Wall clock time and date at job start Tue Mar 31 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47581 * 2 1 4 4 C 1.53010 * 109.46723 * 119.99791 * 2 1 3 5 5 C 1.52989 * 109.47340 * 64.99926 * 4 2 1 6 6 N 1.46901 * 109.47338 * 179.97438 * 5 4 2 7 7 C 1.46898 * 110.99602 * 66.04406 * 6 5 4 8 8 C 1.50703 * 109.46719 * 199.18324 * 7 6 5 9 9 H 1.07999 * 119.99879 * 239.99669 * 8 7 6 10 10 C 1.37875 * 120.00006 * 60.00917 * 8 7 6 11 11 N 1.31508 * 119.99835 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00084 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47181 * 59.99241 * 12 10 8 14 14 H 1.48501 * 109.47098 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47063 * 299.99801 * 12 10 8 16 16 C 1.38724 * 110.99957 * 189.99731 * 6 5 4 17 17 N 1.32513 * 119.55215 * 295.24684 * 16 6 5 18 18 C 1.31680 * 121.80455 * 179.70885 * 17 16 6 19 19 C 1.39567 * 120.67702 * 0.56927 * 18 17 16 20 20 C 1.43202 * 120.47100 * 179.74605 * 19 18 17 21 21 N 9.65878 * 88.38625 * 169.30028 * 2 1 3 22 22 C 1.40362 * 119.04903 * 359.71971 * 19 18 17 23 23 C 1.38061 * 118.35046 * 0.02562 * 22 19 18 24 24 F 1.35097 * 120.38893 * 179.97438 * 23 22 19 25 25 H 1.09002 * 109.46874 * 300.00784 * 1 2 3 26 26 H 1.09000 * 109.46854 * 60.00278 * 1 2 3 27 27 H 1.08994 * 109.47447 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47550 * 239.99092 * 2 1 3 29 29 H 1.09001 * 109.47275 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.46639 * 299.99519 * 3 2 1 31 31 H 1.08991 * 109.47085 * 59.99289 * 3 2 1 32 32 H 1.08998 * 109.46637 * 304.99299 * 4 2 1 33 33 H 1.08997 * 109.46803 * 185.00191 * 4 2 1 34 34 H 1.09006 * 109.47645 * 59.99733 * 5 4 2 35 35 H 1.09007 * 109.47509 * 300.00394 * 5 4 2 36 36 H 1.09008 * 109.47116 * 79.18676 * 7 6 5 37 37 H 1.08993 * 109.47658 * 319.18458 * 7 6 5 38 38 H 0.97000 * 119.99970 * 180.02562 * 11 10 8 39 39 H 1.07995 * 119.65650 * 180.26519 * 18 17 16 40 40 H 1.08004 * 120.82276 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 1.6352 -2.1954 1.1882 6 7 2.1253 -2.8880 2.3874 7 6 1.4521 -2.3905 3.5946 8 6 2.2696 -2.7483 4.8090 9 1 1.8434 -3.3695 5.5829 10 6 3.5614 -2.2826 4.9322 11 7 4.0804 -1.5264 3.9897 12 14 4.5744 -2.7255 6.4378 13 1 4.7154 -4.2014 6.5229 14 1 5.9194 -2.1056 6.3294 15 1 3.8938 -2.2223 7.6579 16 6 1.9748 -4.2615 2.2646 17 7 0.7584 -4.7814 2.1861 18 6 0.5644 -6.0780 2.0630 19 6 1.6460 -6.9591 2.0224 20 6 1.4298 -8.3688 1.8938 21 7 1.2580 -9.4871 1.7926 22 6 2.9487 -6.4435 2.1087 23 6 3.1063 -5.0775 2.2316 24 9 4.3415 -4.5371 2.3184 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6767 1.9563 0.8898 32 1 1.6053 -0.2616 2.1370 33 1 3.1262 -0.6443 1.2953 34 1 2.0697 -2.6551 0.3005 35 1 0.5488 -2.2723 1.1422 36 1 0.4649 -2.8459 3.6740 37 1 1.3486 -1.3073 3.5327 38 1 4.9894 -1.1991 4.0762 39 1 -0.4421 -6.4639 1.9977 40 1 3.8064 -7.0993 2.0797 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413196620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:22 Heat of formation + Delta-G solvation = 10.416647 kcal Electronic energy + Delta-G solvation = -23522.898315 eV Core-core repulsion = 20059.026500 eV Total energy + Delta-G solvation = -3463.871815 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.64362 -41.43013 -38.88050 -37.62877 -36.49572 -34.40938 -33.34548 -31.64689 -30.12610 -28.36364 -27.90664 -25.30389 -24.68367 -24.41243 -22.22949 -20.61108 -20.31625 -18.73976 -18.41388 -17.38242 -17.11232 -16.82421 -16.57073 -16.03942 -15.78914 -15.43557 -15.08726 -14.76299 -14.58274 -14.38232 -14.34691 -14.20803 -14.03182 -13.70918 -13.53878 -13.45222 -13.15768 -12.98048 -12.77562 -12.63605 -12.40690 -12.03270 -11.73486 -11.53139 -11.40206 -11.22001 -11.11426 -10.85663 -10.80850 -10.41418 -9.67451 -8.96609 -7.94149 -6.12342 -0.55782 0.06639 1.43215 1.46028 1.48460 1.50848 1.81569 2.49929 2.53097 2.72727 2.87741 3.28395 3.50111 3.55106 3.66780 3.98634 4.08894 4.19572 4.26452 4.38371 4.49550 4.64657 4.73787 4.77433 4.83483 4.89973 4.93307 5.03132 5.10610 5.16408 5.22080 5.29067 5.39812 5.40506 5.50490 5.66804 5.73215 5.79880 6.20758 6.30816 6.47262 6.77029 6.80411 6.99726 7.59789 9.07998 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.006913 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.037208 B = 4049.217372 C = 5920.300513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.086 4.086 5 C 0.074 3.926 6 N -0.477 5.477 7 C 0.209 3.791 8 C -0.566 4.566 9 H 0.037 0.963 10 C 0.062 3.938 11 N -0.851 5.851 12 Si 0.924 3.076 13 H -0.280 1.280 14 H -0.283 1.283 15 H -0.276 1.276 16 C 0.326 3.674 17 N -0.509 5.509 18 C 0.162 3.838 19 C -0.072 4.072 20 C 0.295 3.705 21 N -0.443 5.443 22 C -0.051 4.051 23 C 0.055 3.945 24 F -0.125 7.125 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.038 0.962 36 H -0.003 1.003 37 H 0.029 0.971 38 H 0.256 0.744 39 H 0.200 0.800 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 -2.142 -8.987 10.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.197 4.197 4 C -0.124 4.124 5 C -0.052 4.052 6 N -0.201 5.201 7 C 0.086 3.914 8 C -0.604 4.604 9 H 0.055 0.945 10 C -0.145 4.145 11 N -0.485 5.485 12 Si 0.751 3.249 13 H -0.206 1.206 14 H -0.208 1.208 15 H -0.201 1.201 16 C 0.097 3.903 17 N -0.221 5.221 18 C -0.001 4.001 19 C -0.078 4.078 20 C -0.020 4.020 21 N -0.119 5.119 22 C -0.080 4.080 23 C 0.032 3.968 24 F -0.103 7.103 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.217 0.783 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.581 -3.008 -9.123 10.642 hybrid contribution 1.099 -0.262 1.183 1.636 sum -3.482 -3.270 -7.939 9.266 Atomic orbital electron populations 1.21838 0.94705 1.01617 1.01775 1.21104 0.96302 0.96410 0.97303 1.21765 1.00651 0.95521 1.01785 1.21375 1.00586 0.93260 0.97146 1.22028 0.97120 0.95092 0.90977 1.60529 1.58302 0.97191 1.04082 1.19564 0.90465 0.95141 0.86239 1.21083 0.99898 1.34606 1.04812 0.94483 1.25307 0.98028 0.94166 0.97029 1.70087 1.14347 1.31811 1.32224 0.86189 0.78662 0.78324 0.81772 1.20610 1.20806 1.20113 1.20583 0.87166 0.93057 0.89493 1.68133 1.24370 1.15295 1.14300 1.23289 0.99785 0.86601 0.90433 1.16599 0.94153 0.85961 1.11038 1.24958 0.93006 0.91552 0.92524 1.81281 1.08134 1.12149 1.10294 1.21730 0.98546 0.92613 0.95077 1.18417 0.81077 0.91637 1.05684 1.91527 1.38798 1.86602 1.93398 0.93471 0.91315 0.93006 0.91031 0.93374 0.91161 0.93472 0.93764 0.93158 0.92505 0.94382 0.98434 0.95286 0.93464 0.78318 0.80363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.95 71.98 0.64 -2.81 16 2 C -0.09 -2.52 2.92 -10.79 -0.03 -2.55 16 3 C -0.14 -3.49 9.19 71.98 0.66 -2.83 16 4 C -0.09 -3.12 4.65 30.59 0.14 -2.97 16 5 C 0.07 2.76 4.51 86.30 0.39 3.15 16 6 N -0.48 -20.96 3.55 -705.95 -2.51 -23.47 16 7 C 0.21 10.20 4.76 85.56 0.41 10.61 16 8 C -0.57 -30.39 9.01 25.60 0.23 -30.16 16 9 H 0.04 2.03 7.81 -2.91 -0.02 2.01 16 10 C 0.06 3.28 5.39 84.66 0.46 3.73 16 11 N -0.85 -45.92 12.77 21.45 0.27 -45.65 16 12 Si 0.92 42.66 29.54 68.60 2.03 44.68 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 C 0.33 12.87 4.88 133.22 0.65 13.52 16 17 N -0.51 -17.36 9.40 -192.06 -1.80 -19.17 16 18 C 0.16 4.08 10.91 85.04 0.93 5.01 16 19 C -0.07 -1.73 5.75 -21.20 -0.12 -1.85 16 20 C 0.30 6.95 15.37 88.33 1.36 8.30 16 21 N -0.44 -11.94 18.54 19.00 0.35 -11.58 16 22 C -0.05 -1.38 9.88 22.74 0.22 -1.16 16 23 C 0.06 2.04 7.34 22.54 0.17 2.20 16 24 F -0.12 -5.30 17.08 44.97 0.77 -4.53 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 1.29 6.57 -2.39 -0.02 1.28 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.04 1.81 6.25 -2.39 -0.01 1.79 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.06 2.00 8.05 -2.38 -0.02 1.98 16 35 H 0.04 1.37 6.54 -2.38 -0.02 1.35 16 36 H 0.00 -0.12 7.41 -2.38 -0.02 -0.14 16 37 H 0.03 1.50 5.89 -2.39 -0.01 1.48 16 38 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 39 H 0.20 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.18 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -60.13 345.64 6.26 -53.87 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.05 Total: 3.66 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 6.10 Total: 2.18 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -3.69 Total: -99.87 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.77 Total: -4.53 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -60.13 6.26 -53.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413196620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.290 kcal (2) G-P(sol) polarization free energy of solvation -60.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds