Wall clock time and date at job start Tue Mar 31 2020 06:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81395 * 109.47127 * 2 1 4 4 C 1.76197 * 102.99979 * 180.02562 * 3 2 1 5 5 C 1.38993 * 120.08128 * 0.02562 * 4 3 2 6 6 C 1.38065 * 119.91981 * 179.97438 * 5 4 3 7 7 C 1.38328 * 120.07655 * 359.72815 * 6 5 4 8 8 C 1.38278 * 120.16210 * 0.54403 * 7 6 5 9 9 C 1.50701 * 119.95965 * 179.72803 * 8 7 6 10 10 N 1.46906 * 109.47272 * 269.72894 * 9 8 7 11 11 C 1.46893 * 111.00098 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47250 * 185.37571 * 11 10 9 13 13 C 1.50701 * 115.55139 * 294.80834 * 12 11 10 14 14 H 1.07998 * 119.99931 * 95.20118 * 13 12 11 15 15 C 1.37881 * 119.99675 * 274.92507 * 13 12 11 16 16 N 1.31509 * 120.00118 * 355.41870 * 15 13 12 17 17 Si 1.86797 * 119.99851 * 175.42112 * 15 13 12 18 18 H 1.48500 * 109.47305 * 59.99777 * 17 15 13 19 19 H 1.48502 * 109.46877 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47169 * 299.99984 * 17 15 13 21 21 C 1.53005 * 117.49771 * 80.47079 * 12 11 10 22 22 C 1.52998 * 117.50158 * 149.12935 * 12 11 10 23 23 C 1.38101 * 120.08153 * 359.45768 * 8 7 6 24 24 H 1.08995 * 109.47258 * 300.00194 * 1 2 3 25 25 H 1.08995 * 109.47260 * 60.00790 * 1 2 3 26 26 H 1.09010 * 109.46634 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47466 * 239.99270 * 2 1 3 28 28 H 1.09004 * 109.47037 * 119.99994 * 2 1 3 29 29 H 1.07993 * 120.04222 * 359.95854 * 5 4 3 30 30 H 1.07994 * 119.96062 * 180.02562 * 6 5 4 31 31 H 1.08002 * 119.91864 * 180.29661 * 7 6 5 32 32 H 1.08998 * 109.47382 * 149.72936 * 9 8 7 33 33 H 1.08995 * 109.47248 * 29.72471 * 9 8 7 34 34 H 1.00901 * 110.99671 * 303.95517 * 10 9 8 35 35 H 1.09004 * 109.46845 * 65.38026 * 11 10 9 36 36 H 1.08997 * 109.47456 * 305.38043 * 11 10 9 37 37 H 0.96998 * 120.00611 * 185.00609 * 16 15 13 38 38 H 1.08998 * 117.50096 * 215.00821 * 21 12 11 39 39 H 1.08999 * 117.49296 * 0.02838 * 21 12 11 40 40 H 1.09004 * 117.49634 * 359.97438 * 22 12 11 41 41 H 1.08994 * 117.49846 * 144.97788 * 22 12 11 42 42 H 1.08001 * 120.04446 * 180.25273 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.8854 1.5116 -0.0008 5 6 4.4421 0.2380 -0.0017 6 6 5.8143 0.0863 -0.0029 7 6 6.6349 1.1999 -0.0087 8 6 6.0847 2.4684 -0.0021 9 6 6.9830 3.6784 -0.0023 10 7 7.2760 4.0711 1.3826 11 6 8.1519 5.2497 1.4216 12 6 8.5426 5.5471 2.8707 13 6 7.4113 5.9576 3.7777 14 1 6.9149 5.2191 4.3898 15 6 7.0138 7.2768 3.8304 16 7 7.6788 8.1912 3.1587 17 14 5.5308 7.7652 4.8559 18 1 5.7713 7.4060 6.2765 19 1 5.3139 9.2302 4.7461 20 1 4.3286 7.0478 4.3606 21 6 9.6727 4.7166 3.4823 22 6 9.9119 6.1837 3.1168 23 6 4.7129 2.6279 -0.0009 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8020 -0.6318 -0.0013 30 1 6.2476 -0.9029 -0.0040 31 1 7.7081 1.0782 -0.0144 32 1 6.4847 4.5009 -0.5154 33 1 7.9138 3.4399 -0.5169 34 1 6.4252 4.2351 1.8996 35 1 7.6251 6.1077 1.0039 36 1 9.0501 5.0545 0.8358 37 1 7.4448 9.1279 3.2525 38 1 9.5979 4.4671 4.5407 39 1 10.1380 3.9587 2.8522 40 1 10.5347 6.3902 2.2463 41 1 9.9944 6.8996 3.9344 42 1 4.2838 3.6190 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430007172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:04 Heat of formation + Delta-G solvation = 37.521757 kcal Electronic energy + Delta-G solvation = -20142.746396 eV Core-core repulsion = 17213.970372 eV Total energy + Delta-G solvation = -2928.776024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.18580 -36.88902 -34.58598 -33.22594 -31.87583 -31.02575 -30.88966 -26.49697 -25.27416 -24.15506 -23.06836 -22.45677 -21.14016 -20.81230 -19.04507 -17.20701 -16.45108 -15.90465 -15.45738 -15.17099 -15.15378 -14.60032 -14.47561 -14.14133 -13.88705 -13.70540 -13.08225 -12.80243 -12.67495 -12.48988 -12.33570 -11.80634 -11.77985 -11.49485 -11.38040 -11.08051 -10.89113 -10.85180 -10.75696 -10.43011 -10.24393 -10.05701 -9.68147 -9.32396 -8.83079 -8.78731 -8.36146 -8.00794 -7.51135 -7.43434 -5.98360 -4.05791 1.27417 1.38961 1.41045 2.31729 3.32400 3.37266 3.40579 3.73036 4.42942 4.55639 4.59237 4.77772 4.90049 4.98707 5.07770 5.19809 5.29549 5.35302 5.42159 5.42349 5.49069 5.60083 5.69395 5.71464 5.85352 6.00073 6.09562 6.20419 6.27015 6.43929 6.50967 6.58967 6.74573 6.85274 6.87193 6.95192 6.97009 7.24058 7.53152 7.64035 7.91437 7.97613 8.24603 8.53804 8.97819 9.60071 11.08695 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.003820 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.665013 B = 7327.435433 C = 8662.753170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 S -0.125 6.125 4 C -0.083 4.083 5 C -0.140 4.140 6 C -0.104 4.104 7 C -0.101 4.101 8 C -0.049 4.049 9 C 0.093 3.907 10 N -0.674 5.674 11 C 0.105 3.895 12 C 0.048 3.952 13 C -0.493 4.493 14 H 0.059 0.941 15 C 0.070 3.930 16 N -0.881 5.881 17 Si 0.886 3.114 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.201 4.201 22 C -0.156 4.156 23 C -0.093 4.093 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.349 0.651 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.259 0.741 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.796 -15.746 -9.116 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.259 4.259 3 S 0.118 5.882 4 C -0.196 4.196 5 C -0.164 4.164 6 C -0.124 4.124 7 C -0.122 4.122 8 C -0.051 4.051 9 C -0.036 4.036 10 N -0.306 5.306 11 C -0.023 4.023 12 C 0.047 3.953 13 C -0.531 4.531 14 H 0.077 0.923 15 C -0.133 4.133 16 N -0.518 5.518 17 Si 0.714 3.286 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.238 4.238 22 C -0.194 4.194 23 C -0.117 4.117 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.168 0.832 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.101 -15.006 -9.144 19.789 hybrid contribution -0.520 -0.034 0.366 0.637 sum -9.621 -15.040 -8.778 19.895 Atomic orbital electron populations 1.21515 0.91906 1.02795 1.03373 1.23571 1.00372 0.96545 1.05450 1.85597 0.98467 1.11250 1.92931 1.21591 0.96235 0.96380 1.05368 1.21042 0.95863 0.95160 1.04331 1.21000 0.92911 0.98751 0.99714 1.21082 1.00068 0.91645 0.99430 1.19866 0.92920 0.95393 0.96960 1.20917 0.97108 0.92912 0.92710 1.60512 1.21574 1.39066 1.09426 1.21482 0.94178 0.89046 0.97625 1.18714 0.88211 0.97033 0.91340 1.20442 1.15642 0.93206 1.23798 0.92284 1.24995 0.96440 0.96706 0.95155 1.69991 1.40206 1.00616 1.40944 0.86756 0.83691 0.77289 0.80866 1.20285 1.21394 1.20135 1.22867 1.07761 0.93476 0.99716 1.22500 1.01768 0.93764 1.01344 1.20697 0.92625 0.97404 1.00947 0.91465 0.91574 0.90872 0.89590 0.89464 0.86393 0.85955 0.85613 0.94957 0.90731 0.83205 0.95051 0.94178 0.93089 0.90977 0.91794 0.92368 0.90002 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.92 37.16 0.37 -0.56 16 2 C -0.11 -0.93 5.05 37.16 0.19 -0.75 16 3 S -0.12 -1.51 21.92 -107.50 -2.36 -3.87 16 4 C -0.08 -1.13 6.11 -39.03 -0.24 -1.37 16 5 C -0.14 -1.69 9.36 -39.36 -0.37 -2.06 16 6 C -0.10 -1.24 10.04 -39.61 -0.40 -1.63 16 7 C -0.10 -1.36 9.70 -39.53 -0.38 -1.74 16 8 C -0.05 -0.73 5.39 -104.66 -0.56 -1.30 16 9 C 0.09 1.50 5.80 -4.97 -0.03 1.47 16 10 N -0.67 -13.27 6.46 -115.06 -0.74 -14.01 16 11 C 0.11 2.34 5.54 -3.83 -0.02 2.32 16 12 C 0.05 1.18 1.65 -155.66 -0.26 0.92 16 13 C -0.49 -13.33 8.33 -34.44 -0.29 -13.62 16 14 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 15 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 16 N -0.88 -24.88 12.65 55.43 0.70 -24.18 16 17 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.20 -4.56 9.96 -26.69 -0.27 -4.82 16 22 C -0.16 -3.75 9.14 -26.69 -0.24 -3.99 16 23 C -0.09 -1.39 9.45 -39.36 -0.37 -1.76 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 27 H 0.09 0.65 7.75 -51.92 -0.40 0.25 16 28 H 0.09 0.70 7.75 -51.92 -0.40 0.30 16 29 H 0.12 1.14 5.88 -52.49 -0.31 0.83 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.07 1.12 8.08 -51.93 -0.42 0.71 16 34 H 0.35 7.35 8.30 -39.29 -0.33 7.03 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 37 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 38 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 42 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -28.57 362.13 -11.83 -40.40 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.89 Total: 7.14 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -2.97 Total: -27.08 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: -0.04 Total: -38.19 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.36 Total: -3.87 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.57 -11.83 -40.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430007172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.921 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds