Wall clock time and date at job start Tue Mar 31 2020 08:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48507 * 109.46600 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47329 * 299.99531 * 3 2 1 6 6 H 1.48497 * 109.47332 * 60.00011 * 3 2 1 7 7 C 1.37882 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99828 * 185.86549 * 7 2 1 9 9 C 1.50702 * 119.99839 * 5.59770 * 7 2 1 10 10 C 1.52996 * 115.54567 * 279.65563 * 9 7 2 11 11 N 1.46898 * 109.47275 * 294.91997 * 10 9 7 12 12 C 1.46901 * 111.00199 * 174.68310 * 11 10 9 13 13 H 1.08995 * 109.46642 * 325.00041 * 12 11 10 14 14 C 1.52996 * 109.47209 * 85.00030 * 12 11 10 15 15 C 1.52995 * 109.47296 * 180.02562 * 14 12 11 16 16 C 1.53009 * 109.46936 * 299.99660 * 15 14 12 17 17 C 1.53010 * 109.46708 * 60.00199 * 16 15 14 18 18 H 1.09000 * 109.46794 * 59.99627 * 17 16 15 19 19 C 1.53000 * 109.46697 * 179.97438 * 17 16 15 20 20 F 1.39896 * 109.46970 * 59.99973 * 19 17 16 21 21 F 1.39900 * 109.46721 * 180.02562 * 19 17 16 22 22 F 1.39892 * 109.47117 * 299.99613 * 19 17 16 23 23 C 1.52998 * 109.47042 * 205.00082 * 12 11 10 24 24 C 1.53002 * 117.49708 * 133.94403 * 9 7 2 25 25 C 1.52999 * 60.00228 * 252.51160 * 24 9 7 26 26 H 0.97008 * 119.99674 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47560 * 54.92535 * 10 9 7 28 28 H 1.09009 * 109.46788 * 174.92696 * 10 9 7 29 29 H 1.00905 * 110.99949 * 298.63850 * 11 10 9 30 30 H 1.09000 * 109.47066 * 300.00346 * 14 12 11 31 31 H 1.09003 * 109.47483 * 60.00149 * 14 12 11 32 32 H 1.09002 * 109.47488 * 59.99713 * 15 14 12 33 33 H 1.09004 * 109.47412 * 180.02562 * 15 14 12 34 34 H 1.08996 * 109.46884 * 179.97438 * 16 15 14 35 35 H 1.08994 * 109.47383 * 300.00330 * 16 15 14 36 36 H 1.08995 * 109.47369 * 299.99515 * 23 12 11 37 37 H 1.08997 * 109.47192 * 60.00176 * 23 12 11 38 38 H 1.08994 * 117.49720 * 0.02562 * 24 9 7 39 39 H 1.09007 * 117.49359 * 145.01882 * 24 9 7 40 40 H 1.08995 * 117.49879 * 252.51687 * 25 24 9 41 41 H 1.08998 * 117.49809 * 107.49010 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0802 -1.1965 0.0961 9 6 1.2563 -2.4961 -0.1262 10 6 0.6137 -3.0159 1.1614 11 7 1.6640 -3.3490 2.1329 12 6 1.0824 -3.7323 3.4263 13 1 0.1830 -3.1442 3.6087 14 6 0.7234 -5.2194 3.4033 15 6 0.1171 -5.6186 4.7501 16 6 1.1324 -5.3561 5.8643 17 6 1.4913 -3.8689 5.8872 18 1 0.5918 -3.2809 6.0693 19 6 2.5061 -3.6064 7.0018 20 9 3.6606 -4.3613 6.7686 21 9 2.8338 -2.2465 7.0232 22 9 1.9511 -3.9712 8.2331 23 6 2.0980 -3.4700 4.5400 24 6 1.8018 -3.5313 -1.1120 25 6 0.5202 -2.7629 -1.4408 26 1 -0.4850 0.8401 -0.0004 27 1 -0.0368 -2.2474 1.5787 28 1 0.0272 -3.9077 0.9404 29 1 2.2674 -4.0757 1.7781 30 1 -0.0001 -5.4063 2.6098 31 1 1.6228 -5.8076 3.2208 32 1 -0.7824 -5.0305 4.9323 33 1 -0.1382 -6.6782 4.7339 34 1 0.7003 -5.6401 6.8238 35 1 2.0318 -5.9442 5.6822 36 1 2.9974 -4.0580 4.3576 37 1 2.3537 -2.4105 4.5564 38 1 2.7020 -3.2707 -1.6685 39 1 1.7031 -4.5831 -0.8432 40 1 -0.4215 -3.3091 -1.3883 41 1 0.5772 -1.9967 -2.2139 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430036918.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:41 Heat of formation + Delta-G solvation = -154.376810 kcal Electronic energy + Delta-G solvation = -24334.666444 eV Core-core repulsion = 20412.959463 eV Total energy + Delta-G solvation = -3921.706982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 5.17 seconds Orbital eigenvalues (eV) -50.11565 -47.61100 -47.55988 -38.96776 -36.75660 -33.99310 -31.83300 -31.54457 -29.09780 -25.71407 -25.57439 -24.11331 -22.24483 -21.48219 -20.95050 -20.15628 -18.96903 -18.29563 -18.23332 -17.46712 -16.13212 -15.28174 -14.86849 -14.58001 -14.49314 -14.36059 -14.23671 -14.03953 -13.90442 -13.75107 -13.72502 -13.57361 -13.31379 -12.95348 -12.57720 -12.33029 -11.92243 -11.60938 -11.37799 -11.36097 -11.10692 -10.92857 -10.76043 -10.61227 -10.48278 -10.37455 -10.28426 -10.15351 -9.40436 -8.77977 -8.37950 -8.04766 -7.51983 -5.94095 -3.94916 2.74953 3.34973 3.43287 3.47936 3.75067 3.94762 4.01974 4.49534 4.57736 4.66203 4.84474 5.05098 5.09813 5.16216 5.27705 5.36924 5.38238 5.46136 5.49633 5.61196 5.83705 5.91761 5.93917 6.07000 6.08807 6.16802 6.31196 6.38292 6.44642 6.54440 6.64843 6.73896 6.91586 7.11346 7.46015 7.60522 7.96419 8.00056 8.17536 8.57463 9.03938 9.68292 11.16084 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.004534 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.210043 B = 6173.941400 C = 7234.499258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.467 4.467 8 H 0.059 0.941 9 C 0.053 3.947 10 C 0.110 3.890 11 N -0.663 5.663 12 C 0.095 3.905 13 H 0.077 0.923 14 C -0.153 4.153 15 C -0.110 4.110 16 C -0.116 4.116 17 C -0.131 4.131 18 H 0.113 0.887 19 C 0.453 3.547 20 F -0.184 7.184 21 F -0.182 7.182 22 F -0.189 7.189 23 C -0.105 4.105 24 C -0.214 4.214 25 C -0.164 4.164 26 H 0.256 0.744 27 H 0.079 0.921 28 H -0.006 1.006 29 H 0.331 0.669 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.591 -11.054 12.305 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.505 4.505 8 H 0.077 0.923 9 C 0.053 3.947 10 C -0.019 4.019 11 N -0.291 5.291 12 C -0.016 4.016 13 H 0.095 0.905 14 C -0.193 4.193 15 C -0.148 4.148 16 C -0.154 4.154 17 C -0.151 4.151 18 H 0.131 0.869 19 C 0.399 3.601 20 F -0.165 7.165 21 F -0.163 7.163 22 F -0.171 7.171 23 C -0.144 4.144 24 C -0.252 4.252 25 C -0.202 4.202 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.012 0.988 29 H 0.148 0.852 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.570 -10.237 12.498 16.165 hybrid contribution 0.164 0.108 -0.012 0.197 sum 0.734 -10.128 12.486 16.094 Atomic orbital electron populations 1.70002 1.05809 1.26021 1.50673 1.24919 0.94740 0.98692 0.95041 0.86615 0.80349 0.84162 0.77325 1.19791 1.21308 1.21216 1.20344 0.92705 0.88359 1.49104 0.92275 1.18848 0.96726 0.93384 0.85780 1.21548 0.91504 0.96039 0.92798 1.60281 1.21238 1.45249 1.02317 1.21437 0.96439 0.92819 0.90933 0.90488 1.22395 1.01151 0.98532 0.97176 1.21415 0.97902 1.01356 0.94118 1.21605 1.00826 0.92841 1.00118 1.22538 0.97731 1.00857 0.93974 0.86900 1.20699 0.82077 0.74003 0.83291 1.93157 1.52621 1.76325 1.94405 1.93195 1.93438 1.33025 1.96656 1.93150 1.85254 1.91589 1.47057 1.21591 0.99048 1.03466 0.90255 1.22945 0.97911 0.95461 1.08858 1.22556 0.92688 1.01704 1.03275 0.93408 0.90263 0.98836 0.85163 0.91703 0.91783 0.91569 0.91561 0.91002 0.90692 0.90843 0.89617 0.90560 0.92195 0.92179 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.94 13.10 55.43 0.73 -24.21 16 2 C 0.07 1.85 5.42 -17.82 -0.10 1.75 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 7 C -0.47 -12.55 8.72 -34.44 -0.30 -12.85 16 8 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 9 C 0.05 1.27 1.47 -155.66 -0.23 1.04 16 10 C 0.11 2.33 5.34 -3.83 -0.02 2.31 16 11 N -0.66 -12.12 6.12 -106.73 -0.65 -12.77 16 12 C 0.09 1.38 2.47 -67.72 -0.17 1.21 16 13 H 0.08 1.20 7.71 -51.93 -0.40 0.80 16 14 C -0.15 -1.83 5.17 -26.74 -0.14 -1.96 16 15 C -0.11 -1.06 5.92 -26.73 -0.16 -1.22 16 16 C -0.12 -1.10 4.96 -26.72 -0.13 -1.23 16 17 C -0.13 -1.43 2.16 -90.59 -0.20 -1.63 16 18 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 19 C 0.45 5.38 2.69 37.16 0.10 5.48 16 20 F -0.18 -2.29 16.28 2.25 0.04 -2.25 16 21 F -0.18 -2.45 16.80 2.25 0.04 -2.41 16 22 F -0.19 -2.21 16.80 2.25 0.04 -2.17 16 23 C -0.11 -1.40 4.57 -26.71 -0.12 -1.52 16 24 C -0.21 -4.54 9.96 -26.73 -0.27 -4.81 16 25 C -0.16 -3.78 9.68 -26.73 -0.26 -4.04 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.08 1.92 7.91 -51.93 -0.41 1.51 16 28 H -0.01 -0.13 7.52 -51.92 -0.39 -0.52 16 29 H 0.33 5.70 8.53 -39.29 -0.34 5.37 16 30 H 0.06 0.83 7.56 -51.93 -0.39 0.44 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.61 7.80 -51.93 -0.41 0.20 16 35 H 0.07 0.71 7.80 -51.93 -0.41 0.31 16 36 H 0.07 0.96 7.81 -51.93 -0.41 0.56 16 37 H 0.09 1.30 7.80 -51.93 -0.41 0.89 16 38 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 LS Contribution 340.19 15.07 5.13 5.13 Total: -1.00 -27.65 340.19 -8.17 -35.82 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.48 Total: 3.94 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -1.99 Total: -17.46 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.07 Total: -36.98 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.11 Total: -6.83 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.65 -8.17 -35.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430036918.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.553 kcal (2) G-P(sol) polarization free energy of solvation -27.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.18 seconds