Wall clock time and date at job start Tue Mar 31 2020 06:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47224 * 2 1 4 4 N 1.46903 * 109.47096 * 239.99927 * 2 1 3 5 5 C 1.46901 * 110.99845 * 84.99567 * 4 2 1 6 6 C 1.53007 * 109.47183 * 175.39325 * 5 4 2 7 7 C 1.50703 * 115.55814 * 321.30860 * 6 5 4 8 8 H 1.08004 * 119.99547 * 99.64631 * 7 6 5 9 9 C 1.37873 * 120.00173 * 279.63634 * 7 6 5 10 10 N 1.31516 * 119.99729 * 8.70251 * 9 7 6 11 11 Si 1.86800 * 120.00076 * 188.69553 * 9 7 6 12 12 H 1.48500 * 109.46603 * 60.00345 * 11 9 7 13 13 H 1.48492 * 109.47046 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47129 * 300.00784 * 11 9 7 15 15 C 1.52998 * 117.49706 * 175.61935 * 6 5 4 16 16 C 1.52991 * 117.49601 * 106.99937 * 6 5 4 17 17 C 1.52999 * 109.47415 * 119.99898 * 2 1 3 18 18 H 1.08999 * 115.54964 * 154.32749 * 17 2 1 19 19 C 1.52996 * 117.49646 * 8.62549 * 17 2 1 20 20 C 1.52993 * 117.49873 * 300.00068 * 17 2 1 21 21 H 1.08999 * 117.49935 * 359.97438 * 20 17 2 22 22 C 1.50704 * 117.49677 * 214.97442 * 20 17 2 23 23 C 1.33391 * 125.19883 * 119.72111 * 22 20 17 24 24 C 1.38425 * 114.91827 * 179.86029 * 23 22 20 25 25 C 1.33383 * 114.92190 * 0.42887 * 24 23 22 26 26 S 1.75882 * 109.59523 * 359.77205 * 25 24 23 27 27 H 1.09002 * 109.47224 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47045 * 299.99778 * 1 2 3 29 29 H 1.09001 * 109.47800 * 60.00057 * 1 2 3 30 30 H 1.00898 * 111.00139 * 321.05053 * 4 2 1 31 31 H 1.09007 * 109.47066 * 55.39780 * 5 4 2 32 32 H 1.09000 * 109.47511 * 295.39610 * 5 4 2 33 33 H 0.97004 * 119.99298 * 179.97438 * 10 9 7 34 34 H 1.09003 * 117.49314 * 145.01830 * 15 6 5 35 35 H 1.08998 * 117.50119 * 0.02562 * 15 6 5 36 36 H 1.08995 * 117.50385 * 0.02562 * 16 6 5 37 37 H 1.09003 * 117.51774 * 214.97131 * 16 6 5 38 38 H 1.08999 * 117.50117 * 359.97438 * 19 17 2 39 39 H 1.09004 * 117.49905 * 145.01884 * 19 17 2 40 40 H 1.08004 * 122.54213 * 0.02562 * 23 22 20 41 41 H 1.08002 * 122.54085 * 180.20190 * 24 23 22 42 42 H 1.08001 * 125.20607 * 179.78929 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0823 0.2226 -2.3469 6 6 2.7027 -0.5016 -3.5435 7 6 3.8429 -1.4326 -3.2203 8 1 3.6675 -2.4957 -3.1465 9 6 5.1097 -0.9272 -3.0190 10 7 5.2941 0.3725 -2.9389 11 14 6.5642 -2.0884 -2.8601 12 1 6.6923 -2.8940 -4.1010 13 1 7.8056 -1.3011 -2.6502 14 1 6.3508 -2.9935 -1.7023 15 6 2.7622 0.2534 -4.8729 16 6 1.7707 -0.8974 -4.6904 17 6 2.0400 -0.7212 1.2492 18 1 3.0324 -1.1640 1.1641 19 6 1.0105 -1.4541 2.1116 20 6 1.6358 -0.1495 2.6095 21 1 1.0068 0.7407 2.6145 22 6 2.6399 -0.2422 3.7295 23 6 3.1586 0.7972 4.3851 24 6 4.0624 0.4669 5.3802 25 6 4.2844 -0.8401 5.5266 26 16 3.3129 -1.7370 4.3668 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8900 30 1 1.4495 -1.4979 -1.4101 31 1 2.6935 1.0875 -2.0889 32 1 1.0758 0.5526 -2.6039 33 1 6.1854 0.7280 -2.7969 34 1 3.6260 0.0767 -5.5137 35 1 2.3597 1.2661 -4.8950 36 1 0.7157 -0.6416 -4.5928 37 1 1.9820 -1.8312 -5.2116 38 1 -0.0303 -1.4221 1.7893 39 1 1.3254 -2.3794 2.5941 40 1 2.8915 1.8189 4.1587 41 1 4.5535 1.2113 5.9894 42 1 4.9576 -1.2805 6.2473 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417331854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:11 Heat of formation + Delta-G solvation = 84.231587 kcal Electronic energy + Delta-G solvation = -20738.007256 eV Core-core repulsion = 17811.256722 eV Total energy + Delta-G solvation = -2926.750534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.94858 -37.45343 -36.60146 -34.11136 -31.74613 -29.88040 -28.51148 -25.56667 -24.90598 -24.21366 -23.01443 -21.51637 -21.05424 -19.33347 -19.30096 -18.76451 -17.10171 -16.17172 -15.71043 -14.95921 -14.59386 -14.29489 -14.24957 -13.80820 -13.23887 -13.11230 -12.97340 -12.66622 -12.50353 -12.20532 -11.97431 -11.68897 -11.58179 -11.32003 -11.14016 -10.85291 -10.78676 -10.68770 -10.62463 -10.42533 -10.32858 -10.07198 -9.77560 -9.39491 -8.73372 -8.44100 -8.38492 -8.24706 -7.96889 -7.31991 -5.85005 -3.83999 1.01715 1.65200 2.04436 2.74952 3.42828 3.46732 3.49899 4.03465 4.48223 4.57380 4.91101 4.96986 5.06015 5.25001 5.33661 5.38331 5.45803 5.47871 5.50079 5.58549 5.60577 5.73464 5.84001 6.06093 6.09411 6.15595 6.18308 6.23083 6.34517 6.38808 6.44227 6.50483 6.57795 6.61925 6.69467 6.77433 7.03016 7.13954 7.49179 7.54311 8.06948 8.14843 8.37270 8.64614 9.10710 9.78014 11.25966 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.004488 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.289994 B = 6237.532547 C = 7425.473821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.113 3.887 3 H 0.077 0.923 4 N -0.647 5.647 5 C 0.112 3.888 6 C 0.053 3.947 7 C -0.465 4.465 8 H 0.055 0.945 9 C 0.077 3.923 10 N -0.882 5.882 11 Si 0.883 3.117 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.277 1.277 15 C -0.166 4.166 16 C -0.218 4.218 17 C -0.102 4.102 18 H 0.117 0.883 19 C -0.179 4.179 20 C -0.097 4.097 21 H 0.119 0.881 22 C -0.125 4.125 23 C -0.151 4.151 24 C -0.129 4.129 25 C -0.229 4.229 26 S 0.099 5.901 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.332 0.668 31 H 0.071 0.929 32 H -0.009 1.009 33 H 0.255 0.745 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 -0.037 14.152 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.002 3.998 3 H 0.095 0.905 4 N -0.275 5.275 5 C -0.017 4.017 6 C 0.052 3.948 7 C -0.503 4.503 8 H 0.073 0.927 9 C -0.126 4.126 10 N -0.519 5.519 11 Si 0.711 3.289 12 H -0.207 1.207 13 H -0.217 1.217 14 H -0.203 1.203 15 C -0.204 4.204 16 C -0.255 4.255 17 C -0.121 4.121 18 H 0.135 0.865 19 C -0.217 4.217 20 C -0.117 4.117 21 H 0.136 0.864 22 C -0.242 4.242 23 C -0.180 4.180 24 C -0.160 4.160 25 C -0.364 4.364 26 S 0.363 5.637 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.150 0.850 31 H 0.090 0.910 32 H 0.009 0.991 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.108 0.892 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.983 -1.343 14.027 15.726 hybrid contribution 0.221 1.137 0.287 1.193 sum -6.762 -0.206 14.314 15.832 Atomic orbital electron populations 1.22682 0.98546 1.01710 1.01413 1.21005 0.90896 0.97591 0.90294 0.90453 1.60180 1.55632 1.08874 1.02820 1.21477 0.94536 0.95091 0.90597 1.18894 0.94433 0.96619 0.84848 1.20078 0.90760 0.91904 1.47521 0.92680 1.24805 0.98332 0.94644 0.94774 1.69990 1.21635 1.11093 1.49181 0.86819 0.82409 0.81223 0.78401 1.20681 1.21681 1.20276 1.22549 0.99680 0.93318 1.04889 1.23050 0.94155 0.99259 1.09042 1.22667 1.00039 1.00553 0.88871 0.86481 1.23321 0.99758 0.94394 1.04205 1.20599 0.99433 0.98934 0.92765 0.86361 1.23858 1.03125 0.95524 1.01699 1.20027 1.00048 0.99800 0.98155 1.20119 1.00191 0.95753 0.99913 1.25574 1.07502 0.97504 1.05822 1.84266 1.39098 1.09601 1.30726 0.92255 0.92857 0.92817 0.85031 0.91040 0.99130 0.93490 0.90294 0.92163 0.92135 0.90632 0.87649 0.89167 0.84424 0.84589 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 7.76 37.15 0.29 -2.12 16 2 C 0.11 1.82 2.98 -67.71 -0.20 1.62 16 3 H 0.08 1.34 7.73 -51.93 -0.40 0.94 16 4 N -0.65 -12.76 5.52 -106.72 -0.59 -13.35 16 5 C 0.11 2.44 5.59 -3.82 -0.02 2.42 16 6 C 0.05 1.27 1.65 -155.66 -0.26 1.01 16 7 C -0.46 -12.48 8.10 -34.44 -0.28 -12.76 16 8 H 0.06 1.50 7.83 -52.48 -0.41 1.09 16 9 C 0.08 2.11 5.41 -17.82 -0.10 2.02 16 10 N -0.88 -25.18 13.20 55.43 0.73 -24.44 16 11 Si 0.88 21.68 29.55 -169.99 -5.02 16.65 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 C -0.17 -3.88 9.80 -26.73 -0.26 -4.15 16 16 C -0.22 -4.70 9.88 -26.74 -0.26 -4.96 16 17 C -0.10 -1.54 5.72 -90.63 -0.52 -2.06 16 18 H 0.12 2.12 8.14 -51.93 -0.42 1.69 16 19 C -0.18 -2.24 9.08 -26.73 -0.24 -2.48 16 20 C -0.10 -1.25 5.58 -91.77 -0.51 -1.76 16 21 H 0.12 1.39 7.61 -51.93 -0.40 0.99 16 22 C -0.12 -1.66 6.14 -36.00 -0.22 -1.88 16 23 C -0.15 -1.89 10.05 -41.21 -0.41 -2.30 16 24 C -0.13 -1.48 10.18 -41.21 -0.42 -1.90 16 25 C -0.23 -2.59 11.23 29.04 0.33 -2.27 16 26 S 0.10 1.25 22.16 -107.50 -2.38 -1.13 16 27 H 0.06 0.73 6.96 -51.93 -0.36 0.37 16 28 H 0.05 0.60 7.07 -51.93 -0.37 0.24 16 29 H 0.05 0.73 7.54 -51.93 -0.39 0.34 16 30 H 0.33 6.28 8.52 -39.29 -0.33 5.95 16 31 H 0.07 1.75 7.94 -51.93 -0.41 1.34 16 32 H -0.01 -0.19 7.34 -51.93 -0.38 -0.57 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 37 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.11 1.18 5.85 -51.93 -0.30 0.87 16 39 H 0.09 1.12 7.27 -51.93 -0.38 0.74 16 40 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 41 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 42 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 355.69 15.07 5.36 5.36 Total: -1.00 -28.36 355.69 -11.65 -40.01 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.65 Total: 8.48 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: -3.10 Total: -31.58 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.14 Total: -37.79 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.38 Total: -1.13 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.36 -11.65 -40.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417331854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.243 kcal (2) G-P(sol) polarization free energy of solvation -28.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds