Wall clock time and date at job start Tue Mar 31 2020 08:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00107 * 2 1 4 4 H 1.48499 * 109.46992 * 270.00078 * 3 2 1 5 5 H 1.48505 * 109.46960 * 29.99934 * 3 2 1 6 6 H 1.48496 * 109.47389 * 149.99737 * 3 2 1 7 7 C 1.37879 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99563 * 173.44239 * 7 2 1 9 9 C 1.50692 * 120.00011 * 353.43806 * 7 2 1 10 10 C 1.53003 * 115.54862 * 85.28313 * 9 7 2 11 11 N 1.46897 * 109.47063 * 39.57834 * 10 9 7 12 12 C 1.46898 * 111.00163 * 174.73239 * 11 10 9 13 13 H 1.09003 * 109.46876 * 34.99872 * 12 11 10 14 14 C 1.52998 * 109.47261 * 274.99804 * 12 11 10 15 15 C 1.52992 * 109.47335 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47153 * 60.00561 * 15 14 12 17 17 C 1.53009 * 109.46806 * 299.99663 * 16 15 14 18 18 H 1.08996 * 109.47187 * 299.99873 * 17 16 15 19 19 C 1.53005 * 109.47063 * 179.97438 * 17 16 15 20 20 F 1.39898 * 109.46910 * 60.00587 * 19 17 16 21 21 F 1.39898 * 109.46823 * 180.02562 * 19 17 16 22 22 F 1.39897 * 109.46924 * 299.99873 * 19 17 16 23 23 C 1.52999 * 109.47153 * 154.99763 * 12 11 10 24 24 C 1.53004 * 117.52186 * 230.98507 * 9 7 2 25 25 C 1.53000 * 117.50073 * 299.61672 * 9 7 2 26 26 H 0.97001 * 120.00306 * 5.07113 * 1 2 3 27 27 H 1.08994 * 109.47209 * 279.57558 * 10 9 7 28 28 H 1.09003 * 109.47249 * 159.57551 * 10 9 7 29 29 H 1.00905 * 110.99786 * 298.68879 * 11 10 9 30 30 H 1.08996 * 109.47106 * 300.00213 * 14 12 11 31 31 H 1.09006 * 109.46929 * 59.99976 * 14 12 11 32 32 H 1.09000 * 109.47436 * 180.02562 * 15 14 12 33 33 H 1.08996 * 109.47453 * 300.00313 * 15 14 12 34 34 H 1.08997 * 109.47494 * 59.99153 * 16 15 14 35 35 H 1.09000 * 109.47372 * 180.02562 * 16 15 14 36 36 H 1.08997 * 109.47687 * 299.99871 * 23 12 11 37 37 H 1.09003 * 109.47140 * 60.00271 * 23 12 11 38 38 H 1.08991 * 117.49988 * 214.97364 * 24 9 7 39 39 H 1.09004 * 117.49346 * 359.97438 * 24 9 7 40 40 H 1.09001 * 117.49999 * 359.97191 * 25 9 7 41 41 H 1.09002 * 117.50169 * 144.97122 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0792 -1.1970 -0.1074 9 6 1.2585 -2.4949 0.1480 10 6 0.6977 -3.0856 -1.1472 11 7 1.6688 -2.8955 -2.2328 12 6 1.2195 -3.5599 -3.4635 13 1 0.1339 -3.4947 -3.5360 14 6 1.6412 -5.0303 -3.4323 15 6 1.1727 -5.7225 -4.7138 16 6 1.8065 -5.0359 -5.9253 17 6 1.3848 -3.5654 -5.9565 18 1 0.2992 -3.5002 -6.0287 19 6 2.0191 -2.8786 -7.1677 20 9 1.5911 -3.5113 -8.3397 21 9 1.6340 -1.5339 -7.1959 22 9 3.4125 -2.9622 -7.0744 23 6 1.8537 -2.8731 -4.6746 24 6 1.7501 -3.4739 1.2161 25 6 0.4466 -2.7015 1.4283 26 1 -0.4850 0.8367 -0.0743 27 1 -0.2351 -2.5826 -1.4019 28 1 0.5104 -4.1505 -1.0096 29 1 1.8433 -1.9148 -2.3943 30 1 2.7268 -5.0955 -3.3598 31 1 1.1893 -5.5197 -2.5694 32 1 1.4727 -6.7702 -4.6914 33 1 0.0871 -5.6573 -4.7859 34 1 2.8921 -5.1010 -5.8531 35 1 1.4724 -5.5287 -6.8383 36 1 1.5534 -1.8255 -4.6969 37 1 2.9394 -2.9383 -4.6021 38 1 1.6741 -4.5387 0.9961 39 1 2.6138 -3.1772 1.8113 40 1 0.4524 -1.8966 2.1633 41 1 -0.4873 -3.2578 1.3478 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430036921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:09 Heat of formation + Delta-G solvation = -168.820290 kcal Electronic energy + Delta-G solvation = -24405.899027 eV Core-core repulsion = 20483.565729 eV Total energy + Delta-G solvation = -3922.333298 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 4.33 seconds Orbital eigenvalues (eV) -51.10791 -48.59928 -48.56844 -39.99060 -38.41142 -35.25138 -33.94010 -32.53444 -30.36935 -27.50942 -26.73132 -25.68104 -23.33858 -22.85385 -22.21858 -21.07255 -20.75090 -19.27170 -19.24127 -18.39942 -17.84242 -16.58616 -16.30387 -16.17265 -15.89461 -15.55352 -15.38345 -15.22233 -15.06539 -14.92113 -14.76727 -14.74581 -14.62391 -14.35390 -13.68381 -13.43625 -13.12854 -13.06044 -12.87351 -12.85332 -12.81580 -12.34204 -12.27031 -12.18397 -11.93914 -11.58848 -11.45044 -11.21811 -11.10496 -10.72075 -10.36933 -9.90061 -8.99104 -8.05447 -6.13976 1.41235 1.45089 1.53080 1.77760 2.44987 2.78514 2.95005 3.06232 3.22351 3.40658 3.64498 3.75344 3.95601 4.00076 4.17598 4.29529 4.37618 4.40803 4.44986 4.48564 4.62723 4.65688 4.80040 4.89541 5.01039 5.03985 5.06313 5.09027 5.14953 5.20621 5.28047 5.30396 5.36365 5.54291 5.67743 5.68100 5.82966 6.43248 6.61154 6.75548 6.93881 7.52497 9.01888 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.004708 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.799593 B = 5946.299731 C = 7111.615769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.028 3.972 3 Si 0.940 3.060 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.486 4.486 8 H 0.050 0.950 9 C 0.023 3.977 10 C 0.125 3.875 11 N -0.674 5.674 12 C 0.090 3.910 13 H 0.032 0.968 14 C -0.104 4.104 15 C -0.106 4.106 16 C -0.113 4.113 17 C -0.121 4.121 18 H 0.124 0.876 19 C 0.454 3.546 20 F -0.184 7.184 21 F -0.194 7.194 22 F -0.187 7.187 23 C -0.114 4.114 24 C -0.185 4.185 25 C -0.169 4.169 26 H 0.257 0.743 27 H -0.001 1.001 28 H 0.054 0.946 29 H 0.341 0.659 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 -10.584 -14.063 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.172 4.172 3 Si 0.767 3.233 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.197 1.197 7 C -0.525 4.525 8 H 0.069 0.931 9 C 0.022 3.978 10 C -0.005 4.005 11 N -0.305 5.305 12 C -0.020 4.020 13 H 0.050 0.950 14 C -0.143 4.143 15 C -0.144 4.144 16 C -0.150 4.150 17 C -0.141 4.141 18 H 0.142 0.858 19 C 0.400 3.600 20 F -0.165 7.165 21 F -0.175 7.175 22 F -0.168 7.168 23 C -0.152 4.152 24 C -0.222 4.222 25 C -0.207 4.207 26 H 0.066 0.934 27 H 0.017 0.983 28 H 0.072 0.928 29 H 0.160 0.840 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.735 -10.955 -13.822 17.722 hybrid contribution -0.407 2.184 -0.150 2.227 sum 1.328 -8.771 -13.972 16.550 Atomic orbital electron populations 1.70090 1.06906 1.26947 1.50824 1.25559 0.95359 1.01326 0.94932 0.85830 0.78810 0.80486 0.78179 1.20118 1.21639 1.19737 1.20546 0.92730 0.89809 1.49378 0.93147 1.19007 0.97898 0.93893 0.86964 1.21146 0.91330 0.96561 0.91448 1.60464 1.45695 1.19235 1.05126 1.21481 0.96407 0.95481 0.88584 0.94995 1.21537 1.01550 0.93263 0.97910 1.21453 1.00800 0.99890 0.92265 1.21631 1.02173 0.90649 1.00556 1.22478 1.03330 0.98099 0.90151 0.85782 1.20800 0.76675 0.76872 0.85630 1.93161 1.89644 1.81861 1.51853 1.93170 1.90963 1.36555 1.96837 1.93158 1.31346 1.96020 1.96324 1.21677 1.02213 0.98923 0.92412 1.22973 0.96825 0.96523 1.05914 1.22423 0.93521 1.01310 1.03433 0.93409 0.98325 0.92810 0.84012 0.91682 0.92567 0.89304 0.91159 0.90542 0.89044 0.92071 0.90201 0.89361 0.91075 0.92732 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.77 12.92 21.45 0.28 -50.49 16 2 C 0.03 1.49 5.39 84.66 0.46 1.95 16 3 Si 0.94 42.87 29.55 68.60 2.03 44.90 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.49 -25.59 7.47 25.60 0.19 -25.40 16 8 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 9 C 0.02 1.10 1.76 -52.93 -0.09 1.01 16 10 C 0.12 5.33 5.58 86.30 0.48 5.81 16 11 N -0.67 -25.86 6.07 -491.58 -2.98 -28.84 16 12 C 0.09 2.65 2.49 44.91 0.11 2.76 16 13 H 0.03 0.98 7.86 -2.39 -0.02 0.96 16 14 C -0.10 -2.53 5.42 30.59 0.17 -2.36 16 15 C -0.11 -1.80 5.92 30.59 0.18 -1.62 16 16 C -0.11 -1.86 4.96 30.60 0.15 -1.71 16 17 C -0.12 -2.43 2.17 -10.77 -0.02 -2.45 16 18 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 19 C 0.45 10.07 2.69 71.98 0.19 10.26 16 20 F -0.18 -3.87 16.80 44.97 0.76 -3.12 16 21 F -0.19 -4.97 16.80 44.97 0.76 -4.22 16 22 F -0.19 -4.47 16.28 44.97 0.73 -3.74 16 23 C -0.11 -2.97 4.23 30.61 0.13 -2.84 16 24 C -0.19 -7.89 9.88 30.60 0.30 -7.59 16 25 C -0.17 -7.88 9.45 30.60 0.29 -7.59 16 26 H 0.26 13.87 8.32 -92.71 -0.77 13.10 16 27 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.05 2.09 7.13 -2.39 -0.02 2.07 16 29 H 0.34 14.59 7.32 -89.69 -0.66 13.93 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.45 7.39 -2.38 -0.02 1.44 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.31 7.80 -2.39 -0.02 1.29 16 35 H 0.09 1.21 7.80 -2.39 -0.02 1.20 16 36 H 0.06 1.75 7.78 -2.39 -0.02 1.73 16 37 H 0.08 2.15 7.80 -2.39 -0.02 2.13 16 38 H 0.09 3.30 8.08 -2.39 -0.02 3.28 16 39 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.05 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -56.70 337.38 4.47 -52.23 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.37 Total: 23.04 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 2.54 Total: -29.78 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -2.71 Total: -79.33 kcal Atomic # 9 Polarization: -13.31 SS G_CDS: 2.24 Total: -11.07 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -56.70 4.47 -52.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430036921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.590 kcal (2) G-P(sol) polarization free energy of solvation -56.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.33 seconds