Wall clock time and date at job start Tue Mar 31 2020 06:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39569 * 125.92026 * 2 1 4 4 C 1.39471 * 107.42172 * 180.25972 * 3 2 1 5 5 C 1.38763 * 119.85386 * 179.74293 * 4 3 2 6 6 C 1.38140 * 119.94573 * 359.97438 * 5 4 3 7 7 C 1.38363 * 120.27468 * 359.97438 * 6 5 4 8 8 C 1.38341 * 120.22003 * 0.02562 * 7 6 5 9 9 F 1.35108 * 120.06235 * 180.02562 * 8 7 6 10 10 N 1.39438 * 107.43420 * 359.74030 * 4 3 2 11 11 H 0.97002 * 125.90122 * 180.02562 * 10 4 3 12 12 C 1.37157 * 125.92289 * 179.81069 * 2 1 3 13 13 N 1.30642 * 125.60771 * 359.97438 * 12 2 1 14 14 C 1.46506 * 119.99666 * 179.71917 * 13 12 2 15 15 C 1.52998 * 109.46656 * 120.00439 * 14 13 12 16 16 C 1.52992 * 109.47451 * 299.99876 * 15 14 13 17 17 C 1.52998 * 109.47322 * 60.00022 * 15 14 13 18 18 C 1.50706 * 109.46895 * 179.97438 * 15 14 13 19 19 H 1.07996 * 119.99940 * 0.02562 * 18 15 14 20 20 C 1.37878 * 120.00047 * 179.97438 * 18 15 14 21 21 N 1.31516 * 119.99788 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99993 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47057 * 60.00181 * 22 20 18 24 24 H 1.48504 * 109.47102 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47025 * 300.00206 * 22 20 18 26 26 H 1.08995 * 109.47013 * 270.21503 * 1 2 3 27 27 H 1.09001 * 109.47070 * 30.21562 * 1 2 3 28 28 H 1.08996 * 109.46906 * 150.21646 * 1 2 3 29 29 H 1.08001 * 120.02526 * 179.97438 * 5 4 3 30 30 H 1.08006 * 119.86135 * 180.02562 * 6 5 4 31 31 H 1.08004 * 119.88867 * 180.02562 * 7 6 5 32 32 H 1.08998 * 109.47174 * 239.99900 * 14 13 12 33 33 H 1.08995 * 109.47304 * 0.02562 * 14 13 12 34 34 H 1.09002 * 109.46985 * 60.00287 * 16 15 14 35 35 H 1.09000 * 109.47344 * 180.02562 * 16 15 14 36 36 H 1.09005 * 109.47280 * 300.00296 * 16 15 14 37 37 H 1.09006 * 109.47297 * 59.99681 * 17 15 14 38 38 H 1.09004 * 109.47429 * 179.97438 * 17 15 14 39 39 H 1.09002 * 109.47205 * 299.99769 * 17 15 14 40 40 H 0.97006 * 119.99837 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2839 1.1303 0.0000 4 6 3.6065 0.6878 -0.0060 5 6 4.6434 1.6099 -0.0128 6 6 4.3632 2.9626 -0.0141 7 6 3.0516 3.4033 -0.0091 8 6 2.0109 2.4919 -0.0024 9 9 0.7313 2.9258 0.0019 10 7 3.5806 -0.7064 -0.0036 11 1 4.3557 -1.2897 -0.0063 12 6 2.2698 -1.1107 0.0037 13 7 1.8559 -2.3498 0.0082 14 6 2.8273 -3.4465 0.0056 15 6 2.6317 -4.3040 1.2575 16 6 2.8396 -3.4416 2.5040 17 6 1.2137 -4.8786 1.2657 18 6 3.6305 -5.4325 1.2545 19 1 4.3346 -5.5282 0.4413 20 6 3.6460 -6.3421 2.2905 21 7 2.7889 -6.2252 3.2811 22 14 4.8846 -7.7405 2.2872 23 1 6.2608 -7.1828 2.2788 24 1 4.6955 -8.5722 3.5029 25 1 4.6824 -8.5778 1.0776 26 1 -0.3633 0.0039 1.0276 27 1 -0.3633 0.8881 -0.5172 28 1 -0.3633 -0.8919 -0.5105 29 1 5.6686 1.2703 -0.0170 30 1 5.1713 3.6792 -0.0197 31 1 2.8397 4.4623 -0.0106 32 1 2.6791 -4.0610 -0.8824 33 1 3.8375 -3.0372 0.0002 34 1 2.1168 -2.6256 2.5059 35 1 2.7006 -4.0526 3.3959 36 1 3.8498 -3.0322 2.4982 37 1 1.0655 -5.4931 0.3776 38 1 1.0745 -5.4899 2.1574 39 1 0.4910 -4.0627 1.2676 40 1 2.7996 -6.8654 4.0099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413413274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:37 Heat of formation + Delta-G solvation = 39.582718 kcal Electronic energy + Delta-G solvation = -23335.623662 eV Core-core repulsion = 19873.016583 eV Total energy + Delta-G solvation = -3462.607079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.94381 -41.69650 -37.60933 -36.19460 -34.46600 -33.06835 -30.87857 -30.10575 -28.65063 -27.18006 -25.50641 -25.26298 -24.63298 -22.75970 -22.02557 -20.42286 -18.56165 -18.22317 -17.47569 -16.23407 -16.11928 -15.88585 -15.54057 -15.35776 -15.08932 -14.65910 -14.64076 -14.02597 -13.33513 -13.22299 -13.09722 -12.81984 -12.55612 -12.16296 -11.83833 -11.81838 -11.69643 -11.19998 -11.13900 -10.73912 -10.66523 -10.50303 -10.20846 -10.08489 -9.76760 -9.41739 -8.98904 -8.94359 -8.44972 -8.32385 -8.26691 -6.86710 -5.90450 -4.02412 0.97661 1.22099 2.47805 3.15446 3.23169 3.31630 3.36817 3.39059 3.48230 4.11413 4.43788 4.51928 4.68608 4.92186 5.10101 5.14359 5.33974 5.42662 5.49383 5.56739 5.68180 5.80567 5.91656 6.14733 6.19161 6.29972 6.53179 6.55764 6.69347 6.90794 7.01970 7.11613 7.17752 7.24589 7.43906 7.53920 7.65827 7.76855 7.80690 8.19124 8.33639 8.53183 8.75682 8.99765 9.62509 11.09383 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.003888 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.351833 B = 7199.728160 C = 7808.670456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.525 5.525 3 C 0.074 3.926 4 C 0.136 3.864 5 C -0.130 4.130 6 C -0.090 4.090 7 C -0.155 4.155 8 C 0.098 3.902 9 F -0.139 7.139 10 N -0.669 5.669 11 H 0.433 0.567 12 C 0.564 3.436 13 N -0.587 5.587 14 C 0.091 3.909 15 C 0.074 3.926 16 C -0.123 4.123 17 C -0.117 4.117 18 C -0.510 4.510 19 H 0.051 0.949 20 C 0.066 3.934 21 N -0.883 5.883 22 Si 0.889 3.111 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.278 1.278 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.063 0.937 33 H 0.013 0.987 34 H 0.009 0.991 35 H 0.080 0.920 36 H 0.012 0.988 37 H 0.018 0.982 38 H 0.074 0.926 39 H 0.019 0.981 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 18.838 -6.521 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.233 5.233 3 C -0.030 4.030 4 C 0.030 3.970 5 C -0.153 4.153 6 C -0.111 4.111 7 C -0.176 4.176 8 C 0.074 3.926 9 F -0.118 7.118 10 N -0.302 5.302 11 H 0.276 0.724 12 C 0.202 3.798 13 N -0.323 5.323 14 C -0.038 4.038 15 C 0.073 3.927 16 C -0.180 4.180 17 C -0.175 4.175 18 C -0.549 4.549 19 H 0.069 0.931 20 C -0.135 4.135 21 N -0.522 5.522 22 Si 0.718 3.282 23 H -0.205 1.205 24 H -0.213 1.213 25 H -0.204 1.204 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.081 0.919 33 H 0.032 0.968 34 H 0.028 0.972 35 H 0.099 0.901 36 H 0.031 0.969 37 H 0.037 0.963 38 H 0.093 0.907 39 H 0.038 0.962 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.372 18.002 -6.345 19.091 hybrid contribution 1.635 -0.887 0.096 1.863 sum 1.264 17.115 -6.249 18.264 Atomic orbital electron populations 1.21689 0.74480 1.03841 1.02806 1.43469 1.05781 1.00985 1.73056 1.17978 0.89689 0.87799 1.07556 1.17946 0.92756 0.84675 1.01615 1.20140 0.97523 0.91598 1.06034 1.20573 0.95783 0.94467 1.00265 1.20731 0.91481 0.99142 1.06259 1.16521 0.79394 0.88193 1.08454 1.91463 1.35941 1.90014 1.94404 1.43180 1.08473 1.04020 1.74551 0.72389 1.19440 0.77528 0.88204 0.94627 1.72541 1.33638 0.94003 1.32077 1.22000 0.89966 0.90708 1.01140 1.18103 0.94376 0.91583 0.88626 1.21719 0.96029 0.97495 1.02784 1.21610 0.96305 0.98578 1.00997 1.21073 1.16759 1.10458 1.06592 0.93054 1.24887 0.95616 0.97489 0.95489 1.69841 1.35805 1.36292 1.10251 0.86711 0.81782 0.82423 0.77329 1.20485 1.21331 1.20353 0.91928 0.90652 0.89104 0.84956 0.84491 0.84316 0.91905 0.96817 0.97236 0.90113 0.96877 0.96329 0.90731 0.96223 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.49 10.81 59.85 0.65 2.14 16 2 N -0.53 -8.28 3.26 -122.51 -0.40 -8.68 16 3 C 0.07 1.05 6.82 -83.64 -0.57 0.48 16 4 C 0.14 1.84 7.22 -83.75 -0.60 1.24 16 5 C -0.13 -1.32 10.07 -39.42 -0.40 -1.72 16 6 C -0.09 -0.77 10.03 -39.57 -0.40 -1.16 16 7 C -0.16 -1.46 10.01 -39.50 -0.40 -1.85 16 8 C 0.10 1.20 7.32 -39.31 -0.29 0.91 16 9 F -0.14 -1.71 15.87 2.25 0.04 -1.68 16 10 N -0.67 -10.34 6.00 -11.28 -0.07 -10.41 16 11 H 0.43 6.28 7.24 -40.82 -0.30 5.99 16 12 C 0.56 10.11 8.39 -320.61 -2.69 7.42 16 13 N -0.59 -12.03 8.88 -61.88 -0.55 -12.58 16 14 C 0.09 2.01 5.21 -4.04 -0.02 1.99 16 15 C 0.07 1.87 0.57 -155.66 -0.09 1.78 16 16 C -0.12 -3.10 8.09 37.15 0.30 -2.80 16 17 C -0.12 -3.00 8.09 37.16 0.30 -2.70 16 18 C -0.51 -13.88 8.01 -34.44 -0.28 -14.16 16 19 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 20 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 21 N -0.88 -24.89 9.35 55.43 0.52 -24.37 16 22 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.83 7.03 -51.93 -0.36 0.47 16 28 H 0.09 1.22 8.06 -51.93 -0.42 0.80 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 31 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.01 0.28 6.05 -51.93 -0.31 -0.04 16 34 H 0.01 0.22 7.60 -51.93 -0.39 -0.18 16 35 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 2.07 6.07 -51.93 -0.32 1.75 16 39 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -30.48 328.56 -10.42 -40.90 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.31 Total: 2.43 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -4.57 Total: -6.73 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.50 Total: -56.04 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.48 -10.42 -40.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413413274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.481 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds