Wall clock time and date at job start Tue Mar 31 2020 08:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00107 * 2 1 4 4 H 1.48499 * 109.46992 * 270.00078 * 3 2 1 5 5 H 1.48505 * 109.46960 * 29.99934 * 3 2 1 6 6 H 1.48496 * 109.47389 * 149.99737 * 3 2 1 7 7 C 1.37879 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99563 * 173.44239 * 7 2 1 9 9 C 1.50692 * 120.00011 * 353.43806 * 7 2 1 10 10 C 1.53003 * 115.54862 * 85.28313 * 9 7 2 11 11 N 1.46897 * 109.47063 * 39.57834 * 10 9 7 12 12 C 1.46898 * 111.00163 * 174.73239 * 11 10 9 13 13 H 1.09003 * 109.46876 * 34.99872 * 12 11 10 14 14 C 1.52998 * 109.47261 * 274.99804 * 12 11 10 15 15 C 1.52992 * 109.47335 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47153 * 60.00561 * 15 14 12 17 17 C 1.53009 * 109.46806 * 299.99663 * 16 15 14 18 18 H 1.08996 * 109.47187 * 299.99873 * 17 16 15 19 19 C 1.53005 * 109.47063 * 179.97438 * 17 16 15 20 20 F 1.39898 * 109.46910 * 60.00587 * 19 17 16 21 21 F 1.39898 * 109.46823 * 180.02562 * 19 17 16 22 22 F 1.39897 * 109.46924 * 299.99873 * 19 17 16 23 23 C 1.52999 * 109.47153 * 154.99763 * 12 11 10 24 24 C 1.53004 * 117.52186 * 230.98507 * 9 7 2 25 25 C 1.53000 * 117.50073 * 299.61672 * 9 7 2 26 26 H 0.97001 * 120.00306 * 5.07113 * 1 2 3 27 27 H 1.08994 * 109.47209 * 279.57558 * 10 9 7 28 28 H 1.09003 * 109.47249 * 159.57551 * 10 9 7 29 29 H 1.00905 * 110.99786 * 298.68879 * 11 10 9 30 30 H 1.08996 * 109.47106 * 300.00213 * 14 12 11 31 31 H 1.09006 * 109.46929 * 59.99976 * 14 12 11 32 32 H 1.09000 * 109.47436 * 180.02562 * 15 14 12 33 33 H 1.08996 * 109.47453 * 300.00313 * 15 14 12 34 34 H 1.08997 * 109.47494 * 59.99153 * 16 15 14 35 35 H 1.09000 * 109.47372 * 180.02562 * 16 15 14 36 36 H 1.08997 * 109.47687 * 299.99871 * 23 12 11 37 37 H 1.09003 * 109.47140 * 60.00271 * 23 12 11 38 38 H 1.08991 * 117.49988 * 214.97364 * 24 9 7 39 39 H 1.09004 * 117.49346 * 359.97438 * 24 9 7 40 40 H 1.09001 * 117.49999 * 359.97191 * 25 9 7 41 41 H 1.09002 * 117.50169 * 144.97122 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0792 -1.1970 -0.1074 9 6 1.2585 -2.4949 0.1480 10 6 0.6977 -3.0856 -1.1472 11 7 1.6688 -2.8955 -2.2328 12 6 1.2195 -3.5599 -3.4635 13 1 0.1339 -3.4947 -3.5360 14 6 1.6412 -5.0303 -3.4323 15 6 1.1727 -5.7225 -4.7138 16 6 1.8065 -5.0359 -5.9253 17 6 1.3848 -3.5654 -5.9565 18 1 0.2992 -3.5002 -6.0287 19 6 2.0191 -2.8786 -7.1677 20 9 1.5911 -3.5113 -8.3397 21 9 1.6340 -1.5339 -7.1959 22 9 3.4125 -2.9622 -7.0744 23 6 1.8537 -2.8731 -4.6746 24 6 1.7501 -3.4739 1.2161 25 6 0.4466 -2.7015 1.4283 26 1 -0.4850 0.8367 -0.0743 27 1 -0.2351 -2.5826 -1.4019 28 1 0.5104 -4.1505 -1.0096 29 1 1.8433 -1.9148 -2.3943 30 1 2.7268 -5.0955 -3.3598 31 1 1.1893 -5.5197 -2.5694 32 1 1.4727 -6.7702 -4.6914 33 1 0.0871 -5.6573 -4.7859 34 1 2.8921 -5.1010 -5.8531 35 1 1.4724 -5.5287 -6.8383 36 1 1.5534 -1.8255 -4.6969 37 1 2.9394 -2.9383 -4.6021 38 1 1.6741 -4.5387 0.9961 39 1 2.6138 -3.1772 1.8113 40 1 0.4524 -1.8966 2.1633 41 1 -0.4873 -3.2578 1.3478 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430036921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:17 Heat of formation + Delta-G solvation = -155.778639 kcal Electronic energy + Delta-G solvation = -24405.333499 eV Core-core repulsion = 20483.565729 eV Total energy + Delta-G solvation = -3921.767770 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.13846 -47.63372 -47.58371 -38.87058 -36.69719 -33.88697 -31.91575 -31.58030 -29.09902 -25.74905 -25.52268 -24.12406 -22.36953 -21.21381 -20.96304 -19.88943 -19.03401 -18.27908 -18.25834 -17.41558 -15.91949 -15.25549 -14.84457 -14.70351 -14.58208 -14.38267 -14.18056 -14.13782 -14.00460 -13.77395 -13.75464 -13.57074 -13.42572 -12.84539 -12.30652 -12.08150 -11.91234 -11.79471 -11.41873 -11.29026 -11.11508 -10.96341 -10.85632 -10.64574 -10.43116 -10.31905 -10.12408 -10.09013 -9.37395 -8.78219 -8.42948 -8.06937 -7.40536 -6.02062 -4.06532 2.72573 3.28567 3.36847 3.40920 3.73210 3.93263 3.99363 4.40540 4.57533 4.68973 4.90613 5.08077 5.16747 5.24774 5.26944 5.36456 5.38293 5.46671 5.53634 5.68876 5.86509 5.97194 6.04886 6.13193 6.15809 6.25410 6.40121 6.43171 6.56128 6.59700 6.79009 6.83202 6.97703 7.15370 7.45125 7.53673 7.89666 8.07892 8.38642 8.54563 8.96814 9.57882 11.05888 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.004708 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.799593 B = 5946.299731 C = 7111.615769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.482 4.482 8 H 0.061 0.939 9 C 0.051 3.949 10 C 0.109 3.891 11 N -0.670 5.670 12 C 0.092 3.908 13 H 0.036 0.964 14 C -0.109 4.109 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.128 4.128 18 H 0.111 0.889 19 C 0.453 3.547 20 F -0.188 7.188 21 F -0.183 7.183 22 F -0.182 7.182 23 C -0.120 4.120 24 C -0.207 4.207 25 C -0.163 4.163 26 H 0.258 0.742 27 H 0.027 0.973 28 H 0.037 0.963 29 H 0.355 0.645 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 -9.144 -12.928 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.050 3.950 10 C -0.020 4.020 11 N -0.303 5.303 12 C -0.019 4.019 13 H 0.054 0.946 14 C -0.147 4.147 15 C -0.152 4.152 16 C -0.154 4.154 17 C -0.148 4.148 18 H 0.130 0.870 19 C 0.399 3.601 20 F -0.170 7.170 21 F -0.165 7.165 22 F -0.164 7.164 23 C -0.158 4.158 24 C -0.244 4.244 25 C -0.201 4.201 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.176 0.824 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.371 -9.496 -12.679 15.900 hybrid contribution -0.323 1.755 -0.508 1.855 sum 1.047 -7.741 -13.188 15.328 Atomic orbital electron populations 1.69992 1.05838 1.26547 1.49598 1.25001 0.94756 0.98753 0.94941 0.86694 0.80054 0.83768 0.78147 1.20703 1.21393 1.19827 1.20400 0.93150 0.88488 1.50008 0.92038 1.18786 0.97046 0.93600 0.85560 1.21389 0.92381 0.96376 0.91835 1.60442 1.46094 1.20076 1.03654 1.21358 0.96563 0.94254 0.89712 0.94560 1.21584 1.01963 0.94881 0.96314 1.21496 1.00377 0.99222 0.94122 1.21608 1.02141 0.91846 0.99769 1.22503 1.02710 0.97515 0.92038 0.87046 1.20718 0.76909 0.77276 0.85244 1.93153 1.89725 1.82043 1.52046 1.93187 1.90891 1.35639 1.96770 1.93166 1.30866 1.96038 1.96281 1.21799 1.02678 0.99551 0.91746 1.22981 0.98024 0.95577 1.07831 1.22519 0.92186 1.01313 1.04124 0.93176 0.95469 0.94430 0.82391 0.91123 0.91749 0.91328 0.91914 0.90487 0.91062 0.90663 0.89713 0.91937 0.90796 0.90303 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.24 12.92 55.43 0.72 -23.52 16 2 C 0.07 1.80 5.39 -17.82 -0.10 1.70 16 3 Si 0.89 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.48 -12.57 7.47 -34.44 -0.26 -12.83 16 8 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 9 C 0.05 1.21 1.76 -155.66 -0.27 0.94 16 10 C 0.11 2.34 5.58 -3.82 -0.02 2.32 16 11 N -0.67 -12.85 6.07 -106.73 -0.65 -13.50 16 12 C 0.09 1.38 2.49 -67.72 -0.17 1.21 16 13 H 0.04 0.57 7.86 -51.93 -0.41 0.16 16 14 C -0.11 -1.43 5.42 -26.74 -0.14 -1.57 16 15 C -0.11 -1.15 5.92 -26.74 -0.16 -1.31 16 16 C -0.12 -1.13 4.96 -26.73 -0.13 -1.27 16 17 C -0.13 -1.41 2.17 -90.59 -0.20 -1.60 16 18 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 19 C 0.45 5.38 2.69 37.16 0.10 5.48 16 20 F -0.19 -2.19 16.80 2.25 0.04 -2.16 16 21 F -0.18 -2.43 16.80 2.25 0.04 -2.40 16 22 F -0.18 -2.30 16.28 2.25 0.04 -2.27 16 23 C -0.12 -1.60 4.23 -26.71 -0.11 -1.71 16 24 C -0.21 -4.53 9.88 -26.73 -0.26 -4.80 16 25 C -0.16 -3.82 9.45 -26.73 -0.25 -4.07 16 26 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.75 7.13 -51.93 -0.37 0.38 16 29 H 0.35 7.45 7.32 -39.29 -0.29 7.16 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.90 7.39 -51.93 -0.38 0.51 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.77 7.80 -51.93 -0.41 0.36 16 35 H 0.07 0.61 7.80 -51.93 -0.41 0.21 16 36 H 0.07 1.07 7.78 -51.93 -0.40 0.67 16 37 H 0.08 1.16 7.80 -51.93 -0.41 0.76 16 38 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 39 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.08 1.98 8.14 -51.93 -0.42 1.55 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 337.38 15.07 5.08 5.08 Total: -1.00 -26.66 337.38 -8.15 -34.82 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.42 Total: 5.79 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -1.98 Total: -17.51 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.07 Total: -37.02 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.11 Total: -6.82 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.66 -8.15 -34.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430036921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.960 kcal (2) G-P(sol) polarization free energy of solvation -26.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds