Wall clock time and date at job start Tue Mar 31 2020 08:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00303 * 2 1 4 4 H 1.48500 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47312 * 300.00451 * 3 2 1 6 6 H 1.48505 * 109.46848 * 60.00512 * 3 2 1 7 7 C 1.37884 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99726 * 184.28445 * 7 2 1 9 9 C 1.50698 * 120.00020 * 4.28762 * 7 2 1 10 10 C 1.53001 * 115.55192 * 324.37557 * 9 7 2 11 11 N 1.46894 * 109.47151 * 305.88065 * 10 9 7 12 12 C 1.46895 * 111.00083 * 185.08759 * 11 10 9 13 13 H 1.08996 * 109.47607 * 30.58140 * 12 11 10 14 14 C 1.53002 * 109.46956 * 270.58483 * 12 11 10 15 15 C 1.52998 * 109.47585 * 300.00240 * 14 12 11 16 16 C 1.53007 * 109.46913 * 299.99971 * 15 14 12 17 17 C 1.52999 * 109.47155 * 59.99327 * 16 15 14 18 18 H 1.09003 * 109.47051 * 60.00327 * 17 16 15 19 19 C 1.52999 * 109.46919 * 180.02562 * 17 16 15 20 20 F 1.39899 * 109.47315 * 60.00773 * 19 17 16 21 21 F 1.39906 * 109.46750 * 180.02562 * 19 17 16 22 22 F 1.39901 * 109.47466 * 300.00171 * 19 17 16 23 23 C 1.52994 * 109.47588 * 300.00665 * 17 16 15 24 24 C 1.53005 * 117.49754 * 110.04907 * 9 7 2 25 25 C 1.53003 * 117.49905 * 178.70652 * 9 7 2 26 26 H 0.97000 * 119.99799 * 4.99760 * 1 2 3 27 27 H 1.08996 * 109.46804 * 185.88261 * 10 9 7 28 28 H 1.09002 * 109.46954 * 65.88129 * 10 9 7 29 29 H 1.00905 * 110.99920 * 309.04213 * 11 10 9 30 30 H 1.09005 * 109.47086 * 59.99848 * 14 12 11 31 31 H 1.09003 * 109.47409 * 179.97438 * 14 12 11 32 32 H 1.08993 * 109.47374 * 180.02562 * 15 14 12 33 33 H 1.09003 * 109.46980 * 59.99452 * 15 14 12 34 34 H 1.09003 * 109.46588 * 300.00013 * 16 15 14 35 35 H 1.08993 * 109.47205 * 179.97438 * 16 15 14 36 36 H 1.08998 * 109.47308 * 180.02562 * 23 17 16 37 37 H 1.09003 * 109.46649 * 299.99908 * 23 17 16 38 38 H 1.09004 * 117.49600 * 215.00169 * 24 9 7 39 39 H 1.09001 * 117.49644 * 0.02562 * 24 9 7 40 40 H 1.09007 * 117.49398 * 359.97438 * 25 9 7 41 41 H 1.08998 * 117.50424 * 144.99494 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0822 -1.1955 0.0693 9 6 1.2540 -2.4973 -0.0987 10 6 -0.0970 -2.5365 0.6184 11 7 0.0822 -2.1428 2.0222 12 6 -1.1725 -2.2845 2.7729 13 1 -1.7602 -3.0983 2.3482 14 6 -1.9688 -0.9810 2.6858 15 6 -1.1441 0.1615 3.2819 16 6 -0.8296 -0.1471 4.7472 17 6 -0.0333 -1.4506 4.8343 18 1 0.8977 -1.3455 4.2773 19 6 0.2805 -1.7595 6.2996 20 9 -0.9146 -1.8946 7.0141 21 9 1.0092 -2.9511 6.3792 22 9 1.0346 -0.7150 6.8453 23 6 -0.8580 -2.5930 4.2381 24 6 1.3872 -3.2930 -1.3988 25 6 2.0776 -3.7865 -0.1248 26 1 -0.4850 0.8369 -0.0732 27 1 -0.5029 -3.5471 0.5734 28 1 -0.7864 -1.8460 0.1325 29 1 0.8241 -2.6727 2.4545 30 1 -2.1928 -0.7611 1.6419 31 1 -2.9001 -1.0862 3.2425 32 1 -1.7116 1.0900 3.2203 33 1 -0.2130 0.2666 2.7249 34 1 -1.7607 -0.2522 5.3042 35 1 -0.2417 0.6666 5.1718 36 1 -0.2909 -3.5217 4.3007 37 1 -1.7891 -2.6981 4.7952 38 1 0.5122 -3.8444 -1.7432 39 1 2.0179 -2.8740 -2.1829 40 1 3.1622 -3.6920 -0.0715 41 1 1.6570 -4.6626 0.3688 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430036915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:29 Heat of formation + Delta-G solvation = -142.919481 kcal Electronic energy + Delta-G solvation = -25356.884937 eV Core-core repulsion = 21435.674783 eV Total energy + Delta-G solvation = -3921.210155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.94083 -47.41655 -47.41273 -38.70360 -36.61717 -33.26562 -32.00413 -31.10238 -28.95312 -25.47120 -25.44402 -23.89365 -22.04460 -21.42951 -21.11482 -18.95030 -18.84368 -18.05669 -17.92983 -17.31324 -16.21335 -15.10613 -14.63501 -14.48620 -14.38631 -14.14612 -13.98649 -13.85783 -13.69246 -13.58788 -13.57765 -13.36100 -12.89884 -12.57803 -12.06416 -11.86840 -11.63609 -11.46964 -11.32410 -11.15195 -10.95972 -10.91001 -10.53646 -10.43341 -10.13301 -9.99704 -9.79994 -9.71213 -9.29168 -8.80108 -8.60575 -8.06112 -7.14584 -5.79628 -3.90968 2.97530 3.32730 3.42095 3.46055 4.00759 4.21273 4.28075 4.47450 4.85915 5.01567 5.07484 5.31057 5.39500 5.57096 5.64388 5.65498 5.74839 5.82048 5.89376 6.01125 6.15305 6.18016 6.27985 6.37371 6.40125 6.58518 6.65580 6.67103 6.72112 6.82098 6.95058 6.99016 7.19373 7.30394 7.34792 7.71642 8.10823 8.29496 8.43867 8.68457 9.03435 9.69319 11.13378 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.006031 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.588364 B = 4641.918832 C = 5147.653146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.090 3.910 3 Si 0.883 3.117 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.479 4.479 8 H 0.052 0.948 9 C 0.060 3.940 10 C 0.113 3.887 11 N -0.638 5.638 12 C 0.095 3.905 13 H 0.035 0.965 14 C -0.096 4.096 15 C -0.104 4.104 16 C -0.111 4.111 17 C -0.121 4.121 18 H 0.127 0.873 19 C 0.448 3.552 20 F -0.189 7.189 21 F -0.188 7.188 22 F -0.187 7.187 23 C -0.117 4.117 24 C -0.210 4.210 25 C -0.220 4.220 26 H 0.253 0.747 27 H -0.028 1.028 28 H 0.118 0.882 29 H 0.320 0.680 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 -2.558 9.503 10.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.114 4.114 3 Si 0.711 3.289 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.516 4.516 8 H 0.070 0.930 9 C 0.059 3.941 10 C -0.015 4.015 11 N -0.267 5.267 12 C -0.015 4.015 13 H 0.052 0.948 14 C -0.134 4.134 15 C -0.141 4.141 16 C -0.149 4.149 17 C -0.141 4.141 18 H 0.145 0.855 19 C 0.394 3.606 20 F -0.170 7.170 21 F -0.169 7.169 22 F -0.169 7.169 23 C -0.155 4.155 24 C -0.249 4.249 25 C -0.258 4.258 26 H 0.064 0.936 27 H -0.010 1.010 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.413 -1.750 9.488 10.609 hybrid contribution 0.620 -0.331 0.320 0.772 sum -3.793 -2.082 9.808 10.720 Atomic orbital electron populations 1.69862 1.05406 1.25378 1.48527 1.24719 0.94621 0.98054 0.93965 0.86715 0.80240 0.84577 0.77351 1.20267 1.21489 1.21018 1.20316 0.91967 0.88698 1.50608 0.93013 1.19085 0.92895 0.89378 0.92731 1.21750 0.98088 0.93968 0.87679 1.60274 1.03465 1.60737 1.02245 1.21375 0.93257 0.96457 0.90419 0.94752 1.21393 0.95714 0.94503 1.01781 1.21333 1.03076 0.96911 0.92777 1.21578 0.98963 0.94249 1.00110 1.22447 1.04704 0.99376 0.87549 0.85455 1.21020 0.73841 0.73832 0.91929 1.93128 1.46862 1.95687 1.81354 1.93156 1.78422 1.48246 1.97092 1.93153 1.77130 1.58414 1.88174 1.21812 0.99642 0.96212 0.97851 1.22971 1.01493 1.07523 0.92864 1.22927 0.98389 1.00517 1.03944 0.93642 1.01044 0.86416 0.86257 0.90385 0.94199 0.93298 0.88012 0.92050 0.91672 0.91446 0.91088 0.92065 0.90600 0.90936 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.87 10.12 55.43 0.56 -20.31 16 2 C 0.09 2.25 5.31 -17.82 -0.09 2.16 16 3 Si 0.88 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.48 -12.20 8.74 -34.44 -0.30 -12.50 16 8 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 9 C 0.06 1.38 2.05 -155.66 -0.32 1.06 16 10 C 0.11 2.43 4.50 -3.83 -0.02 2.42 16 11 N -0.64 -12.10 4.32 -106.73 -0.46 -12.56 16 12 C 0.10 1.53 2.84 -67.72 -0.19 1.34 16 13 H 0.03 0.57 7.65 -51.93 -0.40 0.17 16 14 C -0.10 -1.54 5.60 -26.73 -0.15 -1.69 16 15 C -0.10 -1.68 5.77 -26.73 -0.15 -1.84 16 16 C -0.11 -1.58 4.96 -26.73 -0.13 -1.71 16 17 C -0.12 -1.72 2.00 -90.62 -0.18 -1.90 16 18 H 0.13 1.99 7.36 -51.93 -0.38 1.61 16 19 C 0.45 6.24 2.69 37.16 0.10 6.34 16 20 F -0.19 -2.60 16.28 2.25 0.04 -2.57 16 21 F -0.19 -2.70 16.80 2.25 0.04 -2.66 16 22 F -0.19 -2.73 16.80 2.25 0.04 -2.69 16 23 C -0.12 -1.62 4.31 -26.73 -0.12 -1.73 16 24 C -0.21 -4.61 9.96 -26.69 -0.27 -4.88 16 25 C -0.22 -4.65 9.92 -26.69 -0.26 -4.92 16 26 H 0.25 6.07 8.32 -40.82 -0.34 5.73 16 27 H -0.03 -0.59 7.87 -51.93 -0.41 -1.00 16 28 H 0.12 2.81 5.68 -51.93 -0.29 2.51 16 29 H 0.32 6.05 7.88 -39.29 -0.31 5.74 16 30 H 0.08 1.44 7.88 -51.93 -0.41 1.03 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 2.02 7.59 -51.93 -0.39 1.62 16 34 H 0.06 0.80 7.80 -51.93 -0.41 0.40 16 35 H 0.06 0.91 7.80 -51.93 -0.41 0.50 16 36 H 0.07 0.91 7.78 -51.93 -0.40 0.50 16 37 H 0.07 0.91 7.80 -51.93 -0.41 0.50 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 40 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 331.90 15.07 5.00 5.00 Total: -1.00 -23.98 331.90 -8.19 -32.17 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.30 Total: 6.32 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -2.09 Total: -17.85 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.10 Total: -32.87 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 0.11 Total: -7.92 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -23.98 -8.19 -32.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430036915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.748 kcal (2) G-P(sol) polarization free energy of solvation -23.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds