Wall clock time and date at job start Tue Mar 31 2020 08:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99612 * 2 1 4 4 H 1.48497 * 109.47198 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47185 * 299.99840 * 3 2 1 6 6 H 1.48499 * 109.47072 * 59.99832 * 3 2 1 7 7 C 1.37869 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99846 * 170.49846 * 7 2 1 9 9 C 1.50696 * 120.00009 * 350.49843 * 7 2 1 10 10 C 1.52998 * 115.55202 * 324.77432 * 9 7 2 11 11 N 1.46899 * 109.47384 * 300.45101 * 10 9 7 12 12 C 1.46893 * 111.00253 * 185.17248 * 11 10 9 13 13 H 1.09008 * 109.47015 * 328.20192 * 12 11 10 14 14 C 1.52998 * 109.47388 * 88.20022 * 12 11 10 15 15 C 1.53002 * 109.46902 * 60.00031 * 14 12 11 16 16 C 1.53001 * 109.47049 * 60.00116 * 15 14 12 17 17 C 1.53007 * 109.47112 * 299.99918 * 16 15 14 18 18 H 1.09001 * 109.46950 * 299.99880 * 17 16 15 19 19 C 1.53001 * 109.47112 * 179.97438 * 17 16 15 20 20 F 1.39905 * 109.47063 * 59.99866 * 19 17 16 21 21 F 1.39901 * 109.47142 * 179.97438 * 19 17 16 22 22 F 1.39902 * 109.47225 * 300.00378 * 19 17 16 23 23 C 1.52994 * 109.46862 * 60.00068 * 17 16 15 24 24 C 1.53007 * 117.49895 * 110.44731 * 9 7 2 25 25 C 1.53003 * 117.49951 * 179.10407 * 9 7 2 26 26 H 0.97000 * 120.00159 * 5.00366 * 1 2 3 27 27 H 1.09006 * 109.47107 * 60.45009 * 10 9 7 28 28 H 1.09001 * 109.47302 * 180.44533 * 10 9 7 29 29 H 1.00910 * 110.99631 * 61.21859 * 11 10 9 30 30 H 1.09001 * 109.47564 * 180.02562 * 14 12 11 31 31 H 1.08998 * 109.47355 * 300.00130 * 14 12 11 32 32 H 1.09002 * 109.47326 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.46988 * 300.00325 * 15 14 12 34 34 H 1.09001 * 109.47054 * 60.00250 * 16 15 14 35 35 H 1.09000 * 109.47320 * 180.02562 * 16 15 14 36 36 H 1.09000 * 109.47137 * 179.97438 * 23 17 16 37 37 H 1.09001 * 109.47492 * 60.00144 * 23 17 16 38 38 H 1.09003 * 117.49649 * 215.00400 * 24 9 7 39 39 H 1.08996 * 117.49930 * 0.02562 * 24 9 7 40 40 H 1.08999 * 117.50036 * 359.97438 * 25 9 7 41 41 H 1.09008 * 117.49923 * 144.97499 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0735 -1.2003 -0.1539 9 6 1.2667 -2.4900 0.2165 10 6 0.0875 -2.4239 1.1892 11 7 0.5641 -1.9848 2.5075 12 6 -0.5184 -2.0269 3.4995 13 1 -1.4689 -1.8158 3.0093 14 6 -0.5714 -3.4163 4.1380 15 6 0.7627 -3.7126 4.8260 16 6 1.0222 -2.6633 5.9089 17 6 1.0751 -1.2738 5.2704 18 1 1.8784 -1.2426 4.5343 19 6 1.3339 -0.2244 6.3533 20 9 2.5536 -0.4951 6.9830 21 9 1.3829 1.0460 5.7694 22 9 0.3026 -0.2647 7.2977 23 6 -0.2589 -0.9776 4.5824 24 6 1.1468 -3.4418 -0.9754 25 6 2.0849 -3.7825 0.1852 26 1 -0.4850 0.8368 -0.0733 27 1 -0.6521 -1.7155 0.8159 28 1 -0.3667 -3.4108 1.2772 29 1 0.9719 -1.0632 2.4561 30 1 -1.3749 -3.4477 4.8738 31 1 -0.7562 -4.1639 3.3666 32 1 0.7249 -4.7023 5.2813 33 1 1.5660 -3.6813 4.0899 34 1 0.2189 -2.6946 6.6450 35 1 1.9728 -2.8740 6.3988 36 1 -0.2214 0.0124 4.1279 37 1 -1.0622 -1.0088 5.3185 38 1 0.2277 -4.0208 -1.0666 39 1 1.6020 -3.1308 -1.9156 40 1 3.1568 -3.6954 0.0079 41 1 1.7833 -4.5856 0.8578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430036919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:50 Heat of formation + Delta-G solvation = -151.104363 kcal Electronic energy + Delta-G solvation = -25205.451034 eV Core-core repulsion = 21283.885956 eV Total energy + Delta-G solvation = -3921.565078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 5.27 seconds Orbital eigenvalues (eV) -49.95507 -47.44142 -47.41280 -38.82696 -36.62172 -33.34248 -32.17841 -31.31177 -29.02992 -25.62065 -25.56893 -23.92952 -22.22959 -21.50481 -21.04043 -19.05343 -18.91131 -18.07503 -17.99809 -17.38897 -16.14082 -15.23368 -14.89449 -14.49268 -14.44032 -14.22806 -14.03878 -13.92454 -13.81762 -13.59688 -13.57759 -13.40814 -13.01986 -12.67298 -12.20112 -11.99478 -11.83835 -11.63925 -11.27073 -11.12086 -11.04302 -11.00752 -10.74934 -10.44836 -10.35634 -10.21410 -9.97899 -9.85680 -9.25909 -9.02924 -8.69270 -8.12996 -7.29300 -5.99928 -4.11653 2.94689 3.22255 3.33057 3.37113 3.96365 4.17316 4.24264 4.32708 4.80007 4.92487 4.97032 5.19018 5.26349 5.43029 5.49928 5.56681 5.62804 5.64641 5.75541 5.91820 6.11157 6.11598 6.18777 6.23376 6.43420 6.44048 6.47558 6.53527 6.72064 6.75258 6.80535 6.93085 6.99947 7.22732 7.39374 7.58160 7.98883 8.21871 8.45239 8.51418 8.87842 9.47481 10.91184 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.006496 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.312528 B = 4309.068144 C = 5430.629382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.886 3.114 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.475 4.475 8 H 0.059 0.941 9 C 0.061 3.939 10 C 0.095 3.905 11 N -0.669 5.669 12 C 0.091 3.909 13 H 0.045 0.955 14 C -0.105 4.105 15 C -0.105 4.105 16 C -0.110 4.110 17 C -0.124 4.124 18 H 0.127 0.873 19 C 0.448 3.552 20 F -0.188 7.188 21 F -0.184 7.184 22 F -0.188 7.188 23 C -0.117 4.117 24 C -0.209 4.209 25 C -0.202 4.202 26 H 0.260 0.740 27 H 0.086 0.914 28 H 0.023 0.977 29 H 0.348 0.652 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.288 -3.350 11.729 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.513 4.513 8 H 0.077 0.923 9 C 0.060 3.940 10 C -0.033 4.033 11 N -0.302 5.302 12 C -0.020 4.020 13 H 0.063 0.937 14 C -0.143 4.143 15 C -0.143 4.143 16 C -0.147 4.147 17 C -0.143 4.143 18 H 0.145 0.855 19 C 0.394 3.606 20 F -0.169 7.169 21 F -0.166 7.166 22 F -0.170 7.170 23 C -0.155 4.155 24 C -0.247 4.247 25 C -0.239 4.239 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.042 0.958 29 H 0.168 0.832 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.193 -3.785 11.995 12.635 hybrid contribution 0.002 1.868 -0.238 1.883 sum -1.191 -1.917 11.757 11.972 Atomic orbital electron populations 1.69821 1.05740 1.26347 1.50316 1.24958 0.94803 0.98890 0.94754 0.86613 0.80460 0.83786 0.77776 1.19645 1.21148 1.20680 1.20626 0.93729 0.89199 1.47736 0.92306 1.18912 0.94134 0.88418 0.92554 1.21634 0.97467 0.97431 0.86813 1.60551 1.29017 1.33206 1.07439 1.21336 0.94988 0.93355 0.92305 0.93719 1.21526 0.96677 0.97288 0.98856 1.21338 0.99484 0.96214 0.97218 1.21533 1.02198 0.92552 0.98464 1.22461 1.03446 0.93202 0.95225 0.85528 1.20947 0.73578 0.82840 0.83205 1.93150 1.45818 1.93734 1.84225 1.93184 1.96128 1.43295 1.83976 1.93131 1.59459 1.96571 1.67828 1.21782 0.94628 1.00429 0.98652 1.22952 0.99598 1.07762 0.94418 1.22788 0.96369 1.02451 1.02298 0.92994 0.89624 0.95815 0.83160 0.92962 0.91954 0.92697 0.89478 0.91637 0.91329 0.90834 0.91013 0.92025 0.90765 0.91208 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.80 10.61 55.43 0.59 -22.22 16 2 C 0.07 1.71 4.62 -17.82 -0.08 1.63 16 3 Si 0.89 20.16 29.55 -169.99 -5.02 15.14 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.48 -12.22 8.49 -34.45 -0.29 -12.52 16 8 H 0.06 1.55 7.83 -52.48 -0.41 1.14 16 9 C 0.06 1.42 2.05 -155.66 -0.32 1.11 16 10 C 0.10 2.07 4.68 -3.83 -0.02 2.05 16 11 N -0.67 -12.80 4.84 -106.73 -0.52 -13.32 16 12 C 0.09 1.45 2.83 -67.72 -0.19 1.26 16 13 H 0.04 0.77 7.81 -51.92 -0.41 0.37 16 14 C -0.11 -1.45 5.57 -26.73 -0.15 -1.60 16 15 C -0.11 -1.36 5.77 -26.73 -0.15 -1.51 16 16 C -0.11 -1.34 4.96 -26.73 -0.13 -1.47 16 17 C -0.12 -1.71 2.00 -90.62 -0.18 -1.89 16 18 H 0.13 1.91 7.39 -51.93 -0.38 1.53 16 19 C 0.45 6.29 2.69 37.16 0.10 6.39 16 20 F -0.19 -2.65 16.80 2.25 0.04 -2.61 16 21 F -0.18 -2.87 16.80 2.25 0.04 -2.83 16 22 F -0.19 -2.58 16.28 2.25 0.04 -2.54 16 23 C -0.12 -1.69 4.31 -26.73 -0.12 -1.81 16 24 C -0.21 -4.66 9.95 -26.69 -0.27 -4.93 16 25 C -0.20 -4.32 9.95 -26.69 -0.27 -4.59 16 26 H 0.26 6.51 8.32 -40.82 -0.34 6.17 16 27 H 0.09 2.10 5.67 -51.93 -0.29 1.81 16 28 H 0.02 0.49 7.54 -51.93 -0.39 0.10 16 29 H 0.35 7.41 6.85 -39.29 -0.27 7.14 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.92 7.61 -51.93 -0.40 0.52 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.31 7.60 -51.93 -0.39 0.91 16 34 H 0.06 0.75 7.80 -51.93 -0.41 0.34 16 35 H 0.07 0.79 7.80 -51.93 -0.41 0.38 16 36 H 0.07 1.16 7.78 -51.93 -0.40 0.76 16 37 H 0.07 0.93 7.80 -51.93 -0.41 0.53 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 40 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 LS Contribution 330.72 15.07 4.98 4.98 Total: -1.00 -24.83 330.72 -8.16 -32.99 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.24 Total: 8.29 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -2.07 Total: -17.88 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.07 Total: -35.54 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 0.11 Total: -7.99 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -24.83 -8.16 -32.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430036919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.114 kcal (2) G-P(sol) polarization free energy of solvation -24.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.28 seconds