Wall clock time and date at job start Tue Mar 31 2020 06:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81395 * 109.47127 * 2 1 4 4 C 1.76197 * 102.99979 * 180.02562 * 3 2 1 5 5 C 1.38993 * 120.08128 * 0.02562 * 4 3 2 6 6 C 1.38065 * 119.91981 * 179.97438 * 5 4 3 7 7 C 1.38328 * 120.07655 * 359.72815 * 6 5 4 8 8 C 1.38278 * 120.16210 * 0.54403 * 7 6 5 9 9 C 1.50701 * 119.95965 * 179.72803 * 8 7 6 10 10 N 1.46906 * 109.47272 * 269.72894 * 9 8 7 11 11 C 1.46893 * 111.00098 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47250 * 185.37571 * 11 10 9 13 13 C 1.50701 * 115.55139 * 294.80834 * 12 11 10 14 14 H 1.07998 * 119.99931 * 95.20118 * 13 12 11 15 15 C 1.37881 * 119.99675 * 274.92507 * 13 12 11 16 16 N 1.31509 * 120.00118 * 355.41870 * 15 13 12 17 17 Si 1.86797 * 119.99851 * 175.42112 * 15 13 12 18 18 H 1.48500 * 109.47305 * 59.99777 * 17 15 13 19 19 H 1.48502 * 109.46877 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47169 * 299.99984 * 17 15 13 21 21 C 1.53005 * 117.49771 * 80.47079 * 12 11 10 22 22 C 1.52998 * 117.50158 * 149.12935 * 12 11 10 23 23 C 1.38101 * 120.08153 * 359.45768 * 8 7 6 24 24 H 1.08995 * 109.47258 * 300.00194 * 1 2 3 25 25 H 1.08995 * 109.47260 * 60.00790 * 1 2 3 26 26 H 1.09010 * 109.46634 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47466 * 239.99270 * 2 1 3 28 28 H 1.09004 * 109.47037 * 119.99994 * 2 1 3 29 29 H 1.07993 * 120.04222 * 359.95854 * 5 4 3 30 30 H 1.07994 * 119.96062 * 180.02562 * 6 5 4 31 31 H 1.08002 * 119.91864 * 180.29661 * 7 6 5 32 32 H 1.08998 * 109.47382 * 149.72936 * 9 8 7 33 33 H 1.08995 * 109.47248 * 29.72471 * 9 8 7 34 34 H 1.00901 * 110.99671 * 303.95517 * 10 9 8 35 35 H 1.09004 * 109.46845 * 65.38026 * 11 10 9 36 36 H 1.08997 * 109.47456 * 305.38043 * 11 10 9 37 37 H 0.96998 * 120.00611 * 185.00609 * 16 15 13 38 38 H 1.08998 * 117.50096 * 215.00821 * 21 12 11 39 39 H 1.08999 * 117.49296 * 0.02838 * 21 12 11 40 40 H 1.09004 * 117.49634 * 359.97438 * 22 12 11 41 41 H 1.08994 * 117.49846 * 144.97788 * 22 12 11 42 42 H 1.08001 * 120.04446 * 180.25273 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.8854 1.5116 -0.0008 5 6 4.4421 0.2380 -0.0017 6 6 5.8143 0.0863 -0.0029 7 6 6.6349 1.1999 -0.0087 8 6 6.0847 2.4684 -0.0021 9 6 6.9830 3.6784 -0.0023 10 7 7.2760 4.0711 1.3826 11 6 8.1519 5.2497 1.4216 12 6 8.5426 5.5471 2.8707 13 6 7.4113 5.9576 3.7777 14 1 6.9149 5.2191 4.3898 15 6 7.0138 7.2768 3.8304 16 7 7.6788 8.1912 3.1587 17 14 5.5308 7.7652 4.8559 18 1 5.7713 7.4060 6.2765 19 1 5.3139 9.2302 4.7461 20 1 4.3286 7.0478 4.3606 21 6 9.6727 4.7166 3.4823 22 6 9.9119 6.1837 3.1168 23 6 4.7129 2.6279 -0.0009 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8020 -0.6318 -0.0013 30 1 6.2476 -0.9029 -0.0040 31 1 7.7081 1.0782 -0.0144 32 1 6.4847 4.5009 -0.5154 33 1 7.9138 3.4399 -0.5169 34 1 6.4252 4.2351 1.8996 35 1 7.6251 6.1077 1.0039 36 1 9.0501 5.0545 0.8358 37 1 7.4448 9.1279 3.2525 38 1 9.5979 4.4671 4.5407 39 1 10.1380 3.9587 2.8522 40 1 10.5347 6.3902 2.2463 41 1 9.9944 6.8996 3.9344 42 1 4.2838 3.6190 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430007172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:00 Heat of formation + Delta-G solvation = 23.724197 kcal Electronic energy + Delta-G solvation = -20143.344703 eV Core-core repulsion = 17213.970372 eV Total energy + Delta-G solvation = -2929.374331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 4.24 seconds Orbital eigenvalues (eV) -40.24372 -38.68743 -36.06531 -33.96800 -33.84982 -32.21357 -31.91488 -28.09842 -27.14170 -25.04966 -24.42963 -23.37559 -22.79155 -22.16674 -20.96742 -18.31742 -17.82636 -17.36204 -16.71006 -16.58508 -16.20934 -15.81552 -15.73341 -15.64580 -15.37609 -14.90711 -14.47744 -14.22057 -13.81124 -13.48479 -13.27845 -13.11215 -13.08211 -12.97956 -12.84128 -12.77693 -12.40114 -12.33675 -12.13927 -11.96750 -11.82537 -11.22961 -11.09768 -10.82182 -10.64650 -10.37146 -10.02297 -9.75806 -9.14628 -8.39466 -8.07924 -6.20139 0.25610 0.37526 0.53859 1.40450 1.41834 1.47945 1.48606 2.42321 2.68085 3.19172 3.40794 3.74538 3.88468 3.93010 3.97124 3.99359 4.10813 4.32189 4.37813 4.40667 4.49886 4.58487 4.63968 4.69427 4.75529 4.83416 4.87278 4.88906 4.99506 5.02517 5.04614 5.10203 5.20379 5.25604 5.32672 5.44987 5.65047 5.68119 5.72667 5.81337 5.96302 6.31229 6.48358 6.55396 6.88750 7.48014 8.98405 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.003820 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.665013 B = 7327.435433 C = 8662.753170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 S -0.168 6.168 4 C -0.091 4.091 5 C -0.138 4.138 6 C -0.098 4.098 7 C -0.109 4.109 8 C -0.064 4.064 9 C 0.097 3.903 10 N -0.671 5.671 11 C 0.119 3.881 12 C 0.023 3.977 13 C -0.504 4.504 14 H 0.049 0.951 15 C 0.027 3.973 16 N -0.907 5.907 17 Si 0.943 3.057 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.178 4.178 22 C -0.160 4.160 23 C -0.114 4.114 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.146 0.854 30 H 0.156 0.844 31 H 0.138 0.862 32 H 0.025 0.975 33 H 0.089 0.911 34 H 0.337 0.663 35 H 0.000 1.000 36 H 0.055 0.945 37 H 0.258 0.742 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.359 -18.558 -9.443 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.247 4.247 3 S 0.074 5.926 4 C -0.203 4.203 5 C -0.161 4.161 6 C -0.118 4.118 7 C -0.130 4.130 8 C -0.067 4.067 9 C -0.032 4.032 10 N -0.301 5.301 11 C -0.010 4.010 12 C 0.023 3.977 13 C -0.542 4.542 14 H 0.067 0.933 15 C -0.174 4.174 16 N -0.545 5.545 17 Si 0.769 3.231 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.216 4.216 22 C -0.199 4.199 23 C -0.138 4.138 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.164 0.836 30 H 0.174 0.826 31 H 0.156 0.844 32 H 0.043 0.957 33 H 0.107 0.893 34 H 0.155 0.845 35 H 0.018 0.982 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.662 -17.831 -9.474 22.384 hybrid contribution -0.391 0.745 0.449 0.953 sum -10.053 -17.086 -9.025 21.782 Atomic orbital electron populations 1.21551 0.90680 1.04220 1.03007 1.23699 1.01182 0.93294 1.06487 1.85762 0.98248 1.15712 1.92864 1.21734 0.96699 0.96691 1.05210 1.21424 0.96522 0.95287 1.02902 1.21386 0.92704 0.99743 0.97949 1.21290 1.01005 0.91382 0.99304 1.19760 0.92646 0.95532 0.98715 1.20927 0.98140 0.93464 0.90650 1.60508 1.20788 1.37314 1.11531 1.21225 0.94793 0.88925 0.96052 1.18870 0.88003 0.98417 0.92437 1.20670 1.16364 0.93194 1.23984 0.93261 1.25621 0.98637 0.96771 0.96334 1.70092 1.41570 1.00673 1.42178 0.85852 0.80779 0.76905 0.79546 1.19863 1.21144 1.19873 1.22840 1.05901 0.93002 0.99807 1.22405 1.02008 0.94322 1.01125 1.20697 0.93129 0.97476 1.02539 0.92107 0.91751 0.88355 0.88168 0.88631 0.83642 0.82614 0.84443 0.95682 0.89319 0.84500 0.98153 0.92682 0.93257 0.91300 0.89426 0.91050 0.92495 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.92 71.98 0.71 -0.81 16 2 C -0.10 -1.41 5.05 71.98 0.36 -1.05 16 3 S -0.17 -3.98 21.92 -56.49 -1.24 -5.22 16 4 C -0.09 -2.40 6.11 22.62 0.14 -2.27 16 5 C -0.14 -2.95 9.36 22.41 0.21 -2.74 16 6 C -0.10 -2.03 10.04 22.25 0.22 -1.81 16 7 C -0.11 -2.71 9.70 22.30 0.22 -2.49 16 8 C -0.06 -1.90 5.39 -19.89 -0.11 -2.01 16 9 C 0.10 3.14 5.80 85.56 0.50 3.64 16 10 N -0.67 -26.53 6.46 -517.94 -3.34 -29.87 16 11 C 0.12 5.33 5.54 86.31 0.48 5.81 16 12 C 0.02 1.16 1.65 -52.93 -0.09 1.07 16 13 C -0.50 -27.67 8.33 25.60 0.21 -27.45 16 14 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 15 C 0.03 1.47 5.43 84.66 0.46 1.93 16 16 N -0.91 -52.25 12.65 21.45 0.27 -51.98 16 17 Si 0.94 44.08 29.54 68.60 2.03 46.10 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 C -0.18 -7.90 9.96 30.62 0.30 -7.59 16 22 C -0.16 -7.73 9.14 30.62 0.28 -7.45 16 23 C -0.11 -3.47 9.45 22.41 0.21 -3.26 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.10 1.18 7.75 -2.39 -0.02 1.16 16 28 H 0.10 1.24 7.75 -2.39 -0.02 1.22 16 29 H 0.15 2.25 5.88 -2.91 -0.02 2.23 16 30 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 32 H 0.02 0.84 8.08 -2.39 -0.02 0.82 16 33 H 0.09 2.59 8.08 -2.39 -0.02 2.57 16 34 H 0.34 14.60 8.30 -89.69 -0.74 13.86 16 35 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 36 H 0.05 2.26 8.08 -2.39 -0.02 2.24 16 37 H 0.26 14.33 8.32 -92.71 -0.77 13.56 16 38 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 40 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 42 H 0.11 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -61.88 362.13 2.07 -59.81 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.24 Total: 27.65 kcal Atomic # 6 Polarization: -50.61 SS G_CDS: 4.12 Total: -46.49 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -3.07 Total: -81.85 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -3.98 SS G_CDS: -1.24 Total: -5.22 kcal Total: -61.88 2.07 -59.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430007172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.532 kcal (2) G-P(sol) polarization free energy of solvation -61.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.24 seconds