Wall clock time and date at job start Tue Mar 31 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39569 * 125.92026 * 2 1 4 4 C 1.39471 * 107.42172 * 180.25972 * 3 2 1 5 5 C 1.38763 * 119.85386 * 179.74293 * 4 3 2 6 6 C 1.38140 * 119.94573 * 359.97438 * 5 4 3 7 7 C 1.38363 * 120.27468 * 359.97438 * 6 5 4 8 8 C 1.38341 * 120.22003 * 0.02562 * 7 6 5 9 9 F 1.35108 * 120.06235 * 180.02562 * 8 7 6 10 10 N 1.39438 * 107.43420 * 359.74030 * 4 3 2 11 11 H 0.97002 * 125.90122 * 180.02562 * 10 4 3 12 12 C 1.37157 * 125.92289 * 179.81069 * 2 1 3 13 13 N 1.30642 * 125.60771 * 359.97438 * 12 2 1 14 14 C 1.46506 * 119.99666 * 179.71917 * 13 12 2 15 15 C 1.52998 * 109.46656 * 120.00439 * 14 13 12 16 16 C 1.52992 * 109.47451 * 299.99876 * 15 14 13 17 17 C 1.52998 * 109.47322 * 60.00022 * 15 14 13 18 18 C 1.50706 * 109.46895 * 179.97438 * 15 14 13 19 19 H 1.07996 * 119.99940 * 0.02562 * 18 15 14 20 20 C 1.37878 * 120.00047 * 179.97438 * 18 15 14 21 21 N 1.31516 * 119.99788 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99993 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47057 * 60.00181 * 22 20 18 24 24 H 1.48504 * 109.47102 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47025 * 300.00206 * 22 20 18 26 26 H 1.08995 * 109.47013 * 270.21503 * 1 2 3 27 27 H 1.09001 * 109.47070 * 30.21562 * 1 2 3 28 28 H 1.08996 * 109.46906 * 150.21646 * 1 2 3 29 29 H 1.08001 * 120.02526 * 179.97438 * 5 4 3 30 30 H 1.08006 * 119.86135 * 180.02562 * 6 5 4 31 31 H 1.08004 * 119.88867 * 180.02562 * 7 6 5 32 32 H 1.08998 * 109.47174 * 239.99900 * 14 13 12 33 33 H 1.08995 * 109.47304 * 0.02562 * 14 13 12 34 34 H 1.09002 * 109.46985 * 60.00287 * 16 15 14 35 35 H 1.09000 * 109.47344 * 180.02562 * 16 15 14 36 36 H 1.09005 * 109.47280 * 300.00296 * 16 15 14 37 37 H 1.09006 * 109.47297 * 59.99681 * 17 15 14 38 38 H 1.09004 * 109.47429 * 179.97438 * 17 15 14 39 39 H 1.09002 * 109.47205 * 299.99769 * 17 15 14 40 40 H 0.97006 * 119.99837 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2839 1.1303 0.0000 4 6 3.6065 0.6878 -0.0060 5 6 4.6434 1.6099 -0.0128 6 6 4.3632 2.9626 -0.0141 7 6 3.0516 3.4033 -0.0091 8 6 2.0109 2.4919 -0.0024 9 9 0.7313 2.9258 0.0019 10 7 3.5806 -0.7064 -0.0036 11 1 4.3557 -1.2897 -0.0063 12 6 2.2698 -1.1107 0.0037 13 7 1.8559 -2.3498 0.0082 14 6 2.8273 -3.4465 0.0056 15 6 2.6317 -4.3040 1.2575 16 6 2.8396 -3.4416 2.5040 17 6 1.2137 -4.8786 1.2657 18 6 3.6305 -5.4325 1.2545 19 1 4.3346 -5.5282 0.4413 20 6 3.6460 -6.3421 2.2905 21 7 2.7889 -6.2252 3.2811 22 14 4.8846 -7.7405 2.2872 23 1 6.2608 -7.1828 2.2788 24 1 4.6955 -8.5722 3.5029 25 1 4.6824 -8.5778 1.0776 26 1 -0.3633 0.0039 1.0276 27 1 -0.3633 0.8881 -0.5172 28 1 -0.3633 -0.8919 -0.5105 29 1 5.6686 1.2703 -0.0170 30 1 5.1713 3.6792 -0.0197 31 1 2.8397 4.4623 -0.0106 32 1 2.6791 -4.0610 -0.8824 33 1 3.8375 -3.0372 0.0002 34 1 2.1168 -2.6256 2.5059 35 1 2.7006 -4.0526 3.3959 36 1 3.8498 -3.0322 2.4982 37 1 1.0655 -5.4931 0.3776 38 1 1.0745 -5.4899 2.1574 39 1 0.4910 -4.0627 1.2676 40 1 2.7996 -6.8654 4.0099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413413274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:36 Heat of formation + Delta-G solvation = 24.597814 kcal Electronic energy + Delta-G solvation = -23336.273456 eV Core-core repulsion = 19873.016583 eV Total energy + Delta-G solvation = -3463.256873 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.86718 -42.79527 -38.76790 -37.81102 -35.68425 -34.62112 -32.70718 -31.00534 -29.74740 -28.35066 -27.55756 -27.28113 -26.26864 -23.71716 -23.01770 -21.77717 -20.27404 -19.26749 -18.58443 -17.94729 -17.23268 -17.05140 -16.72456 -16.61501 -16.38692 -16.10605 -15.81386 -15.19016 -15.01824 -14.64059 -14.29148 -14.11974 -14.05300 -13.45629 -13.36685 -13.15926 -12.82174 -12.68033 -12.62187 -12.59498 -12.49805 -12.23170 -12.11107 -11.60139 -11.45189 -11.36932 -10.81312 -10.41598 -10.31654 -10.11829 -9.23875 -8.16461 -7.94822 -6.16878 0.09538 0.35025 1.33145 1.43184 1.44191 1.51345 1.80529 2.15628 2.45966 2.63738 3.19188 3.23512 3.56487 3.88093 3.93491 4.00856 4.31015 4.38059 4.44197 4.55313 4.61585 4.68872 4.74530 4.77815 4.86041 4.92090 5.14235 5.16926 5.20731 5.27827 5.39758 5.44645 5.47813 5.65037 5.65655 5.71588 5.88031 6.02161 6.12843 6.25228 6.42143 6.51910 6.90793 7.38662 7.51694 9.00340 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.003888 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.351833 B = 7199.728160 C = 7808.670456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.531 5.531 3 C 0.041 3.959 4 C 0.110 3.890 5 C -0.122 4.122 6 C -0.073 4.073 7 C -0.141 4.141 8 C 0.088 3.912 9 F -0.143 7.143 10 N -0.670 5.670 11 H 0.435 0.565 12 C 0.569 3.431 13 N -0.631 5.631 14 C 0.107 3.893 15 C 0.065 3.935 16 C -0.101 4.101 17 C -0.102 4.102 18 C -0.528 4.528 19 H 0.050 0.950 20 C 0.021 3.979 21 N -0.906 5.906 22 Si 0.951 3.049 23 H -0.272 1.272 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.156 0.844 30 H 0.181 0.819 31 H 0.171 0.829 32 H 0.049 0.951 33 H 0.021 0.979 34 H 0.009 0.991 35 H 0.053 0.947 36 H 0.013 0.987 37 H 0.012 0.988 38 H 0.049 0.951 39 H 0.022 0.978 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 21.583 -7.074 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.239 5.239 3 C -0.061 4.061 4 C 0.005 3.995 5 C -0.144 4.144 6 C -0.093 4.093 7 C -0.162 4.162 8 C 0.064 3.936 9 F -0.122 7.122 10 N -0.303 5.303 11 H 0.277 0.723 12 C 0.206 3.794 13 N -0.370 5.370 14 C -0.023 4.023 15 C 0.064 3.936 16 C -0.159 4.159 17 C -0.160 4.160 18 C -0.566 4.566 19 H 0.069 0.931 20 C -0.178 4.178 21 N -0.545 5.545 22 Si 0.777 3.223 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.200 1.200 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.174 0.826 30 H 0.198 0.802 31 H 0.189 0.811 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.068 0.932 39 H 0.041 0.959 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.502 20.842 -6.907 22.008 hybrid contribution 1.098 -1.443 0.250 1.831 sum 2.600 19.399 -6.658 20.674 Atomic orbital electron populations 1.21778 0.73686 1.04436 1.02992 1.43690 1.06473 1.01045 1.72690 1.18349 0.89813 0.88231 1.09741 1.18329 0.93636 0.83876 1.03650 1.20599 0.97873 0.91859 1.04116 1.21126 0.96575 0.94308 0.97282 1.21225 0.91057 1.00250 1.03663 1.16874 0.80023 0.87850 1.08846 1.91453 1.36398 1.89892 1.94486 1.43122 1.07590 1.05289 1.74335 0.72260 1.19599 0.78836 0.88244 0.92692 1.72480 1.33074 0.94600 1.36855 1.21578 0.90932 0.91119 0.98650 1.18152 0.93419 0.91837 0.90235 1.21465 0.95917 0.96852 1.01695 1.21424 0.97163 0.98060 0.99310 1.21385 1.17236 1.11363 1.06651 0.93138 1.25610 0.97278 0.99721 0.95183 1.69990 1.36997 1.36925 1.10621 0.85738 0.79797 0.79552 0.77244 1.19697 1.21174 1.19991 0.91939 0.88617 0.89893 0.82612 0.80157 0.81143 0.93317 0.96048 0.97219 0.92766 0.96792 0.96906 0.93176 0.95880 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.98 10.81 127.77 1.38 4.36 16 2 N -0.53 -16.79 3.26 -541.50 -1.77 -18.55 16 3 C 0.04 1.12 6.82 38.36 0.26 1.38 16 4 C 0.11 2.79 7.22 38.35 0.28 3.06 16 5 C -0.12 -2.05 10.07 22.37 0.23 -1.82 16 6 C -0.07 -0.86 10.03 22.28 0.22 -0.63 16 7 C -0.14 -2.03 10.01 22.32 0.22 -1.81 16 8 C 0.09 1.92 7.32 22.45 0.16 2.09 16 9 F -0.14 -3.25 15.87 44.97 0.71 -2.54 16 10 N -0.67 -20.53 6.00 -189.59 -1.14 -21.67 16 11 H 0.43 12.55 7.24 -92.71 -0.67 11.88 16 12 C 0.57 20.67 8.39 260.72 2.19 22.86 16 13 N -0.63 -26.59 8.88 -349.69 -3.11 -29.69 16 14 C 0.11 4.86 5.21 86.38 0.45 5.31 16 15 C 0.06 3.34 0.57 -52.93 -0.03 3.31 16 16 C -0.10 -5.25 8.09 71.98 0.58 -4.67 16 17 C -0.10 -5.40 8.09 71.98 0.58 -4.82 16 18 C -0.53 -29.18 8.01 25.60 0.21 -28.98 16 19 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 20 C 0.02 1.16 5.15 84.65 0.44 1.60 16 21 N -0.91 -52.18 9.35 21.45 0.20 -51.98 16 22 Si 0.95 43.70 29.54 68.60 2.03 45.72 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 26 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.10 2.08 7.03 -2.39 -0.02 2.07 16 28 H 0.08 2.32 8.06 -2.39 -0.02 2.30 16 29 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 30 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 31 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 32 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.02 0.89 6.05 -2.39 -0.01 0.88 16 34 H 0.01 0.45 7.60 -2.39 -0.02 0.43 16 35 H 0.05 3.08 6.07 -2.39 -0.01 3.06 16 36 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.05 2.87 6.07 -2.38 -0.01 2.86 16 39 H 0.02 1.15 7.60 -2.39 -0.02 1.13 16 40 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 Total: -1.00 -67.55 328.56 4.50 -63.05 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.39 Total: 14.43 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 7.17 Total: 1.23 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -5.81 Total: -121.89 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.71 Total: -2.54 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -67.55 4.50 -63.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413413274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.648 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds