Wall clock time and date at job start Tue Mar 31 2020 08:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48507 * 109.46600 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47329 * 299.99531 * 3 2 1 6 6 H 1.48497 * 109.47332 * 60.00011 * 3 2 1 7 7 C 1.37882 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99828 * 185.86549 * 7 2 1 9 9 C 1.50702 * 119.99839 * 5.59770 * 7 2 1 10 10 C 1.52996 * 115.54567 * 279.65563 * 9 7 2 11 11 N 1.46898 * 109.47275 * 294.91997 * 10 9 7 12 12 C 1.46901 * 111.00199 * 174.68310 * 11 10 9 13 13 H 1.08995 * 109.46642 * 325.00041 * 12 11 10 14 14 C 1.52996 * 109.47209 * 85.00030 * 12 11 10 15 15 C 1.52995 * 109.47296 * 180.02562 * 14 12 11 16 16 C 1.53009 * 109.46936 * 299.99660 * 15 14 12 17 17 C 1.53010 * 109.46708 * 60.00199 * 16 15 14 18 18 H 1.09000 * 109.46794 * 59.99627 * 17 16 15 19 19 C 1.53000 * 109.46697 * 179.97438 * 17 16 15 20 20 F 1.39896 * 109.46970 * 59.99973 * 19 17 16 21 21 F 1.39900 * 109.46721 * 180.02562 * 19 17 16 22 22 F 1.39892 * 109.47117 * 299.99613 * 19 17 16 23 23 C 1.52998 * 109.47042 * 205.00082 * 12 11 10 24 24 C 1.53002 * 117.49708 * 133.94403 * 9 7 2 25 25 C 1.52999 * 60.00228 * 252.51160 * 24 9 7 26 26 H 0.97008 * 119.99674 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47560 * 54.92535 * 10 9 7 28 28 H 1.09009 * 109.46788 * 174.92696 * 10 9 7 29 29 H 1.00905 * 110.99949 * 298.63850 * 11 10 9 30 30 H 1.09000 * 109.47066 * 300.00346 * 14 12 11 31 31 H 1.09003 * 109.47483 * 60.00149 * 14 12 11 32 32 H 1.09002 * 109.47488 * 59.99713 * 15 14 12 33 33 H 1.09004 * 109.47412 * 180.02562 * 15 14 12 34 34 H 1.08996 * 109.46884 * 179.97438 * 16 15 14 35 35 H 1.08994 * 109.47383 * 300.00330 * 16 15 14 36 36 H 1.08995 * 109.47369 * 299.99515 * 23 12 11 37 37 H 1.08997 * 109.47192 * 60.00176 * 23 12 11 38 38 H 1.08994 * 117.49720 * 0.02562 * 24 9 7 39 39 H 1.09007 * 117.49359 * 145.01882 * 24 9 7 40 40 H 1.08995 * 117.49879 * 252.51687 * 25 24 9 41 41 H 1.08998 * 117.49809 * 107.49010 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0802 -1.1965 0.0961 9 6 1.2563 -2.4961 -0.1262 10 6 0.6137 -3.0159 1.1614 11 7 1.6640 -3.3490 2.1329 12 6 1.0824 -3.7323 3.4263 13 1 0.1830 -3.1442 3.6087 14 6 0.7234 -5.2194 3.4033 15 6 0.1171 -5.6186 4.7501 16 6 1.1324 -5.3561 5.8643 17 6 1.4913 -3.8689 5.8872 18 1 0.5918 -3.2809 6.0693 19 6 2.5061 -3.6064 7.0018 20 9 3.6606 -4.3613 6.7686 21 9 2.8338 -2.2465 7.0232 22 9 1.9511 -3.9712 8.2331 23 6 2.0980 -3.4700 4.5400 24 6 1.8018 -3.5313 -1.1120 25 6 0.5202 -2.7629 -1.4408 26 1 -0.4850 0.8401 -0.0004 27 1 -0.0368 -2.2474 1.5787 28 1 0.0272 -3.9077 0.9404 29 1 2.2674 -4.0757 1.7781 30 1 -0.0001 -5.4063 2.6098 31 1 1.6228 -5.8076 3.2208 32 1 -0.7824 -5.0305 4.9323 33 1 -0.1382 -6.6782 4.7339 34 1 0.7003 -5.6401 6.8238 35 1 2.0318 -5.9442 5.6822 36 1 2.9974 -4.0580 4.3576 37 1 2.3537 -2.4105 4.5564 38 1 2.7020 -3.2707 -1.6685 39 1 1.7031 -4.5831 -0.8432 40 1 -0.4215 -3.3091 -1.3883 41 1 0.5772 -1.9967 -2.2139 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430036918.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:32 Heat of formation + Delta-G solvation = -168.572038 kcal Electronic energy + Delta-G solvation = -24335.281996 eV Core-core repulsion = 20412.959463 eV Total energy + Delta-G solvation = -3922.322533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.08812 -48.57595 -48.55254 -40.06017 -38.43249 -35.31993 -33.89245 -32.46615 -30.33258 -27.56853 -26.65787 -25.70577 -23.19435 -22.93222 -22.34354 -21.24036 -20.74177 -19.29995 -19.21232 -18.44341 -17.98812 -16.65331 -16.30397 -16.10996 -15.59362 -15.46560 -15.39433 -15.24532 -14.99565 -14.95328 -14.74093 -14.72895 -14.61844 -14.24374 -13.82622 -13.62441 -13.21385 -13.06740 -12.88966 -12.87646 -12.59190 -12.32972 -12.28614 -12.08461 -11.99799 -11.63728 -11.50710 -11.36069 -11.16088 -10.70282 -10.36310 -9.89429 -8.94664 -8.02613 -6.07624 1.40901 1.44523 1.54110 1.80022 2.48551 2.79926 2.96594 3.08760 3.28266 3.39074 3.66744 3.73660 3.94663 4.03356 4.16196 4.22467 4.35981 4.39180 4.46047 4.51845 4.59150 4.67770 4.77676 4.82449 4.93560 5.01753 5.02318 5.09340 5.11875 5.17868 5.21385 5.30861 5.38186 5.42722 5.65380 5.77918 5.93081 6.42250 6.55182 6.82570 6.95714 7.57406 9.06689 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.004534 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.210043 B = 6173.941400 C = 7234.499258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.476 4.476 8 H 0.046 0.954 9 C 0.024 3.976 10 C 0.129 3.871 11 N -0.678 5.678 12 C 0.095 3.905 13 H 0.061 0.939 14 C -0.145 4.145 15 C -0.104 4.104 16 C -0.112 4.112 17 C -0.124 4.124 18 H 0.121 0.879 19 C 0.455 3.545 20 F -0.186 7.186 21 F -0.194 7.194 22 F -0.185 7.185 23 C -0.099 4.099 24 C -0.186 4.186 25 C -0.172 4.172 26 H 0.255 0.745 27 H 0.042 0.958 28 H 0.008 0.992 29 H 0.338 0.662 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.803 -12.794 13.188 18.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.767 3.233 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.514 4.514 8 H 0.064 0.936 9 C 0.023 3.977 10 C 0.000 4.000 11 N -0.307 5.307 12 C -0.015 4.015 13 H 0.079 0.921 14 C -0.184 4.184 15 C -0.142 4.142 16 C -0.149 4.149 17 C -0.144 4.144 18 H 0.139 0.861 19 C 0.401 3.599 20 F -0.168 7.168 21 F -0.175 7.175 22 F -0.167 7.167 23 C -0.137 4.137 24 C -0.223 4.223 25 C -0.210 4.210 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.026 0.974 29 H 0.157 0.843 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.794 -11.988 13.387 17.987 hybrid contribution 0.136 0.642 -0.281 0.714 sum 0.930 -11.345 13.106 17.360 Atomic orbital electron populations 1.70095 1.06780 1.26428 1.51846 1.25519 0.95443 1.01346 0.95220 0.85787 0.79313 0.81016 0.77171 1.19559 1.20978 1.21244 1.20564 0.92291 0.90114 1.48428 0.93619 1.18986 0.97902 0.93578 0.87213 1.21121 0.91531 0.95306 0.92053 1.60154 1.21038 1.46457 1.03042 1.21449 0.95959 0.94712 0.89375 0.92077 1.22274 1.01473 0.96116 0.98541 1.21394 0.97725 1.02629 0.92496 1.21619 1.01074 0.91237 1.00969 1.22505 0.97418 1.02441 0.92059 0.86139 1.20795 0.82084 0.73408 0.83645 1.93151 1.52905 1.76292 1.94438 1.93175 1.93566 1.34076 1.96730 1.93157 1.85146 1.91481 1.46872 1.21452 0.98991 1.01996 0.91286 1.22928 0.96597 0.96403 1.06343 1.22480 0.94278 1.01965 1.02299 0.93587 0.93971 0.97382 0.84343 0.92456 0.90927 0.91395 0.89484 0.89261 0.90292 0.90550 0.92136 0.90760 0.89109 0.90974 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.28 13.10 21.45 0.28 -52.00 16 2 C 0.02 1.30 5.42 84.66 0.46 1.76 16 3 Si 0.94 44.51 29.54 68.60 2.03 46.53 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 7 C -0.48 -25.85 8.72 25.60 0.22 -25.63 16 8 H 0.05 2.54 7.82 -2.91 -0.02 2.52 16 9 C 0.02 1.14 1.47 -52.93 -0.08 1.06 16 10 C 0.13 5.49 5.34 86.30 0.46 5.95 16 11 N -0.68 -24.51 6.12 -491.59 -3.01 -27.52 16 12 C 0.10 2.70 2.47 44.91 0.11 2.81 16 13 H 0.06 1.92 7.71 -2.39 -0.02 1.90 16 14 C -0.14 -3.13 5.17 30.59 0.16 -2.97 16 15 C -0.10 -1.69 5.92 30.60 0.18 -1.51 16 16 C -0.11 -1.77 4.96 30.60 0.15 -1.62 16 17 C -0.12 -2.51 2.16 -10.78 -0.02 -2.53 16 18 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 19 C 0.45 10.14 2.69 71.98 0.19 10.33 16 20 F -0.19 -4.34 16.28 44.97 0.73 -3.61 16 21 F -0.19 -5.12 16.80 44.97 0.76 -4.36 16 22 F -0.19 -3.95 16.80 44.97 0.76 -3.20 16 23 C -0.10 -2.55 4.57 30.61 0.14 -2.41 16 24 C -0.19 -7.56 9.96 30.59 0.30 -7.26 16 25 C -0.17 -7.88 9.68 30.60 0.30 -7.59 16 26 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 27 H 0.04 2.09 7.91 -2.39 -0.02 2.07 16 28 H 0.01 0.32 7.52 -2.38 -0.02 0.30 16 29 H 0.34 11.22 8.53 -89.69 -0.76 10.46 16 30 H 0.06 1.34 7.56 -2.39 -0.02 1.32 16 31 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.09 1.17 7.80 -2.39 -0.02 1.16 16 35 H 0.08 1.23 7.80 -2.39 -0.02 1.21 16 36 H 0.08 1.91 7.81 -2.39 -0.02 1.89 16 37 H 0.06 1.86 7.80 -2.39 -0.02 1.84 16 38 H 0.07 3.04 8.14 -2.39 -0.02 3.03 16 39 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 40 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -59.44 340.19 4.38 -55.06 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.26 Total: 18.69 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 2.58 Total: -29.60 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -2.73 Total: -79.52 kcal Atomic # 9 Polarization: -13.41 SS G_CDS: 2.24 Total: -11.17 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -59.44 4.38 -55.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430036918.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.509 kcal (2) G-P(sol) polarization free energy of solvation -59.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds