Wall clock time and date at job start Tue Mar 31 2020 08:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99612 * 2 1 4 4 H 1.48497 * 109.47198 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47185 * 299.99840 * 3 2 1 6 6 H 1.48499 * 109.47072 * 59.99832 * 3 2 1 7 7 C 1.37869 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99846 * 170.49846 * 7 2 1 9 9 C 1.50696 * 120.00009 * 350.49843 * 7 2 1 10 10 C 1.52998 * 115.55202 * 324.77432 * 9 7 2 11 11 N 1.46899 * 109.47384 * 300.45101 * 10 9 7 12 12 C 1.46893 * 111.00253 * 185.17248 * 11 10 9 13 13 H 1.09008 * 109.47015 * 328.20192 * 12 11 10 14 14 C 1.52998 * 109.47388 * 88.20022 * 12 11 10 15 15 C 1.53002 * 109.46902 * 60.00031 * 14 12 11 16 16 C 1.53001 * 109.47049 * 60.00116 * 15 14 12 17 17 C 1.53007 * 109.47112 * 299.99918 * 16 15 14 18 18 H 1.09001 * 109.46950 * 299.99880 * 17 16 15 19 19 C 1.53001 * 109.47112 * 179.97438 * 17 16 15 20 20 F 1.39905 * 109.47063 * 59.99866 * 19 17 16 21 21 F 1.39901 * 109.47142 * 179.97438 * 19 17 16 22 22 F 1.39902 * 109.47225 * 300.00378 * 19 17 16 23 23 C 1.52994 * 109.46862 * 60.00068 * 17 16 15 24 24 C 1.53007 * 117.49895 * 110.44731 * 9 7 2 25 25 C 1.53003 * 117.49951 * 179.10407 * 9 7 2 26 26 H 0.97000 * 120.00159 * 5.00366 * 1 2 3 27 27 H 1.09006 * 109.47107 * 60.45009 * 10 9 7 28 28 H 1.09001 * 109.47302 * 180.44533 * 10 9 7 29 29 H 1.00910 * 110.99631 * 61.21859 * 11 10 9 30 30 H 1.09001 * 109.47564 * 180.02562 * 14 12 11 31 31 H 1.08998 * 109.47355 * 300.00130 * 14 12 11 32 32 H 1.09002 * 109.47326 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.46988 * 300.00325 * 15 14 12 34 34 H 1.09001 * 109.47054 * 60.00250 * 16 15 14 35 35 H 1.09000 * 109.47320 * 180.02562 * 16 15 14 36 36 H 1.09000 * 109.47137 * 179.97438 * 23 17 16 37 37 H 1.09001 * 109.47492 * 60.00144 * 23 17 16 38 38 H 1.09003 * 117.49649 * 215.00400 * 24 9 7 39 39 H 1.08996 * 117.49930 * 0.02562 * 24 9 7 40 40 H 1.08999 * 117.50036 * 359.97438 * 25 9 7 41 41 H 1.09008 * 117.49923 * 144.97499 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0735 -1.2003 -0.1539 9 6 1.2667 -2.4900 0.2165 10 6 0.0875 -2.4239 1.1892 11 7 0.5641 -1.9848 2.5075 12 6 -0.5184 -2.0269 3.4995 13 1 -1.4689 -1.8158 3.0093 14 6 -0.5714 -3.4163 4.1380 15 6 0.7627 -3.7126 4.8260 16 6 1.0222 -2.6633 5.9089 17 6 1.0751 -1.2738 5.2704 18 1 1.8784 -1.2426 4.5343 19 6 1.3339 -0.2244 6.3533 20 9 2.5536 -0.4951 6.9830 21 9 1.3829 1.0460 5.7694 22 9 0.3026 -0.2647 7.2977 23 6 -0.2589 -0.9776 4.5824 24 6 1.1468 -3.4418 -0.9754 25 6 2.0849 -3.7825 0.1852 26 1 -0.4850 0.8368 -0.0733 27 1 -0.6521 -1.7155 0.8159 28 1 -0.3667 -3.4108 1.2772 29 1 0.9719 -1.0632 2.4561 30 1 -1.3749 -3.4477 4.8738 31 1 -0.7562 -4.1639 3.3666 32 1 0.7249 -4.7023 5.2813 33 1 1.5660 -3.6813 4.0899 34 1 0.2189 -2.6946 6.6450 35 1 1.9728 -2.8740 6.3988 36 1 -0.2214 0.0124 4.1279 37 1 -1.0622 -1.0088 5.3185 38 1 0.2277 -4.0208 -1.0666 39 1 1.6020 -3.1308 -1.9156 40 1 3.1568 -3.6954 0.0079 41 1 1.7833 -4.5856 0.8578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430036919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:44 Heat of formation + Delta-G solvation = -161.745132 kcal Electronic energy + Delta-G solvation = -25205.912452 eV Core-core repulsion = 21283.885956 eV Total energy + Delta-G solvation = -3922.026496 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.09302 -48.58464 -48.55144 -40.07850 -38.32550 -34.75792 -34.09867 -32.42960 -30.36940 -27.56771 -26.69650 -25.54470 -23.35218 -22.85206 -22.59947 -20.83748 -20.14801 -19.22437 -19.16032 -18.56520 -17.97882 -16.75666 -16.34185 -15.99803 -15.72854 -15.58468 -15.34545 -15.22801 -14.99591 -14.83431 -14.73548 -14.72721 -14.40849 -14.15032 -13.62777 -13.31104 -13.21895 -12.92097 -12.85464 -12.71056 -12.67705 -12.47215 -12.23138 -12.15358 -11.97283 -11.47540 -11.18979 -11.11069 -11.02328 -10.88886 -10.49692 -9.97179 -8.90346 -7.92149 -6.11971 1.38280 1.45671 1.53195 1.81619 2.42441 2.84000 3.02708 3.05326 3.12026 3.51299 3.80151 3.81679 3.95395 4.11309 4.30435 4.37059 4.42052 4.48783 4.52742 4.66071 4.69050 4.77405 4.93222 4.95088 5.02257 5.05104 5.10168 5.17002 5.24124 5.25946 5.37505 5.40521 5.49298 5.61482 5.65965 5.72820 6.09942 6.51284 6.63278 6.78758 6.97060 7.48724 8.93901 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.006496 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.312528 B = 4309.068144 C = 5430.629382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.038 3.962 3 Si 0.935 3.065 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.492 4.492 8 H 0.044 0.956 9 C 0.033 3.967 10 C 0.109 3.891 11 N -0.663 5.663 12 C 0.089 3.911 13 H 0.029 0.971 14 C -0.100 4.100 15 C -0.100 4.100 16 C -0.104 4.104 17 C -0.120 4.120 18 H 0.110 0.890 19 C 0.452 3.548 20 F -0.187 7.187 21 F -0.196 7.196 22 F -0.183 7.183 23 C -0.111 4.111 24 C -0.211 4.211 25 C -0.182 4.182 26 H 0.259 0.741 27 H 0.057 0.943 28 H 0.031 0.969 29 H 0.334 0.666 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 -4.172 13.303 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.162 4.162 3 Si 0.762 3.238 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.033 3.967 10 C -0.020 4.020 11 N -0.294 5.294 12 C -0.022 4.022 13 H 0.047 0.953 14 C -0.138 4.138 15 C -0.137 4.137 16 C -0.142 4.142 17 C -0.139 4.139 18 H 0.128 0.872 19 C 0.398 3.602 20 F -0.168 7.168 21 F -0.177 7.177 22 F -0.165 7.165 23 C -0.149 4.149 24 C -0.249 4.249 25 C -0.219 4.219 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.152 0.848 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.330 -4.623 13.573 14.400 hybrid contribution 0.037 2.114 -0.737 2.239 sum -1.292 -2.509 12.836 13.142 Atomic orbital electron populations 1.69948 1.06407 1.26643 1.50578 1.25400 0.95359 1.00860 0.94557 0.85854 0.79352 0.81056 0.77523 1.19814 1.21289 1.20445 1.20748 0.93203 0.90707 1.48291 0.93786 1.19072 0.95401 0.88433 0.93837 1.21347 0.96051 0.96937 0.87653 1.60577 1.30041 1.32028 1.06726 1.21446 0.93171 0.95571 0.91976 0.95266 1.21498 0.98167 0.95076 0.99071 1.21279 0.97911 0.97672 0.96876 1.21537 1.03440 0.90843 0.98356 1.22397 1.02285 0.94341 0.94898 0.87178 1.20916 0.73679 0.82328 0.83253 1.93153 1.45822 1.93668 1.84182 1.93164 1.96191 1.44153 1.84229 1.93140 1.59210 1.96510 1.67615 1.21702 0.95843 0.98821 0.98528 1.22949 1.00420 1.07605 0.93969 1.22751 0.96011 1.01533 1.01614 0.93143 0.92545 0.95061 0.84826 0.90579 0.92875 0.90436 0.91794 0.89998 0.90299 0.92731 0.88992 0.90770 0.91744 0.91364 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.90 10.61 21.44 0.23 -46.67 16 2 C 0.04 1.96 4.62 84.65 0.39 2.35 16 3 Si 0.94 41.77 29.55 68.60 2.03 43.80 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.49 -25.60 8.49 25.60 0.22 -25.38 16 8 H 0.04 2.36 7.83 -2.91 -0.02 2.34 16 9 C 0.03 1.56 2.05 -52.93 -0.11 1.46 16 10 C 0.11 4.78 4.68 86.30 0.40 5.18 16 11 N -0.66 -25.36 4.84 -491.57 -2.38 -27.74 16 12 C 0.09 2.77 2.83 44.92 0.13 2.89 16 13 H 0.03 1.01 7.81 -2.38 -0.02 0.99 16 14 C -0.10 -2.54 5.57 30.59 0.17 -2.37 16 15 C -0.10 -2.32 5.77 30.60 0.18 -2.14 16 16 C -0.10 -2.24 4.96 30.60 0.15 -2.09 16 17 C -0.12 -3.12 2.00 -10.79 -0.02 -3.14 16 18 H 0.11 3.28 7.39 -2.39 -0.02 3.27 16 19 C 0.45 11.97 2.69 71.98 0.19 12.16 16 20 F -0.19 -4.94 16.80 44.97 0.76 -4.18 16 21 F -0.20 -5.96 16.80 44.97 0.76 -5.20 16 22 F -0.18 -4.59 16.28 44.97 0.73 -3.86 16 23 C -0.11 -3.09 4.31 30.59 0.13 -2.96 16 24 C -0.21 -9.32 9.95 30.62 0.30 -9.02 16 25 C -0.18 -7.61 9.95 30.62 0.30 -7.31 16 26 H 0.26 13.11 8.32 -92.71 -0.77 12.34 16 27 H 0.06 2.82 5.67 -2.38 -0.01 2.81 16 28 H 0.03 1.29 7.54 -2.39 -0.02 1.27 16 29 H 0.33 14.44 6.85 -89.69 -0.61 13.83 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.45 7.61 -2.39 -0.02 1.44 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.81 7.60 -2.39 -0.02 1.79 16 34 H 0.08 1.54 7.80 -2.39 -0.02 1.52 16 35 H 0.08 1.57 7.80 -2.39 -0.02 1.55 16 36 H 0.05 1.72 7.78 -2.39 -0.02 1.70 16 37 H 0.09 2.18 7.80 -2.39 -0.02 2.17 16 38 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 Total: -1.00 -52.30 330.72 4.98 -47.32 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.42 Total: 26.89 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: 2.44 Total: -30.36 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.15 Total: -74.41 kcal Atomic # 9 Polarization: -15.48 SS G_CDS: 2.24 Total: -13.24 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -52.30 4.98 -47.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430036919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.427 kcal (2) G-P(sol) polarization free energy of solvation -52.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds