 3.850 19 C -0.090 4.090 20 C 0.272 3.728 21 N -0.427 5.427 22 C -0.075 4.075 23 C 0.088 3.912 24 F -0.103 7.103 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.033 0.967 36 H 0.003 0.997 37 H 0.047 0.953 38 H 0.258 0.742 39 H 0.162 0.838 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.641 -0.809 -8.027 8.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.200 4.200 4 C -0.136 4.136 5 C -0.058 4.058 6 N -0.185 5.185 7 C 0.072 3.928 8 C -0.586 4.586 9 H 0.068 0.932 10 C -0.114 4.114 11 N -0.471 5.471 12 Si 0.704 3.296 13 H -0.204 1.204 14 H -0.212 1.212 15 H -0.204 1.204 16 C 0.123 3.877 17 N -0.205 5.205 18 C -0.013 4.013 19 C -0.096 4.096 20 C -0.043 4.043 21 N -0.103 5.103 22 C -0.103 4.103 23 C 0.064 3.936 24 F -0.081 7.081 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.021 0.979 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.179 0.821 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.907 -1.676 -8.157 9.198 hybrid contribution 0.973 -0.548 0.927 1.451 sum -2.934 -2.224 -7.230 8.114 Atomic orbital electron populations 1.21888 0.95956 1.01619 1.00952 1.21143 0.95326 0.96095 0.99095 1.21786 1.01045 0.96204 1.00936 1.21530 1.02762 0.93150 0.96176 1.22021 0.96917 0.95076 0.91759 1.60915 1.58004 0.95484 1.04081 1.19913 0.90983 0.96293 0.85607 1.20927 0.99249 1.34451 1.03966 0.93150 1.24845 0.97388 0.94094 0.95103 1.69987 1.14442 1.31325 1.31304 0.86944 0.79724 0.78850 0.84106 1.20423 1.21176 1.20386 1.20627 0.85999 0.93716 0.87374 1.68173 1.25335 1.13511 1.13465 1.22685 0.97935 0.87873 0.92775 1.16688 0.94639 0.85965 1.12314 1.25345 0.93632 0.92191 0.93155 1.81226 1.07537 1.11665 1.09849 1.21488 0.97027 0.93998 0.97811 1.18195 0.82076 0.90244 1.03116 1.91591 1.37647 1.86047 1.92807 0.92786 0.93679 0.92590 0.92032 0.92710 0.93616 0.92766 0.91248 0.90171 0.93249 0.94904 0.97883 0.93485 0.93192 0.82119 0.83293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.95 37.16 0.33 -1.54 16 2 C -0.10 -1.36 2.92 -90.61 -0.26 -1.62 16 3 C -0.14 -1.83 9.19 37.16 0.34 -1.48 16 4 C -0.10 -1.73 4.65 -26.73 -0.12 -1.85 16 5 C 0.07 1.26 4.51 -3.83 -0.02 1.24 16 6 N -0.46 -9.86 3.55 -174.49 -0.62 -10.48 16 7 C 0.19 4.57 4.76 -4.98 -0.02 4.54 16 8 C -0.55 -14.34 9.01 -34.44 -0.31 -14.65 16 9 H 0.05 1.35 7.81 -52.49 -0.41 0.94 16 10 C 0.09 2.46 5.39 -17.82 -0.10 2.36 16 11 N -0.84 -21.98 12.77 55.43 0.71 -21.28 16 12 Si 0.88 20.59 29.54 -169.99 -5.02 15.57 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 C 0.35 6.97 4.88 -155.04 -0.76 6.21 16 17 N -0.49 -8.69 9.40 -12.06 -0.11 -8.80 16 18 C 0.15 2.10 10.91 -17.12 -0.19 1.92 16 19 C -0.09 -1.23 5.75 -106.68 -0.61 -1.84 16 20 C 0.27 3.68 15.37 -22.48 -0.35 3.33 16 21 N -0.43 -6.42 18.54 41.83 0.78 -5.64 16 22 C -0.07 -1.09 9.88 -38.85 -0.38 -1.48 16 23 C 0.09 1.63 7.34 -39.16 -0.29 1.34 16 24 F -0.10 -2.15 17.08 2.25 0.04 -2.11 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.51 8.14 -51.92 -0.42 0.08 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.34 6.25 -51.93 -0.32 1.02 16 33 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 34 H 0.05 0.86 8.05 -51.93 -0.42 0.44 16 35 H 0.03 0.59 6.54 -51.92 -0.34 0.25 16 36 H 0.00 0.07 7.41 -51.92 -0.38 -0.32 16 37 H 0.05 1.15 5.89 -51.93 -0.31 0.85 16 38 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 39 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.15 1.79 8.06 -52.48 -0.42 1.36 16 LS Contribution 345.64 15.07 5.21 5.21 Total: -1.00 -27.32 345.64 -7.22 -34.54 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.46 Total: -3.48 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.74 Total: -3.51 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.75 Total: -46.21 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.32 -7.22 -34.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413196620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.189 kcal (2) G-P(sol) polarization free energy of solvation -27.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds