Wall clock time and date at job start Tue Mar 31 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46970 * 2 1 4 4 C 1.50698 * 109.47452 * 120.00221 * 2 1 3 5 5 H 1.08001 * 119.99606 * 124.32170 * 4 2 1 6 6 C 1.37876 * 120.00094 * 304.32232 * 4 2 1 7 7 N 1.31507 * 119.99873 * 152.64015 * 6 4 2 8 8 Si 1.86801 * 119.99826 * 332.64688 * 6 4 2 9 9 H 1.48499 * 109.47068 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.46877 * 299.99591 * 8 6 4 11 11 H 1.48496 * 109.47572 * 59.99833 * 8 6 4 12 12 C 1.53005 * 109.46824 * 240.00545 * 2 1 3 13 13 N 1.46892 * 109.47560 * 59.99627 * 12 2 1 14 14 C 1.46899 * 111.00359 * 175.41803 * 13 12 2 15 15 H 1.09000 * 108.62185 * 175.64925 * 14 13 12 16 16 C 1.51883 * 108.65989 * 57.72994 * 14 13 12 17 17 C 1.53527 * 108.97899 * 178.44120 * 16 14 13 18 18 S 1.81621 * 107.30854 * 72.58317 * 17 16 14 19 19 C 1.76457 * 102.62430 * 313.54260 * 18 17 16 20 20 C 1.39626 * 117.72300 * 192.72585 * 19 18 17 21 21 C 1.37734 * 120.62655 * 181.40598 * 20 19 18 22 22 C 1.38353 * 119.51097 * 359.96720 * 21 20 19 23 23 C 1.37767 * 120.00724 * 359.62526 * 22 21 20 24 24 C 1.38183 * 122.29450 * 13.42188 * 19 18 17 25 25 H 1.09002 * 109.47206 * 291.52191 * 1 2 3 26 26 H 1.09002 * 109.47218 * 51.52300 * 1 2 3 27 27 H 1.09000 * 109.47097 * 171.52298 * 1 2 3 28 28 H 1.09004 * 109.47058 * 172.20227 * 3 2 1 29 29 H 1.09001 * 109.47211 * 292.19923 * 3 2 1 30 30 H 1.08990 * 109.47072 * 52.20203 * 3 2 1 31 31 H 0.96991 * 120.00652 * 354.87119 * 7 6 4 32 32 H 1.09000 * 109.47259 * 180.02562 * 12 2 1 33 33 H 1.09004 * 109.47175 * 299.99566 * 12 2 1 34 34 H 1.00901 * 111.00206 * 299.37267 * 13 12 2 35 35 H 1.08990 * 109.55196 * 298.29078 * 16 14 13 36 36 H 1.08999 * 109.55220 * 58.59600 * 16 14 13 37 37 H 1.08995 * 109.89545 * 313.13128 * 17 16 14 38 38 H 1.08999 * 109.88822 * 192.02807 * 17 16 14 39 39 H 1.08000 * 119.68387 * 1.42725 * 20 19 18 40 40 H 1.08001 * 120.24784 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.99421 * 179.62854 * 22 21 20 42 42 H 1.08005 * 119.46917 * 180.08799 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.7096 -1.5460 1.1327 6 6 1.6275 -0.2937 2.4807 7 7 1.5878 -1.1497 3.4782 8 14 1.1352 1.4869 2.7577 9 1 0.7436 1.6771 4.1775 10 1 2.2832 2.3732 2.4385 11 1 -0.0118 1.8261 1.8777 12 6 2.0399 -0.7212 -1.2494 13 7 1.5502 -0.0287 -2.4487 14 6 2.1086 -0.6286 -3.6679 15 1 1.6619 -0.1384 -4.5330 16 6 1.7353 -2.1005 -3.7002 17 6 2.2821 -2.7260 -4.9912 18 16 4.0836 -2.8619 -4.8050 19 6 4.5272 -1.2739 -4.1763 20 6 5.8812 -0.9333 -4.1687 21 6 6.2970 0.2792 -3.6647 22 6 5.3609 1.1657 -3.1628 23 6 4.0233 0.8362 -3.1765 24 6 3.5887 -0.3844 -3.6887 25 1 -0.3634 0.3770 0.9560 26 1 -0.3634 0.6394 -0.8045 27 1 -0.3633 -1.0164 -0.1515 28 1 3.1210 1.4457 0.1394 29 1 1.7950 1.9145 -0.9515 30 1 1.5673 1.9949 0.8120 31 1 1.7711 -2.0888 3.3191 32 1 3.1299 -0.7216 -1.2492 33 1 1.6766 -1.7489 -1.2494 34 1 0.5416 -0.0242 -2.4772 35 1 2.1694 -2.6058 -2.8376 36 1 0.6503 -2.2022 -3.6766 37 1 2.0444 -2.0878 -5.8422 38 1 1.8487 -3.7156 -5.1362 39 1 6.6094 -1.6272 -4.5621 40 1 7.3460 0.5362 -3.6615 41 1 5.6788 2.1161 -2.7602 42 1 3.2998 1.5354 -2.7837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414161022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:53 Heat of formation + Delta-G solvation = 15.115049 kcal Electronic energy + Delta-G solvation = -21950.862437 eV Core-core repulsion = 19021.114785 eV Total energy + Delta-G solvation = -2929.747652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 4.01 seconds Orbital eigenvalues (eV) -40.85281 -38.80597 -37.04102 -34.25314 -32.76357 -31.67263 -31.54482 -27.89286 -27.54548 -26.61423 -25.05769 -24.07441 -23.53805 -21.47643 -20.49635 -18.92005 -18.42575 -17.27266 -16.92019 -16.60901 -16.35150 -15.90635 -15.46740 -15.19997 -14.70120 -14.60831 -14.39943 -14.15636 -14.09971 -14.00439 -13.62722 -13.48017 -13.43202 -13.39046 -12.60077 -12.40199 -12.16630 -12.15520 -11.93129 -11.77541 -11.66155 -11.50321 -11.11192 -10.89639 -10.62114 -10.56173 -10.25515 -9.65092 -9.31230 -8.71315 -8.38669 -6.27295 0.26590 0.45312 0.61502 1.40121 1.44399 1.51913 1.74370 2.49613 2.76469 3.01768 3.23790 3.60930 3.68530 3.88390 4.06122 4.18781 4.20081 4.28916 4.38731 4.47637 4.51371 4.54869 4.62826 4.68513 4.74954 4.86197 4.87470 4.93777 4.96538 5.09335 5.11374 5.13909 5.22294 5.30920 5.38335 5.53725 5.65081 5.66065 5.88889 5.99512 6.04315 6.08588 6.28139 6.56414 6.65289 7.44953 8.62886 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.005236 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.718623 B = 5346.708763 C = 5857.652767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.042 3.958 3 C -0.133 4.133 4 C -0.605 4.605 5 H 0.008 0.992 6 C -0.007 4.007 7 N -0.933 5.933 8 Si 1.088 2.912 9 H -0.313 1.313 10 H -0.272 1.272 11 H -0.240 1.240 12 C 0.107 3.893 13 N -0.668 5.668 14 C 0.125 3.875 15 H 0.110 0.890 16 C -0.155 4.155 17 C -0.085 4.085 18 S -0.161 6.161 19 C -0.090 4.090 20 C -0.123 4.123 21 C -0.107 4.107 22 C -0.137 4.137 23 C -0.089 4.089 24 C -0.089 4.089 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.031 0.969 28 H 0.030 0.970 29 H 0.076 0.924 30 H 0.027 0.973 31 H 0.253 0.747 32 H 0.038 0.962 33 H 0.006 0.994 34 H 0.352 0.648 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.127 0.873 39 H 0.133 0.867 40 H 0.150 0.850 41 H 0.140 0.860 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.734 3.302 -20.664 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.041 3.959 3 C -0.190 4.190 4 C -0.643 4.643 5 H 0.026 0.974 6 C -0.207 4.207 7 N -0.568 5.568 8 Si 0.915 3.085 9 H -0.243 1.243 10 H -0.199 1.199 11 H -0.165 1.165 12 C -0.022 4.022 13 N -0.299 5.299 14 C 0.015 3.985 15 H 0.128 0.872 16 C -0.195 4.195 17 C -0.234 4.234 18 S 0.081 5.919 19 C -0.203 4.203 20 C -0.146 4.146 21 C -0.127 4.127 22 C -0.157 4.157 23 C -0.109 4.109 24 C -0.095 4.095 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.024 0.976 34 H 0.172 0.828 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.168 0.832 41 H 0.158 0.842 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.340 3.809 -19.786 20.285 hybrid contribution -0.271 -1.659 -0.143 1.687 sum 2.069 2.150 -19.930 20.152 Atomic orbital electron populations 1.22119 0.97130 0.99718 1.00600 1.18371 0.92696 0.93023 0.91854 1.22095 0.99327 0.97319 1.00276 1.22038 1.31354 1.17206 0.93729 0.97368 1.26960 0.93504 1.07711 0.92493 1.70965 1.45541 1.03793 1.36463 0.83797 0.78468 0.72267 0.74013 1.24256 1.19854 1.16476 1.21510 0.97832 0.93642 0.89247 1.60637 1.13867 1.55159 1.00224 1.20161 0.90812 0.92855 0.94650 0.87191 1.22360 1.03045 0.97196 0.96898 1.23760 0.91698 1.06947 1.00972 1.85405 1.10391 1.15186 1.80961 1.21496 0.96815 0.97213 1.04732 1.21062 0.93491 0.98066 1.01950 1.21331 1.00770 0.93156 0.97431 1.21444 0.93218 1.00883 1.00200 1.21517 0.96603 0.96328 0.96433 1.19651 0.94712 0.94987 1.00129 0.94553 0.91404 0.94944 0.95075 0.90513 0.95442 0.93821 0.94347 0.97614 0.82770 0.92762 0.88157 0.87182 0.85463 0.84946 0.83209 0.84236 0.84555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 7.58 71.98 0.55 -4.97 16 2 C 0.04 1.84 0.57 -52.93 -0.03 1.81 16 3 C -0.13 -5.40 7.44 71.98 0.54 -4.86 16 4 C -0.61 -34.32 8.42 25.60 0.22 -34.11 16 5 H 0.01 0.51 7.99 -2.91 -0.02 0.49 16 6 C -0.01 -0.43 5.08 84.66 0.43 0.00 16 7 N -0.93 -59.16 13.69 21.45 0.29 -58.86 16 8 Si 1.09 51.46 23.29 68.60 1.60 53.06 16 9 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 10 H -0.27 -12.06 6.77 99.48 0.67 -11.38 16 11 H -0.24 -9.87 5.66 99.48 0.56 -9.30 16 12 C 0.11 4.11 3.61 86.31 0.31 4.42 16 13 N -0.67 -18.85 4.16 -498.48 -2.07 -20.92 16 14 C 0.13 3.07 2.66 43.59 0.12 3.19 16 15 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 16 C -0.15 -3.56 4.70 30.40 0.14 -3.42 16 17 C -0.09 -1.62 6.53 72.16 0.47 -1.15 16 18 S -0.16 -4.06 21.99 -56.49 -1.24 -5.30 16 19 C -0.09 -2.54 6.05 22.59 0.14 -2.40 16 20 C -0.12 -3.21 9.65 22.49 0.22 -2.99 16 21 C -0.11 -2.56 10.06 22.18 0.22 -2.34 16 22 C -0.14 -3.52 10.03 22.19 0.22 -3.29 16 23 C -0.09 -2.53 8.37 22.42 0.19 -2.34 16 24 C -0.09 -2.51 4.58 -19.82 -0.09 -2.60 16 25 H 0.04 1.56 4.45 -2.39 -0.01 1.55 16 26 H 0.07 2.15 7.13 -2.39 -0.02 2.13 16 27 H 0.03 1.28 8.13 -2.39 -0.02 1.26 16 28 H 0.03 1.31 8.13 -2.38 -0.02 1.29 16 29 H 0.08 2.60 7.37 -2.39 -0.02 2.58 16 30 H 0.03 1.12 2.87 -2.39 -0.01 1.11 16 31 H 0.25 16.29 8.73 -92.71 -0.81 15.48 16 32 H 0.04 1.67 6.67 -2.39 -0.02 1.66 16 33 H 0.01 0.24 6.50 -2.38 -0.02 0.22 16 34 H 0.35 8.79 7.26 -89.69 -0.65 8.14 16 35 H 0.05 1.64 6.36 -2.39 -0.02 1.62 16 36 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.11 1.70 8.08 -2.39 -0.02 1.68 16 38 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.13 3.04 8.05 -2.91 -0.02 3.02 16 40 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 41 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.14 3.91 7.23 -2.91 -0.02 3.89 16 Total: -1.00 -67.02 323.47 2.36 -64.66 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.15 Total: 22.42 kcal Atomic # 6 Polarization: -58.69 SS G_CDS: 3.63 Total: -55.05 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -1.78 Total: -79.79 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 1.60 Total: 53.06 kcal Atomic # 16 Polarization: -4.06 SS G_CDS: -1.24 Total: -5.30 kcal Total: -67.02 2.36 -64.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414161022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.776 kcal (2) G-P(sol) polarization free energy of solvation -67.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.01 seconds