Wall clock time and date at job start Tue Mar 31 2020 06:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47085 * 2 1 4 4 N 1.46899 * 109.47021 * 119.99212 * 2 1 3 5 5 C 1.46897 * 111.00528 * 275.00442 * 4 2 1 6 6 C 1.52999 * 109.47092 * 174.73764 * 5 4 2 7 7 C 1.50698 * 115.55061 * 65.17061 * 6 5 4 8 8 H 1.08001 * 119.99897 * 265.08854 * 7 6 5 9 9 C 1.37877 * 120.00172 * 85.09664 * 7 6 5 10 10 N 1.31517 * 119.99914 * 353.19949 * 9 7 6 11 11 Si 1.86795 * 120.00359 * 173.20649 * 9 7 6 12 12 H 1.48502 * 109.46824 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47135 * 119.99493 * 11 9 7 14 14 H 1.48493 * 109.47376 * 239.99714 * 11 9 7 15 15 C 1.52997 * 117.49714 * 279.49633 * 6 5 4 16 16 C 1.53002 * 117.49500 * 210.83956 * 6 5 4 17 17 C 1.52998 * 109.47706 * 239.99640 * 2 1 3 18 18 H 1.08996 * 115.54984 * 274.41835 * 17 2 1 19 19 C 1.53005 * 117.50058 * 128.74262 * 17 2 1 20 20 C 1.53002 * 117.49501 * 60.08359 * 17 2 1 21 21 H 1.08997 * 117.50041 * 0.02562 * 20 17 2 22 22 C 1.50702 * 117.49962 * 214.97786 * 20 17 2 23 23 C 1.33388 * 125.20045 * 120.00143 * 22 20 17 24 24 C 1.38418 * 114.92201 * 179.97438 * 23 22 20 25 25 C 1.33398 * 114.91932 * 359.97438 * 24 23 22 26 26 S 1.75880 * 125.20362 * 299.70076 * 22 20 17 27 27 H 1.09005 * 109.47085 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47542 * 300.00532 * 1 2 3 29 29 H 1.09005 * 109.47240 * 60.00567 * 1 2 3 30 30 H 1.00905 * 110.99730 * 151.04739 * 4 2 1 31 31 H 1.09005 * 109.47299 * 294.73739 * 5 4 2 32 32 H 1.08994 * 109.47050 * 54.73772 * 5 4 2 33 33 H 0.96994 * 120.00210 * 185.04298 * 10 9 7 34 34 H 1.09004 * 117.50387 * 0.02562 * 15 6 5 35 35 H 1.09006 * 117.50095 * 145.02404 * 15 6 5 36 36 H 1.09005 * 117.49918 * 214.97786 * 16 6 5 37 37 H 1.08993 * 117.50253 * 359.97438 * 16 6 5 38 38 H 1.09001 * 117.49360 * 0.02562 * 19 17 2 39 39 H 1.08998 * 117.49961 * 145.02238 * 19 17 2 40 40 H 1.08005 * 122.54093 * 0.02562 * 23 22 20 41 41 H 1.08003 * 122.54155 * 179.97438 * 24 23 22 42 42 H 1.07998 * 125.20000 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6923 1.1995 5 6 2.0823 0.2228 2.3469 6 6 2.4691 -0.5602 3.6032 7 6 3.8512 -1.1608 3.5949 8 1 3.9929 -2.1855 3.2842 9 6 4.9349 -0.4023 3.9839 10 7 4.7843 0.8801 4.2336 11 14 6.6170 -1.1960 4.1563 12 1 6.5199 -2.6394 3.8209 13 1 7.5730 -0.5357 3.2315 14 1 7.0952 -1.0442 5.5539 15 6 1.3639 -1.3408 4.3173 16 6 1.9239 -0.0608 4.9427 17 6 2.0401 -0.7213 -1.2491 18 1 2.1254 -1.8046 -1.1645 19 6 3.0764 0.0039 -2.1100 20 6 1.6374 -0.1484 -2.6095 21 1 1.0095 0.7425 -2.6146 22 6 1.3899 -1.1252 -3.7302 23 6 0.2389 -1.2624 -4.3903 24 6 0.2475 -2.2265 -5.3834 25 6 1.4057 -2.8720 -5.5302 26 16 2.5765 -2.2533 -4.3726 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 2.9173 -1.1204 1.0288 31 1 2.8280 0.9946 2.1559 32 1 1.1077 0.6878 2.4944 33 1 5.5579 1.4290 4.4359 34 1 0.3612 -1.2969 3.8920 35 1 1.6365 -2.2887 4.7815 36 1 2.5647 -0.1670 5.8180 37 1 1.2900 0.8258 4.9290 38 1 3.3950 0.9948 -1.7862 39 1 3.8433 -0.6023 -2.5921 40 1 -0.6333 -0.6657 -4.1674 41 1 -0.6179 -2.4401 -5.9933 42 1 1.5963 -3.6524 -6.2520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417331852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:06 Heat of formation + Delta-G solvation = 62.498924 kcal Electronic energy + Delta-G solvation = -20527.153373 eV Core-core repulsion = 17599.460440 eV Total energy + Delta-G solvation = -2927.692933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.98890 -38.73283 -37.97210 -35.51314 -33.94291 -31.02298 -30.07638 -27.63101 -26.52648 -25.20128 -23.61815 -22.82806 -22.58000 -21.19181 -20.68387 -20.14208 -18.12684 -17.89229 -16.95736 -16.61360 -16.28556 -15.98113 -15.48906 -14.95923 -14.77655 -14.52071 -14.06173 -14.02251 -13.51528 -13.44737 -13.26155 -13.11391 -12.92293 -12.89429 -12.88078 -12.73694 -12.48011 -12.25375 -11.98017 -11.72689 -11.67085 -11.46038 -11.23322 -11.02292 -10.69312 -10.38251 -9.91811 -9.40234 -9.36129 -9.06678 -8.07095 -6.17757 0.08104 0.72033 1.13966 1.39258 1.43687 1.53553 1.84312 2.43880 2.88166 3.20127 3.21073 3.56220 3.75494 3.78195 4.03726 4.18480 4.28892 4.34313 4.39467 4.45637 4.62463 4.65949 4.68056 4.75660 4.79989 4.82092 4.87938 5.03187 5.05376 5.07690 5.08294 5.14564 5.24444 5.28418 5.30976 5.43408 5.47229 5.62417 5.68380 5.72122 5.82785 6.43574 6.51718 6.70061 6.91659 7.50204 9.00371 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019433 B = 0.003611 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.499319 B = 7751.693865 C = 8606.735249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.114 3.886 3 H 0.030 0.970 4 N -0.673 5.673 5 C 0.124 3.876 6 C 0.028 3.972 7 C -0.501 4.501 8 H 0.051 0.949 9 C 0.027 3.973 10 N -0.908 5.908 11 Si 0.944 3.056 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.285 1.285 15 C -0.178 4.178 16 C -0.169 4.169 17 C -0.133 4.133 18 H 0.102 0.898 19 C -0.175 4.175 20 C -0.066 4.066 21 H 0.134 0.866 22 C -0.152 4.152 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.221 4.221 26 S 0.071 5.929 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.339 0.661 31 H 0.002 0.998 32 H 0.045 0.955 33 H 0.258 0.742 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.154 0.846 41 H 0.163 0.837 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.303 -2.909 -19.236 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.004 3.996 3 H 0.048 0.952 4 N -0.303 5.303 5 C -0.005 4.005 6 C 0.028 3.972 7 C -0.539 4.539 8 H 0.069 0.931 9 C -0.173 4.173 10 N -0.546 5.546 11 Si 0.771 3.229 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.211 1.211 15 C -0.216 4.216 16 C -0.207 4.207 17 C -0.152 4.152 18 H 0.120 0.880 19 C -0.212 4.212 20 C -0.086 4.086 21 H 0.152 0.848 22 C -0.269 4.269 23 C -0.174 4.174 24 C -0.168 4.168 25 C -0.356 4.356 26 S 0.335 5.665 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.158 0.842 31 H 0.020 0.980 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.172 0.828 41 H 0.180 0.820 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -7.327 -3.359 -18.646 20.314 hybrid contribution 0.555 0.677 0.004 0.876 sum -6.772 -2.682 -18.643 20.015 Atomic orbital electron populations 1.21684 0.93593 1.02006 1.01172 1.21097 0.96365 0.94372 0.87784 0.95233 1.60534 1.33605 1.32697 1.03512 1.21152 0.96218 0.92459 0.90666 1.18885 0.91855 0.97455 0.89022 1.20712 0.91288 0.97760 1.44143 0.93055 1.25620 1.01818 0.95270 0.94591 1.70102 1.30446 1.05817 1.48212 0.85717 0.80671 0.79096 0.77424 1.19233 1.20783 1.21147 1.22833 0.98242 0.94483 1.05998 1.22454 1.03125 0.96205 0.98930 1.22492 1.02967 0.99400 0.90337 0.88000 1.23287 0.91847 1.02652 1.03457 1.20548 0.98838 0.98657 0.90572 0.84792 1.23884 0.97604 1.02793 1.02637 1.20354 0.98356 1.01251 0.97486 1.20450 0.99312 0.97095 0.99965 1.25943 0.96942 1.07335 1.05415 1.84442 1.16554 1.33760 1.31773 0.92548 0.93798 0.90880 0.84247 0.98002 0.93615 0.93321 0.89677 0.91113 0.92637 0.91155 0.87933 0.88601 0.82839 0.81992 0.79904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.25 71.98 0.67 -2.74 16 2 C 0.11 3.50 2.84 44.91 0.13 3.62 16 3 H 0.03 0.97 7.62 -2.38 -0.02 0.95 16 4 N -0.67 -25.90 6.28 -491.59 -3.09 -28.99 16 5 C 0.12 5.54 5.32 86.30 0.46 6.00 16 6 C 0.03 1.40 1.56 -52.93 -0.08 1.31 16 7 C -0.50 -26.99 8.33 25.60 0.21 -26.77 16 8 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 9 C 0.03 1.47 5.39 84.65 0.46 1.93 16 10 N -0.91 -51.54 12.94 21.45 0.28 -51.26 16 11 Si 0.94 43.29 29.55 68.60 2.03 45.32 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 15 C -0.18 -7.87 9.96 30.62 0.30 -7.56 16 16 C -0.17 -8.10 9.44 30.62 0.29 -7.81 16 17 C -0.13 -3.56 4.81 -10.79 -0.05 -3.61 16 18 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 19 C -0.18 -4.30 9.69 30.62 0.30 -4.01 16 20 C -0.07 -1.46 5.42 -11.51 -0.06 -1.52 16 21 H 0.13 2.60 7.61 -2.39 -0.02 2.58 16 22 C -0.15 -3.30 6.14 24.59 0.15 -3.14 16 23 C -0.14 -2.71 10.05 21.21 0.21 -2.49 16 24 C -0.14 -2.27 10.18 21.22 0.22 -2.05 16 25 C -0.22 -3.75 11.23 66.72 0.75 -3.00 16 26 S 0.07 1.49 22.16 -56.49 -1.25 0.24 16 27 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.04 1.25 7.38 -2.39 -0.02 1.23 16 29 H 0.07 1.56 7.29 -2.38 -0.02 1.54 16 30 H 0.34 14.04 7.93 -89.69 -0.71 13.32 16 31 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 32 H 0.05 1.93 7.28 -2.39 -0.02 1.91 16 33 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 34 H 0.08 3.40 8.14 -2.38 -0.02 3.38 16 35 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 36 H 0.05 2.87 8.14 -2.38 -0.02 2.85 16 37 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.10 2.52 8.05 -2.39 -0.02 2.50 16 39 H 0.10 2.32 7.26 -2.39 -0.02 2.30 16 40 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 41 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -58.71 359.58 2.20 -56.51 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.28 Total: 30.03 kcal Atomic # 6 Polarization: -55.80 SS G_CDS: 3.94 Total: -51.85 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -2.81 Total: -80.25 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -1.25 Total: 0.24 kcal Total: -58.71 2.20 -56.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417331852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.009 kcal (2) G-P(sol) polarization free energy of solvation -58.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds