Wall clock time and date at job start Tue Mar 31 2020 06:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46970 * 2 1 4 4 C 1.50698 * 109.47452 * 120.00221 * 2 1 3 5 5 H 1.08001 * 119.99606 * 124.32170 * 4 2 1 6 6 C 1.37876 * 120.00094 * 304.32232 * 4 2 1 7 7 N 1.31507 * 119.99873 * 152.64015 * 6 4 2 8 8 Si 1.86801 * 119.99826 * 332.64688 * 6 4 2 9 9 H 1.48499 * 109.47068 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.46877 * 299.99591 * 8 6 4 11 11 H 1.48496 * 109.47572 * 59.99833 * 8 6 4 12 12 C 1.53005 * 109.46824 * 240.00545 * 2 1 3 13 13 N 1.46892 * 109.47560 * 59.99627 * 12 2 1 14 14 C 1.46899 * 111.00359 * 175.41803 * 13 12 2 15 15 H 1.09000 * 108.62185 * 175.64925 * 14 13 12 16 16 C 1.51883 * 108.65989 * 57.72994 * 14 13 12 17 17 C 1.53527 * 108.97899 * 178.44120 * 16 14 13 18 18 S 1.81621 * 107.30854 * 72.58317 * 17 16 14 19 19 C 1.76457 * 102.62430 * 313.54260 * 18 17 16 20 20 C 1.39626 * 117.72300 * 192.72585 * 19 18 17 21 21 C 1.37734 * 120.62655 * 181.40598 * 20 19 18 22 22 C 1.38353 * 119.51097 * 359.96720 * 21 20 19 23 23 C 1.37767 * 120.00724 * 359.62526 * 22 21 20 24 24 C 1.38183 * 122.29450 * 13.42188 * 19 18 17 25 25 H 1.09002 * 109.47206 * 291.52191 * 1 2 3 26 26 H 1.09002 * 109.47218 * 51.52300 * 1 2 3 27 27 H 1.09000 * 109.47097 * 171.52298 * 1 2 3 28 28 H 1.09004 * 109.47058 * 172.20227 * 3 2 1 29 29 H 1.09001 * 109.47211 * 292.19923 * 3 2 1 30 30 H 1.08990 * 109.47072 * 52.20203 * 3 2 1 31 31 H 0.96991 * 120.00652 * 354.87119 * 7 6 4 32 32 H 1.09000 * 109.47259 * 180.02562 * 12 2 1 33 33 H 1.09004 * 109.47175 * 299.99566 * 12 2 1 34 34 H 1.00901 * 111.00206 * 299.37267 * 13 12 2 35 35 H 1.08990 * 109.55196 * 298.29078 * 16 14 13 36 36 H 1.08999 * 109.55220 * 58.59600 * 16 14 13 37 37 H 1.08995 * 109.89545 * 313.13128 * 17 16 14 38 38 H 1.08999 * 109.88822 * 192.02807 * 17 16 14 39 39 H 1.08000 * 119.68387 * 1.42725 * 20 19 18 40 40 H 1.08001 * 120.24784 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.99421 * 179.62854 * 22 21 20 42 42 H 1.08005 * 119.46917 * 180.08799 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.7096 -1.5460 1.1327 6 6 1.6275 -0.2937 2.4807 7 7 1.5878 -1.1497 3.4782 8 14 1.1352 1.4869 2.7577 9 1 0.7436 1.6771 4.1775 10 1 2.2832 2.3732 2.4385 11 1 -0.0118 1.8261 1.8777 12 6 2.0399 -0.7212 -1.2494 13 7 1.5502 -0.0287 -2.4487 14 6 2.1086 -0.6286 -3.6679 15 1 1.6619 -0.1384 -4.5330 16 6 1.7353 -2.1005 -3.7002 17 6 2.2821 -2.7260 -4.9912 18 16 4.0836 -2.8619 -4.8050 19 6 4.5272 -1.2739 -4.1763 20 6 5.8812 -0.9333 -4.1687 21 6 6.2970 0.2792 -3.6647 22 6 5.3609 1.1657 -3.1628 23 6 4.0233 0.8362 -3.1765 24 6 3.5887 -0.3844 -3.6887 25 1 -0.3634 0.3770 0.9560 26 1 -0.3634 0.6394 -0.8045 27 1 -0.3633 -1.0164 -0.1515 28 1 3.1210 1.4457 0.1394 29 1 1.7950 1.9145 -0.9515 30 1 1.5673 1.9949 0.8120 31 1 1.7711 -2.0888 3.3191 32 1 3.1299 -0.7216 -1.2492 33 1 1.6766 -1.7489 -1.2494 34 1 0.5416 -0.0242 -2.4772 35 1 2.1694 -2.6058 -2.8376 36 1 0.6503 -2.2022 -3.6766 37 1 2.0444 -2.0878 -5.8422 38 1 1.8487 -3.7156 -5.1362 39 1 6.6094 -1.6272 -4.5621 40 1 7.3460 0.5362 -3.6615 41 1 5.6788 2.1161 -2.7602 42 1 3.2998 1.5354 -2.7837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414161022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:57 Heat of formation + Delta-G solvation = 32.386530 kcal Electronic energy + Delta-G solvation = -21950.113489 eV Core-core repulsion = 19021.114785 eV Total energy + Delta-G solvation = -2928.998704 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.91 seconds Orbital eigenvalues (eV) -39.73723 -37.44183 -35.57757 -32.47577 -31.28813 -30.65753 -30.37984 -26.22440 -26.15799 -24.75929 -23.56911 -23.01346 -22.49191 -20.21193 -18.82917 -17.44469 -16.87321 -15.94975 -15.80149 -15.54969 -14.70633 -14.65833 -14.21413 -13.82261 -13.40329 -13.36288 -13.02562 -12.88028 -12.75423 -12.42770 -12.36879 -12.19240 -11.87373 -11.68854 -11.30272 -11.20616 -10.91848 -10.58247 -10.32841 -10.11044 -10.03223 -9.88501 -9.84056 -9.56986 -8.89635 -8.77722 -8.57820 -8.09310 -7.96931 -7.36796 -6.44017 -4.00082 1.30524 1.50616 1.58677 2.36568 3.41067 3.47989 3.69123 3.81301 4.39950 4.53789 4.62183 4.63462 4.85987 5.05118 5.14833 5.19652 5.24028 5.38366 5.45906 5.51141 5.61873 5.75560 5.86832 5.98671 6.04339 6.14606 6.20011 6.33697 6.39238 6.49250 6.58980 6.64548 6.67156 6.72403 6.88237 6.93247 7.03229 7.07643 7.40284 7.43761 7.59710 7.77648 8.31472 8.41497 8.93935 9.63706 10.91989 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.005236 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.718623 B = 5346.708763 C = 5857.652767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 C -0.139 4.139 4 C -0.605 4.605 5 H 0.054 0.946 6 C 0.041 3.959 7 N -0.896 5.896 8 Si 1.053 2.947 9 H -0.303 1.303 10 H -0.289 1.289 11 H -0.278 1.278 12 C 0.082 3.918 13 N -0.678 5.678 14 C 0.123 3.877 15 H 0.085 0.915 16 C -0.159 4.159 17 C -0.097 4.097 18 S -0.138 6.138 19 C -0.074 4.074 20 C -0.111 4.111 21 C -0.107 4.107 22 C -0.129 4.129 23 C -0.072 4.072 24 C -0.072 4.072 25 H 0.053 0.947 26 H 0.026 0.974 27 H 0.035 0.965 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.030 0.970 31 H 0.269 0.731 32 H 0.064 0.936 33 H 0.022 0.978 34 H 0.341 0.659 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 1.417 -18.224 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.047 3.953 3 C -0.196 4.196 4 C -0.642 4.642 5 H 0.072 0.928 6 C -0.165 4.165 7 N -0.528 5.528 8 Si 0.886 3.114 9 H -0.231 1.231 10 H -0.216 1.216 11 H -0.205 1.205 12 C -0.046 4.046 13 N -0.308 5.308 14 C 0.013 3.987 15 H 0.103 0.897 16 C -0.199 4.199 17 C -0.246 4.246 18 S 0.104 5.896 19 C -0.186 4.186 20 C -0.134 4.134 21 C -0.127 4.127 22 C -0.149 4.149 23 C -0.092 4.092 24 C -0.078 4.078 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.160 0.840 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.373 1.928 -17.301 17.732 hybrid contribution -0.686 -0.962 -0.847 1.454 sum 2.687 0.966 -18.148 18.372 Atomic orbital electron populations 1.22225 0.98772 0.99002 1.00027 1.18368 0.91513 0.92395 0.92988 1.22196 1.00290 0.98445 0.98649 1.21770 1.32807 1.18535 0.91095 0.92803 1.25648 0.93634 1.04665 0.92551 1.70842 1.42342 1.04299 1.35364 0.84208 0.76769 0.76532 0.73919 1.23104 1.21641 1.20547 1.22023 0.99595 0.94552 0.88389 1.60794 1.13224 1.55782 1.01036 1.20062 0.91355 0.92146 0.95145 0.89734 1.22456 1.02096 0.98118 0.97259 1.23685 0.94047 1.05482 1.01355 1.85371 1.07760 1.15416 1.81082 1.21281 0.96247 0.96799 1.04318 1.20757 0.93385 0.97359 1.01863 1.20992 0.99439 0.93737 0.98495 1.21152 0.93420 0.99940 1.00377 1.21428 0.95953 0.96131 0.95650 1.19454 0.93907 0.94823 0.99660 0.92860 0.95462 0.94554 0.93712 0.93752 0.95194 0.92125 0.91799 0.95955 0.83955 0.89430 0.90064 0.89242 0.87412 0.86069 0.85885 0.85957 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 7.58 37.16 0.28 -2.75 16 2 C 0.05 1.10 0.57 -155.66 -0.09 1.01 16 3 C -0.14 -2.98 7.44 37.16 0.28 -2.71 16 4 C -0.60 -16.68 8.42 -34.44 -0.29 -16.97 16 5 H 0.05 1.63 7.99 -52.49 -0.42 1.21 16 6 C 0.04 1.18 5.08 -17.82 -0.09 1.09 16 7 N -0.90 -27.40 13.69 55.43 0.76 -26.64 16 8 Si 1.05 25.93 23.29 -169.99 -3.96 21.97 16 9 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 10 H -0.29 -6.82 6.77 56.52 0.38 -6.44 16 11 H -0.28 -6.31 5.66 56.52 0.32 -5.99 16 12 C 0.08 1.60 3.61 -3.83 -0.01 1.59 16 13 N -0.68 -10.41 4.16 -108.91 -0.45 -10.86 16 14 C 0.12 1.66 2.66 -69.76 -0.19 1.47 16 15 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 16 C -0.16 -1.98 4.70 -27.03 -0.13 -2.11 16 17 C -0.10 -1.04 6.53 37.43 0.24 -0.79 16 18 S -0.14 -1.80 21.99 -107.50 -2.36 -4.17 16 19 C -0.07 -1.07 6.05 -39.08 -0.24 -1.31 16 20 C -0.11 -1.49 9.65 -39.25 -0.38 -1.87 16 21 C -0.11 -1.35 10.06 -39.72 -0.40 -1.75 16 22 C -0.13 -1.74 10.03 -39.71 -0.40 -2.14 16 23 C -0.07 -1.07 8.37 -39.35 -0.33 -1.40 16 24 C -0.07 -1.07 4.58 -104.56 -0.48 -1.54 16 25 H 0.05 1.23 4.45 -51.93 -0.23 0.99 16 26 H 0.03 0.49 7.13 -51.93 -0.37 0.12 16 27 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 28 H 0.04 0.98 8.13 -51.93 -0.42 0.56 16 29 H 0.04 0.83 7.37 -51.93 -0.38 0.45 16 30 H 0.03 0.66 2.87 -51.93 -0.15 0.51 16 31 H 0.27 8.19 8.73 -40.82 -0.36 7.83 16 32 H 0.06 1.37 6.67 -51.93 -0.35 1.02 16 33 H 0.02 0.45 6.50 -51.93 -0.34 0.12 16 34 H 0.34 4.91 7.26 -39.29 -0.29 4.63 16 35 H 0.09 1.33 6.36 -51.93 -0.33 1.00 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.12 1.44 8.05 -52.49 -0.42 1.02 16 40 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 41 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.14 2.15 7.23 -52.48 -0.38 1.77 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -29.60 323.47 -9.64 -39.24 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.28 Total: 5.76 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: -2.21 Total: -30.17 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.31 Total: -37.50 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -3.96 Total: 21.97 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.36 Total: -4.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.60 -9.64 -39.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414161022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.626 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.91 seconds