Wall clock time and date at job start Tue Mar 31 2020 08:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00303 * 2 1 4 4 H 1.48500 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47312 * 300.00451 * 3 2 1 6 6 H 1.48505 * 109.46848 * 60.00512 * 3 2 1 7 7 C 1.37884 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99726 * 184.28445 * 7 2 1 9 9 C 1.50698 * 120.00020 * 4.28762 * 7 2 1 10 10 C 1.53001 * 115.55192 * 324.37557 * 9 7 2 11 11 N 1.46894 * 109.47151 * 305.88065 * 10 9 7 12 12 C 1.46895 * 111.00083 * 185.08759 * 11 10 9 13 13 H 1.08996 * 109.47607 * 30.58140 * 12 11 10 14 14 C 1.53002 * 109.46956 * 270.58483 * 12 11 10 15 15 C 1.52998 * 109.47585 * 300.00240 * 14 12 11 16 16 C 1.53007 * 109.46913 * 299.99971 * 15 14 12 17 17 C 1.52999 * 109.47155 * 59.99327 * 16 15 14 18 18 H 1.09003 * 109.47051 * 60.00327 * 17 16 15 19 19 C 1.52999 * 109.46919 * 180.02562 * 17 16 15 20 20 F 1.39899 * 109.47315 * 60.00773 * 19 17 16 21 21 F 1.39906 * 109.46750 * 180.02562 * 19 17 16 22 22 F 1.39901 * 109.47466 * 300.00171 * 19 17 16 23 23 C 1.52994 * 109.47588 * 300.00665 * 17 16 15 24 24 C 1.53005 * 117.49754 * 110.04907 * 9 7 2 25 25 C 1.53003 * 117.49905 * 178.70652 * 9 7 2 26 26 H 0.97000 * 119.99799 * 4.99760 * 1 2 3 27 27 H 1.08996 * 109.46804 * 185.88261 * 10 9 7 28 28 H 1.09002 * 109.46954 * 65.88129 * 10 9 7 29 29 H 1.00905 * 110.99920 * 309.04213 * 11 10 9 30 30 H 1.09005 * 109.47086 * 59.99848 * 14 12 11 31 31 H 1.09003 * 109.47409 * 179.97438 * 14 12 11 32 32 H 1.08993 * 109.47374 * 180.02562 * 15 14 12 33 33 H 1.09003 * 109.46980 * 59.99452 * 15 14 12 34 34 H 1.09003 * 109.46588 * 300.00013 * 16 15 14 35 35 H 1.08993 * 109.47205 * 179.97438 * 16 15 14 36 36 H 1.08998 * 109.47308 * 180.02562 * 23 17 16 37 37 H 1.09003 * 109.46649 * 299.99908 * 23 17 16 38 38 H 1.09004 * 117.49600 * 215.00169 * 24 9 7 39 39 H 1.09001 * 117.49644 * 0.02562 * 24 9 7 40 40 H 1.09007 * 117.49398 * 359.97438 * 25 9 7 41 41 H 1.08998 * 117.50424 * 144.99494 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0822 -1.1955 0.0693 9 6 1.2540 -2.4973 -0.0987 10 6 -0.0970 -2.5365 0.6184 11 7 0.0822 -2.1428 2.0222 12 6 -1.1725 -2.2845 2.7729 13 1 -1.7602 -3.0983 2.3482 14 6 -1.9688 -0.9810 2.6858 15 6 -1.1441 0.1615 3.2819 16 6 -0.8296 -0.1471 4.7472 17 6 -0.0333 -1.4506 4.8343 18 1 0.8977 -1.3455 4.2773 19 6 0.2805 -1.7595 6.2996 20 9 -0.9146 -1.8946 7.0141 21 9 1.0092 -2.9511 6.3792 22 9 1.0346 -0.7150 6.8453 23 6 -0.8580 -2.5930 4.2381 24 6 1.3872 -3.2930 -1.3988 25 6 2.0776 -3.7865 -0.1248 26 1 -0.4850 0.8369 -0.0732 27 1 -0.5029 -3.5471 0.5734 28 1 -0.7864 -1.8460 0.1325 29 1 0.8241 -2.6727 2.4545 30 1 -2.1928 -0.7611 1.6419 31 1 -2.9001 -1.0862 3.2425 32 1 -1.7116 1.0900 3.2203 33 1 -0.2130 0.2666 2.7249 34 1 -1.7607 -0.2522 5.3042 35 1 -0.2417 0.6666 5.1718 36 1 -0.2909 -3.5217 4.3007 37 1 -1.7891 -2.6981 4.7952 38 1 0.5122 -3.8444 -1.7432 39 1 2.0179 -2.8740 -2.1829 40 1 3.1622 -3.6920 -0.0715 41 1 1.6570 -4.6626 0.3688 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430036915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:28 Heat of formation + Delta-G solvation = -152.462674 kcal Electronic energy + Delta-G solvation = -25357.298761 eV Core-core repulsion = 21435.674783 eV Total energy + Delta-G solvation = -3921.623979 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.05894 -48.54463 -48.51999 -40.01563 -38.29638 -34.68342 -33.91053 -32.34643 -30.31180 -27.36010 -26.63022 -25.48955 -23.30664 -22.86989 -22.57481 -20.71851 -20.10269 -19.18871 -19.12007 -18.49518 -17.98741 -16.58236 -16.27477 -15.95859 -15.61407 -15.41622 -15.34584 -15.10084 -14.96418 -14.89838 -14.70196 -14.67600 -14.44179 -13.92789 -13.44334 -13.40758 -13.09002 -12.87894 -12.83406 -12.68772 -12.57982 -12.33457 -12.21582 -12.10338 -11.89082 -11.34580 -11.19076 -11.05348 -10.90588 -10.63002 -10.42035 -9.89945 -8.64531 -7.69240 -5.86559 1.46955 1.53612 1.59245 1.84622 2.57568 2.87539 3.08374 3.15812 3.22504 3.62440 3.81067 3.86788 3.95902 4.18022 4.36554 4.42992 4.48078 4.53814 4.62265 4.65537 4.69485 4.79518 4.88533 4.96149 5.01422 5.02317 5.10997 5.17482 5.21271 5.34289 5.45009 5.49659 5.59611 5.64972 5.83114 5.93790 6.25568 6.57902 6.77384 7.08839 7.11609 7.73779 9.18917 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.006031 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.588364 B = 4641.918832 C = 5147.653146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.065 3.935 3 Si 0.925 3.075 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.499 4.499 8 H 0.032 0.968 9 C 0.036 3.964 10 C 0.128 3.872 11 N -0.644 5.644 12 C 0.096 3.904 13 H 0.036 0.964 14 C -0.091 4.091 15 C -0.098 4.098 16 C -0.105 4.105 17 C -0.117 4.117 18 H 0.110 0.890 19 C 0.455 3.545 20 F -0.184 7.184 21 F -0.189 7.189 22 F -0.191 7.191 23 C -0.109 4.109 24 C -0.212 4.212 25 C -0.202 4.202 26 H 0.252 0.748 27 H -0.023 1.023 28 H 0.093 0.907 29 H 0.320 0.680 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.992 -3.084 10.814 12.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.138 4.138 3 Si 0.754 3.246 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.537 4.537 8 H 0.050 0.950 9 C 0.035 3.965 10 C -0.001 4.001 11 N -0.274 5.274 12 C -0.014 4.014 13 H 0.054 0.946 14 C -0.129 4.129 15 C -0.136 4.136 16 C -0.143 4.143 17 C -0.137 4.137 18 H 0.128 0.872 19 C 0.401 3.599 20 F -0.166 7.166 21 F -0.171 7.171 22 F -0.172 7.172 23 C -0.146 4.146 24 C -0.251 4.251 25 C -0.240 4.240 26 H 0.062 0.938 27 H -0.006 1.006 28 H 0.111 0.889 29 H 0.138 0.862 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.259 -2.279 10.801 12.228 hybrid contribution 0.884 -0.157 -0.104 0.903 sum -4.375 -2.436 10.697 11.812 Atomic orbital electron populations 1.69967 1.05488 1.25447 1.47940 1.25077 0.95282 0.99476 0.94001 0.86066 0.78920 0.82541 0.77082 1.21142 1.21603 1.20868 1.20363 0.91203 0.90305 1.51785 0.95013 1.19196 0.94037 0.89320 0.93949 1.21426 0.96455 0.93441 0.88761 1.60174 1.04891 1.60882 1.01436 1.21404 0.91939 0.96476 0.91588 0.94627 1.21337 0.96757 0.94410 1.00409 1.21196 1.01276 0.97338 0.93780 1.21516 0.99846 0.94275 0.98638 1.22345 1.04049 0.99643 0.87662 0.87159 1.20847 0.73853 0.73631 0.91568 1.93139 1.46529 1.95651 1.81232 1.93157 1.78517 1.48338 1.97082 1.93151 1.77280 1.58617 1.88195 1.21741 1.00561 0.96185 0.96152 1.22970 1.01978 1.07483 0.92643 1.22894 0.98056 1.00047 1.02964 0.93818 1.00572 0.88895 0.86235 0.93229 0.91663 0.92890 0.91748 0.90159 0.91502 0.90805 0.89139 0.90809 0.91536 0.91250 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -41.99 10.12 21.45 0.22 -41.77 16 2 C 0.07 3.29 5.31 84.66 0.45 3.74 16 3 Si 0.93 41.81 29.54 68.60 2.03 43.83 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.50 -25.77 8.74 25.60 0.22 -25.54 16 8 H 0.03 1.72 7.82 -2.91 -0.02 1.70 16 9 C 0.04 1.64 2.05 -52.93 -0.11 1.53 16 10 C 0.13 5.45 4.50 86.30 0.39 5.84 16 11 N -0.64 -24.12 4.32 -491.60 -2.12 -26.24 16 12 C 0.10 2.94 2.84 44.92 0.13 3.07 16 13 H 0.04 1.11 7.65 -2.39 -0.02 1.09 16 14 C -0.09 -2.81 5.60 30.59 0.17 -2.64 16 15 C -0.10 -3.10 5.77 30.60 0.18 -2.92 16 16 C -0.11 -2.76 4.96 30.60 0.15 -2.61 16 17 C -0.12 -3.11 2.00 -10.80 -0.02 -3.13 16 18 H 0.11 3.36 7.36 -2.39 -0.02 3.34 16 19 C 0.45 11.65 2.69 71.98 0.19 11.84 16 20 F -0.18 -4.51 16.28 44.97 0.73 -3.78 16 21 F -0.19 -5.05 16.80 44.97 0.76 -4.29 16 22 F -0.19 -5.21 16.80 44.97 0.76 -4.45 16 23 C -0.11 -2.73 4.31 30.59 0.13 -2.59 16 24 C -0.21 -9.20 9.96 30.62 0.30 -8.89 16 25 C -0.20 -8.32 9.92 30.62 0.30 -8.02 16 26 H 0.25 12.16 8.32 -92.71 -0.77 11.39 16 27 H -0.02 -0.96 7.87 -2.39 -0.02 -0.98 16 28 H 0.09 4.47 5.68 -2.39 -0.01 4.45 16 29 H 0.32 11.89 7.88 -89.69 -0.71 11.18 16 30 H 0.05 1.82 7.88 -2.38 -0.02 1.80 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 2.55 7.59 -2.39 -0.02 2.53 16 34 H 0.08 1.83 7.80 -2.39 -0.02 1.81 16 35 H 0.07 1.74 7.80 -2.39 -0.02 1.72 16 36 H 0.07 1.79 7.78 -2.39 -0.02 1.77 16 37 H 0.09 1.97 7.80 -2.39 -0.02 1.95 16 38 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 39 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.07 2.87 8.14 -2.38 -0.02 2.86 16 41 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -50.28 331.90 5.18 -45.10 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.32 Total: 21.93 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 2.49 Total: -30.32 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: -1.91 Total: -68.02 kcal Atomic # 9 Polarization: -14.77 SS G_CDS: 2.24 Total: -12.52 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -50.28 5.18 -45.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430036915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.366 kcal (2) G-P(sol) polarization free energy of solvation -50.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds