Wall clock time and date at job start Tue Mar 31 2020 06:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47224 * 2 1 4 4 N 1.46903 * 109.47096 * 239.99927 * 2 1 3 5 5 C 1.46901 * 110.99845 * 84.99567 * 4 2 1 6 6 C 1.53007 * 109.47183 * 175.39325 * 5 4 2 7 7 C 1.50703 * 115.55814 * 321.30860 * 6 5 4 8 8 H 1.08004 * 119.99547 * 99.64631 * 7 6 5 9 9 C 1.37873 * 120.00173 * 279.63634 * 7 6 5 10 10 N 1.31516 * 119.99729 * 8.70251 * 9 7 6 11 11 Si 1.86800 * 120.00076 * 188.69553 * 9 7 6 12 12 H 1.48500 * 109.46603 * 60.00345 * 11 9 7 13 13 H 1.48492 * 109.47046 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47129 * 300.00784 * 11 9 7 15 15 C 1.52998 * 117.49706 * 175.61935 * 6 5 4 16 16 C 1.52991 * 117.49601 * 106.99937 * 6 5 4 17 17 C 1.52999 * 109.47415 * 119.99898 * 2 1 3 18 18 H 1.08999 * 115.54964 * 154.32749 * 17 2 1 19 19 C 1.52996 * 117.49646 * 8.62549 * 17 2 1 20 20 C 1.52993 * 117.49873 * 300.00068 * 17 2 1 21 21 H 1.08999 * 117.49935 * 359.97438 * 20 17 2 22 22 C 1.50704 * 117.49677 * 214.97442 * 20 17 2 23 23 C 1.33391 * 125.19883 * 119.72111 * 22 20 17 24 24 C 1.38425 * 114.91827 * 179.86029 * 23 22 20 25 25 C 1.33383 * 114.92190 * 0.42887 * 24 23 22 26 26 S 1.75882 * 109.59523 * 359.77205 * 25 24 23 27 27 H 1.09002 * 109.47224 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47045 * 299.99778 * 1 2 3 29 29 H 1.09001 * 109.47800 * 60.00057 * 1 2 3 30 30 H 1.00898 * 111.00139 * 321.05053 * 4 2 1 31 31 H 1.09007 * 109.47066 * 55.39780 * 5 4 2 32 32 H 1.09000 * 109.47511 * 295.39610 * 5 4 2 33 33 H 0.97004 * 119.99298 * 179.97438 * 10 9 7 34 34 H 1.09003 * 117.49314 * 145.01830 * 15 6 5 35 35 H 1.08998 * 117.50119 * 0.02562 * 15 6 5 36 36 H 1.08995 * 117.50385 * 0.02562 * 16 6 5 37 37 H 1.09003 * 117.51774 * 214.97131 * 16 6 5 38 38 H 1.08999 * 117.50117 * 359.97438 * 19 17 2 39 39 H 1.09004 * 117.49905 * 145.01884 * 19 17 2 40 40 H 1.08004 * 122.54213 * 0.02562 * 23 22 20 41 41 H 1.08002 * 122.54085 * 180.20190 * 24 23 22 42 42 H 1.08001 * 125.20607 * 179.78929 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0823 0.2226 -2.3469 6 6 2.7027 -0.5016 -3.5435 7 6 3.8429 -1.4326 -3.2203 8 1 3.6675 -2.4957 -3.1465 9 6 5.1097 -0.9272 -3.0190 10 7 5.2941 0.3725 -2.9389 11 14 6.5642 -2.0884 -2.8601 12 1 6.6923 -2.8940 -4.1010 13 1 7.8056 -1.3011 -2.6502 14 1 6.3508 -2.9935 -1.7023 15 6 2.7622 0.2534 -4.8729 16 6 1.7707 -0.8974 -4.6904 17 6 2.0400 -0.7212 1.2492 18 1 3.0324 -1.1640 1.1641 19 6 1.0105 -1.4541 2.1116 20 6 1.6358 -0.1495 2.6095 21 1 1.0068 0.7407 2.6145 22 6 2.6399 -0.2422 3.7295 23 6 3.1586 0.7972 4.3851 24 6 4.0624 0.4669 5.3802 25 6 4.2844 -0.8401 5.5266 26 16 3.3129 -1.7370 4.3668 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8900 30 1 1.4495 -1.4979 -1.4101 31 1 2.6935 1.0875 -2.0889 32 1 1.0758 0.5526 -2.6039 33 1 6.1854 0.7280 -2.7969 34 1 3.6260 0.0767 -5.5137 35 1 2.3597 1.2661 -4.8950 36 1 0.7157 -0.6416 -4.5928 37 1 1.9820 -1.8312 -5.2116 38 1 -0.0303 -1.4221 1.7893 39 1 1.3254 -2.3794 2.5941 40 1 2.8915 1.8189 4.1587 41 1 4.5535 1.2113 5.9894 42 1 4.9576 -1.2805 6.2473 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417331854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:10 Heat of formation + Delta-G solvation = 70.716954 kcal Electronic energy + Delta-G solvation = -20738.593294 eV Core-core repulsion = 17811.256722 eV Total energy + Delta-G solvation = -2927.336572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.08200 -38.73924 -38.04673 -35.51300 -33.83963 -31.05535 -29.61928 -27.47294 -26.43920 -25.19243 -24.40852 -22.87429 -22.50621 -21.01063 -20.26604 -20.20463 -18.08825 -17.97319 -16.88415 -16.57103 -16.17968 -15.77833 -15.58299 -15.23643 -14.68396 -14.62825 -14.04566 -13.76922 -13.66521 -13.50173 -13.33005 -13.14500 -12.85107 -12.78742 -12.72633 -12.55430 -12.37893 -12.27781 -12.03017 -11.91535 -11.66685 -11.46510 -11.20338 -10.88593 -10.66448 -10.29911 -9.85140 -9.40591 -9.35330 -8.81971 -7.96298 -5.98681 0.07109 0.71475 1.11770 1.44311 1.45589 1.50943 1.82514 2.52214 2.95928 3.29121 3.37253 3.56438 3.75832 3.93027 4.11901 4.20204 4.24479 4.33274 4.43670 4.47141 4.55450 4.57115 4.66196 4.72790 4.77001 4.80937 4.87361 5.00664 5.03712 5.07636 5.14978 5.19263 5.23149 5.29881 5.33863 5.41948 5.42853 5.60136 5.65254 5.73554 5.93481 6.46969 6.67206 6.91877 7.03119 7.64953 9.13433 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.004488 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.289994 B = 6237.532547 C = 7425.473821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.117 3.883 3 H 0.056 0.944 4 N -0.666 5.666 5 C 0.129 3.871 6 C 0.024 3.976 7 C -0.466 4.466 8 H 0.046 0.954 9 C 0.032 3.968 10 N -0.909 5.909 11 Si 0.933 3.067 12 H -0.275 1.275 13 H -0.292 1.292 14 H -0.278 1.278 15 C -0.175 4.175 16 C -0.189 4.189 17 C -0.123 4.123 18 H 0.079 0.921 19 C -0.160 4.160 20 C -0.084 4.084 21 H 0.134 0.866 22 C -0.151 4.151 23 C -0.154 4.154 24 C -0.139 4.139 25 C -0.225 4.225 26 S 0.076 5.924 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.336 0.664 31 H 0.036 0.964 32 H 0.011 0.989 33 H 0.251 0.749 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.150 0.850 41 H 0.161 0.839 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.094 -0.304 15.360 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.007 3.993 3 H 0.075 0.925 4 N -0.296 5.296 5 C 0.000 4.000 6 C 0.023 3.977 7 C -0.505 4.505 8 H 0.064 0.936 9 C -0.167 4.167 10 N -0.548 5.548 11 Si 0.761 3.239 12 H -0.200 1.200 13 H -0.218 1.218 14 H -0.203 1.203 15 C -0.213 4.213 16 C -0.226 4.226 17 C -0.143 4.143 18 H 0.097 0.903 19 C -0.197 4.197 20 C -0.104 4.104 21 H 0.152 0.848 22 C -0.268 4.268 23 C -0.184 4.184 24 C -0.169 4.169 25 C -0.360 4.360 26 S 0.339 5.661 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.155 0.845 31 H 0.054 0.946 32 H 0.028 0.972 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.144 0.856 39 H 0.108 0.892 40 H 0.168 0.832 41 H 0.179 0.821 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.441 -1.627 15.235 17.493 hybrid contribution 0.700 1.211 -0.047 1.400 sum -7.741 -0.416 15.188 17.052 Atomic orbital electron populations 1.22543 0.95541 1.02731 1.02350 1.20949 0.93175 0.96109 0.89069 0.92526 1.60053 1.57101 1.09195 1.03216 1.21128 0.94516 0.93922 0.90468 1.19044 0.95198 0.97330 0.86130 1.20309 0.91860 0.91929 1.46369 0.93611 1.25389 1.00479 0.95714 0.95136 1.70102 1.21593 1.12312 1.50762 0.86017 0.79926 0.79641 0.78351 1.20043 1.21827 1.20312 1.22479 0.99940 0.94649 1.04245 1.23037 0.95084 0.98262 1.06210 1.22348 0.99219 1.02820 0.89899 0.90279 1.23379 0.99889 0.94269 1.02157 1.20658 0.99084 0.99760 0.90900 0.84788 1.24022 1.04194 0.95978 1.02573 1.20357 0.99768 1.00274 0.98044 1.20430 1.00066 0.96421 0.99950 1.25931 1.07150 0.97417 1.05483 1.84302 1.39950 1.10218 1.31633 0.91104 0.90544 0.93224 0.84544 0.94552 0.97155 0.93984 0.92558 0.91072 0.89204 0.90592 0.85567 0.89217 0.83247 0.82123 0.79819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 7.76 71.98 0.56 -3.55 16 2 C 0.12 3.74 2.98 44.91 0.13 3.87 16 3 H 0.06 2.01 7.73 -2.39 -0.02 1.99 16 4 N -0.67 -26.39 5.52 -491.55 -2.71 -29.11 16 5 C 0.13 5.65 5.59 86.31 0.48 6.13 16 6 C 0.02 1.14 1.65 -52.93 -0.09 1.05 16 7 C -0.47 -25.32 8.10 25.60 0.21 -25.12 16 8 H 0.05 2.51 7.83 -2.91 -0.02 2.49 16 9 C 0.03 1.79 5.41 84.65 0.46 2.24 16 10 N -0.91 -53.22 13.20 21.45 0.28 -52.94 16 11 Si 0.93 45.19 29.55 68.60 2.03 47.22 16 12 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 13 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 14 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 15 C -0.17 -8.14 9.80 30.59 0.30 -7.85 16 16 C -0.19 -7.82 9.88 30.59 0.30 -7.52 16 17 C -0.12 -3.73 5.72 -10.80 -0.06 -3.79 16 18 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 19 C -0.16 -3.73 9.08 30.59 0.28 -3.46 16 20 C -0.08 -2.06 5.58 -11.54 -0.06 -2.13 16 21 H 0.13 2.84 7.61 -2.39 -0.02 2.82 16 22 C -0.15 -3.89 6.14 24.59 0.15 -3.74 16 23 C -0.15 -3.66 10.05 21.22 0.21 -3.45 16 24 C -0.14 -2.91 10.18 21.22 0.22 -2.69 16 25 C -0.22 -4.72 11.23 66.72 0.75 -3.98 16 26 S 0.08 1.86 22.16 -56.49 -1.25 0.60 16 27 H 0.07 1.53 6.96 -2.39 -0.02 1.52 16 28 H 0.08 1.48 7.07 -2.39 -0.02 1.46 16 29 H 0.05 1.23 7.54 -2.39 -0.02 1.21 16 30 H 0.34 12.54 8.52 -89.70 -0.76 11.77 16 31 H 0.04 1.82 7.94 -2.38 -0.02 1.81 16 32 H 0.01 0.41 7.34 -2.39 -0.02 0.40 16 33 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 34 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.09 3.20 8.07 -2.39 -0.02 3.18 16 37 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.13 2.41 5.85 -2.39 -0.01 2.40 16 39 H 0.09 2.12 7.27 -2.39 -0.02 2.10 16 40 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 41 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 42 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -61.80 355.69 2.42 -59.38 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.24 Total: 28.80 kcal Atomic # 6 Polarization: -57.80 SS G_CDS: 3.84 Total: -53.97 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -2.43 Total: -82.04 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.25 Total: 0.60 kcal Total: -61.80 2.42 -59.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417331854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.102 kcal (2) G-P(sol) polarization free energy of solvation -61.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds