Wall clock time and date at job start Tue Mar 31 2020 06:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47085 * 2 1 4 4 N 1.46899 * 109.47021 * 119.99212 * 2 1 3 5 5 C 1.46897 * 111.00528 * 275.00442 * 4 2 1 6 6 C 1.52999 * 109.47092 * 174.73764 * 5 4 2 7 7 C 1.50698 * 115.55061 * 65.17061 * 6 5 4 8 8 H 1.08001 * 119.99897 * 265.08854 * 7 6 5 9 9 C 1.37877 * 120.00172 * 85.09664 * 7 6 5 10 10 N 1.31517 * 119.99914 * 353.19949 * 9 7 6 11 11 Si 1.86795 * 120.00359 * 173.20649 * 9 7 6 12 12 H 1.48502 * 109.46824 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47135 * 119.99493 * 11 9 7 14 14 H 1.48493 * 109.47376 * 239.99714 * 11 9 7 15 15 C 1.52997 * 117.49714 * 279.49633 * 6 5 4 16 16 C 1.53002 * 117.49500 * 210.83956 * 6 5 4 17 17 C 1.52998 * 109.47706 * 239.99640 * 2 1 3 18 18 H 1.08996 * 115.54984 * 274.41835 * 17 2 1 19 19 C 1.53005 * 117.50058 * 128.74262 * 17 2 1 20 20 C 1.53002 * 117.49501 * 60.08359 * 17 2 1 21 21 H 1.08997 * 117.50041 * 0.02562 * 20 17 2 22 22 C 1.50702 * 117.49962 * 214.97786 * 20 17 2 23 23 C 1.33388 * 125.20045 * 120.00143 * 22 20 17 24 24 C 1.38418 * 114.92201 * 179.97438 * 23 22 20 25 25 C 1.33398 * 114.91932 * 359.97438 * 24 23 22 26 26 S 1.75880 * 125.20362 * 299.70076 * 22 20 17 27 27 H 1.09005 * 109.47085 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47542 * 300.00532 * 1 2 3 29 29 H 1.09005 * 109.47240 * 60.00567 * 1 2 3 30 30 H 1.00905 * 110.99730 * 151.04739 * 4 2 1 31 31 H 1.09005 * 109.47299 * 294.73739 * 5 4 2 32 32 H 1.08994 * 109.47050 * 54.73772 * 5 4 2 33 33 H 0.96994 * 120.00210 * 185.04298 * 10 9 7 34 34 H 1.09004 * 117.50387 * 0.02562 * 15 6 5 35 35 H 1.09006 * 117.50095 * 145.02404 * 15 6 5 36 36 H 1.09005 * 117.49918 * 214.97786 * 16 6 5 37 37 H 1.08993 * 117.50253 * 359.97438 * 16 6 5 38 38 H 1.09001 * 117.49360 * 0.02562 * 19 17 2 39 39 H 1.08998 * 117.49961 * 145.02238 * 19 17 2 40 40 H 1.08005 * 122.54093 * 0.02562 * 23 22 20 41 41 H 1.08003 * 122.54155 * 179.97438 * 24 23 22 42 42 H 1.07998 * 125.20000 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6923 1.1995 5 6 2.0823 0.2228 2.3469 6 6 2.4691 -0.5602 3.6032 7 6 3.8512 -1.1608 3.5949 8 1 3.9929 -2.1855 3.2842 9 6 4.9349 -0.4023 3.9839 10 7 4.7843 0.8801 4.2336 11 14 6.6170 -1.1960 4.1563 12 1 6.5199 -2.6394 3.8209 13 1 7.5730 -0.5357 3.2315 14 1 7.0952 -1.0442 5.5539 15 6 1.3639 -1.3408 4.3173 16 6 1.9239 -0.0608 4.9427 17 6 2.0401 -0.7213 -1.2491 18 1 2.1254 -1.8046 -1.1645 19 6 3.0764 0.0039 -2.1100 20 6 1.6374 -0.1484 -2.6095 21 1 1.0095 0.7425 -2.6146 22 6 1.3899 -1.1252 -3.7302 23 6 0.2389 -1.2624 -4.3903 24 6 0.2475 -2.2265 -5.3834 25 6 1.4057 -2.8720 -5.5302 26 16 2.5765 -2.2533 -4.3726 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 2.9173 -1.1204 1.0288 31 1 2.8280 0.9946 2.1559 32 1 1.1077 0.6878 2.4944 33 1 5.5579 1.4290 4.4359 34 1 0.3612 -1.2969 3.8920 35 1 1.6365 -2.2887 4.7815 36 1 2.5647 -0.1670 5.8180 37 1 1.2900 0.8258 4.9290 38 1 3.3950 0.9948 -1.7862 39 1 3.8433 -0.6023 -2.5921 40 1 -0.6333 -0.6657 -4.1674 41 1 -0.6179 -2.4401 -5.9933 42 1 1.5963 -3.6524 -6.2520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417331852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:06 Heat of formation + Delta-G solvation = 75.207498 kcal Electronic energy + Delta-G solvation = -20526.602288 eV Core-core repulsion = 17599.460440 eV Total energy + Delta-G solvation = -2927.141848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.92932 -37.48501 -36.57007 -34.11181 -31.88453 -29.81912 -29.07810 -25.69418 -25.01600 -24.24345 -22.34104 -21.69199 -20.92793 -19.85501 -19.34776 -18.90755 -17.23729 -16.00631 -15.84253 -15.19599 -14.68439 -14.55737 -13.84545 -13.69466 -13.44066 -13.19996 -13.12001 -12.74606 -12.55995 -12.14655 -12.05955 -11.84770 -11.56821 -11.45230 -11.19487 -10.97208 -10.85404 -10.83163 -10.56005 -10.39941 -10.33829 -10.09874 -9.97603 -9.36805 -8.71126 -8.57941 -8.53725 -8.39300 -8.02070 -7.45877 -6.00501 -4.06217 0.88095 1.51836 1.91629 2.61346 3.27908 3.37229 3.41421 3.88275 4.35809 4.41851 4.76886 4.79516 4.93760 5.13260 5.21470 5.28849 5.35800 5.47004 5.47814 5.61645 5.64456 5.83187 5.86881 5.95493 6.03782 6.08004 6.21626 6.23011 6.30762 6.35969 6.37557 6.52474 6.61136 6.62532 6.90095 6.90637 6.97582 7.20928 7.56629 7.60355 7.90660 8.05434 8.33914 8.53514 8.97469 9.59405 11.07421 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019433 B = 0.003611 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.499319 B = 7751.693865 C = 8606.735249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.113 3.887 3 H 0.037 0.963 4 N -0.673 5.673 5 C 0.107 3.893 6 C 0.052 3.948 7 C -0.491 4.491 8 H 0.060 0.940 9 C 0.070 3.930 10 N -0.880 5.880 11 Si 0.886 3.114 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.285 1.285 15 C -0.200 4.200 16 C -0.163 4.163 17 C -0.123 4.123 18 H 0.113 0.887 19 C -0.172 4.172 20 C -0.089 4.089 21 H 0.122 0.878 22 C -0.127 4.127 23 C -0.148 4.148 24 C -0.130 4.130 25 C -0.227 4.227 26 S 0.100 5.900 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.348 0.652 31 H 0.034 0.966 32 H 0.037 0.963 33 H 0.258 0.742 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.168 -2.301 -17.488 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.002 3.998 3 H 0.055 0.945 4 N -0.305 5.305 5 C -0.021 4.021 6 C 0.051 3.949 7 C -0.529 4.529 8 H 0.078 0.922 9 C -0.133 4.133 10 N -0.517 5.517 11 Si 0.714 3.286 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.237 4.237 16 C -0.201 4.201 17 C -0.142 4.142 18 H 0.132 0.868 19 C -0.209 4.209 20 C -0.109 4.109 21 H 0.139 0.861 22 C -0.245 4.245 23 C -0.178 4.178 24 C -0.161 4.161 25 C -0.362 4.362 26 S 0.364 5.636 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.168 0.832 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.180 -2.742 -16.890 18.193 hybrid contribution 0.255 0.529 -0.477 0.757 sum -5.925 -2.213 -17.367 18.483 Atomic orbital electron populations 1.21732 0.95068 1.02010 1.00314 1.21040 0.95357 0.94978 0.88397 0.94479 1.60525 1.34326 1.33011 1.02678 1.21458 0.97034 0.93235 0.90411 1.18724 0.91929 0.96273 0.87975 1.20512 0.89835 0.98121 1.44474 0.92158 1.24996 0.98688 0.94880 0.94704 1.70002 1.29673 1.04807 1.47255 0.86640 0.84459 0.79822 0.77722 1.19658 1.21198 1.21070 1.22864 0.97950 0.95351 1.07576 1.22531 1.02885 0.94833 0.99886 1.22735 1.01181 1.00262 0.90066 0.86848 1.23264 0.91123 1.02910 1.03647 1.20566 0.99647 0.98706 0.92016 0.86050 1.23849 0.96903 1.01946 1.01782 1.20030 0.98359 1.01411 0.97992 1.20134 0.98454 0.97544 0.99952 1.25604 0.97591 1.07202 1.05847 1.84341 1.15426 1.33150 1.30672 0.92193 0.92874 0.93527 0.83218 0.94769 0.94495 0.93226 0.91718 0.90972 0.90390 0.92263 0.87849 0.88733 0.84378 0.84529 0.82151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.25 37.15 0.34 -1.55 16 2 C 0.11 1.76 2.84 -67.72 -0.19 1.57 16 3 H 0.04 0.61 7.62 -51.93 -0.40 0.21 16 4 N -0.67 -12.93 6.28 -106.73 -0.67 -13.60 16 5 C 0.11 2.37 5.32 -3.83 -0.02 2.35 16 6 C 0.05 1.26 1.56 -155.66 -0.24 1.02 16 7 C -0.49 -13.09 8.33 -34.44 -0.29 -13.38 16 8 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 9 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 10 N -0.88 -24.61 12.94 55.43 0.72 -23.89 16 11 Si 0.89 20.88 29.55 -169.99 -5.02 15.86 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 C -0.20 -4.50 9.96 -26.70 -0.27 -4.77 16 16 C -0.16 -3.90 9.44 -26.69 -0.25 -4.15 16 17 C -0.12 -1.69 4.81 -90.62 -0.44 -2.12 16 18 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 19 C -0.17 -2.15 9.69 -26.69 -0.26 -2.41 16 20 C -0.09 -1.05 5.42 -91.73 -0.50 -1.55 16 21 H 0.12 1.32 7.61 -51.93 -0.40 0.93 16 22 C -0.13 -1.49 6.14 -36.00 -0.22 -1.71 16 23 C -0.15 -1.58 10.05 -41.21 -0.41 -2.00 16 24 C -0.13 -1.26 10.18 -41.21 -0.42 -1.68 16 25 C -0.23 -2.20 11.23 29.04 0.33 -1.87 16 26 S 0.10 1.10 22.16 -107.50 -2.38 -1.28 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.80 7.38 -51.93 -0.38 0.41 16 29 H 0.05 0.56 7.29 -51.93 -0.38 0.18 16 30 H 0.35 7.07 7.93 -39.29 -0.31 6.76 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.78 7.28 -51.93 -0.38 0.40 16 33 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 34 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.08 1.99 8.14 -51.93 -0.42 1.56 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.10 1.28 8.05 -51.93 -0.42 0.86 16 39 H 0.09 1.14 7.26 -51.93 -0.38 0.77 16 40 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 359.58 15.07 5.42 5.42 Total: -1.00 -27.63 359.58 -11.68 -39.32 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.81 Total: 8.62 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -2.93 Total: -30.45 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.05 Total: -37.49 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.38 Total: -1.28 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.63 -11.68 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417331852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.525 kcal (2) G-P(sol) polarization free energy of solvation -27.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds