Wall clock time and date at job start Tue Mar 31 2020 06:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00061 * 2 1 4 4 N 1.46899 * 109.47087 * 123.01233 * 3 2 1 5 5 C 1.46894 * 111.00413 * 63.23229 * 4 3 2 6 6 C 1.50705 * 109.47072 * 66.04465 * 5 4 3 7 7 H 1.08001 * 119.99691 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99998 * 179.97438 * 6 5 4 9 9 N 1.31507 * 119.99948 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00057 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46932 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.46900 * 120.00218 * 10 8 6 13 13 H 1.48493 * 109.47314 * 240.00366 * 10 8 6 14 14 C 1.46897 * 110.99898 * 299.27638 * 4 3 2 15 15 C 1.50708 * 109.47303 * 288.01079 * 14 4 3 16 16 C 1.38321 * 119.95891 * 272.43892 * 15 14 4 17 17 C 1.38281 * 120.16098 * 180.02562 * 16 15 14 18 18 C 1.38107 * 120.07906 * 359.68177 * 17 16 15 19 19 C 1.38954 * 119.91745 * 0.57281 * 18 17 16 20 20 S 1.76195 * 120.08026 * 179.72126 * 19 18 17 21 21 C 1.81401 * 103.00066 * 359.72630 * 20 19 18 22 22 C 1.52997 * 109.47454 * 179.97438 * 21 20 19 23 23 C 1.38066 * 119.95744 * 92.41937 * 15 14 4 24 24 H 1.08003 * 120.00357 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.00344 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.00357 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47235 * 3.00450 * 3 2 1 28 28 H 1.09003 * 109.47018 * 243.01100 * 3 2 1 29 29 H 1.08996 * 109.47651 * 186.04265 * 5 4 3 30 30 H 1.08995 * 109.47127 * 306.04933 * 5 4 3 31 31 H 0.97001 * 120.00267 * 179.97438 * 9 8 6 32 32 H 1.08995 * 109.47467 * 168.00849 * 14 4 3 33 33 H 1.09005 * 109.47292 * 48.01135 * 14 4 3 34 34 H 1.08005 * 119.91899 * 0.02562 * 16 15 14 35 35 H 1.07992 * 119.96038 * 179.97438 * 17 16 15 36 36 H 1.07998 * 120.04349 * 180.29615 * 18 17 16 37 37 H 1.09000 * 109.46891 * 59.99771 * 21 20 19 38 38 H 1.09003 * 109.47237 * 300.00456 * 21 20 19 39 39 H 1.08997 * 109.47420 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.47314 * 300.00462 * 22 21 20 41 41 H 1.09008 * 109.46674 * 59.99758 * 22 21 20 42 42 H 1.07994 * 120.03996 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9618 1.3519 1.1614 5 6 3.9789 0.2949 1.0832 6 6 4.8911 0.5611 -0.0865 7 1 4.7314 1.4289 -0.7093 8 6 5.9300 -0.3027 -0.3610 9 7 6.1247 -1.3592 0.3976 10 14 7.0603 0.0268 -1.8114 11 1 6.6309 1.2699 -2.5011 12 1 8.4545 0.1868 -1.3260 13 1 6.9941 -1.1140 -2.7597 14 6 2.2043 1.2617 2.4167 15 6 1.4609 2.5520 2.6487 16 6 2.0803 3.5967 3.3107 17 6 1.4019 4.7822 3.5263 18 6 0.1050 4.9295 3.0752 19 6 -0.5223 3.8803 2.4145 20 16 -2.1794 4.0609 1.8436 21 6 -2.6068 5.7470 2.3583 22 6 -4.0406 6.0636 1.9284 23 6 0.1625 2.6899 2.1999 24 1 -0.5401 0.9353 0.0004 25 1 -0.5401 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3564 2.1329 0.0539 28 1 2.6490 1.3865 -0.9158 29 1 4.5625 0.2834 2.0037 30 1 3.4903 -0.6704 0.9506 31 1 6.8555 -1.9671 0.2043 32 1 2.8916 1.0846 3.2439 33 1 1.4925 0.4386 2.3533 34 1 3.0963 3.4861 3.6601 35 1 1.8886 5.5956 4.0439 36 1 -0.4227 5.8573 3.2397 37 1 -1.9228 6.4544 1.8895 38 1 -2.5260 5.8275 3.4424 39 1 -4.2973 7.0769 2.2373 40 1 -4.1210 5.9832 0.8443 41 1 -4.7250 5.3561 2.3969 42 1 -0.3204 1.8738 1.6832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430111697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:14 Heat of formation + Delta-G solvation = 27.016329 kcal Electronic energy + Delta-G solvation = -20599.052445 eV Core-core repulsion = 17669.820871 eV Total energy + Delta-G solvation = -2929.231574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.49689 -38.59450 -34.94869 -34.13676 -33.75492 -32.44292 -31.87933 -29.05206 -27.71890 -25.68472 -24.76003 -23.35989 -23.08574 -22.02396 -20.46126 -18.45094 -17.92587 -17.32520 -16.85382 -16.70712 -16.47766 -15.89677 -15.74508 -15.49860 -15.46138 -14.86788 -14.59047 -14.16416 -14.02777 -13.77225 -13.32064 -13.23197 -13.03925 -12.87718 -12.66536 -12.60818 -12.48093 -12.35100 -12.20076 -12.09670 -11.91716 -11.67473 -11.26768 -11.06165 -10.62825 -10.61635 -10.29696 -9.77566 -8.97587 -8.33452 -8.19246 -6.28118 0.28506 0.41168 0.57603 1.34375 1.40125 1.40974 1.50895 1.54262 2.40387 2.71425 3.13616 3.52306 3.84544 3.91352 4.00646 4.02786 4.09114 4.12511 4.22698 4.37820 4.42705 4.53304 4.55856 4.65252 4.70169 4.87124 4.88445 4.90961 4.94288 5.05172 5.08459 5.22436 5.23812 5.26780 5.33949 5.48519 5.63123 5.69686 5.73469 5.79492 5.98327 6.08071 6.33158 6.62196 6.87456 7.40885 8.91694 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024302 B = 0.003526 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.907730 B = 7939.843552 C = 8336.418525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.187 4.187 3 C 0.093 3.907 4 N -0.528 5.528 5 C 0.206 3.794 6 C -0.517 4.517 7 H 0.060 0.940 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.265 1.265 12 H -0.278 1.278 13 H -0.280 1.280 14 C 0.090 3.910 15 C -0.056 4.056 16 C -0.117 4.117 17 C -0.099 4.099 18 C -0.138 4.138 19 C -0.092 4.092 20 S -0.153 6.153 21 C -0.102 4.102 22 C -0.135 4.135 23 C -0.109 4.109 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.002 0.998 30 H -0.024 1.024 31 H 0.263 0.737 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.124 0.876 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.468 14.699 5.436 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.207 4.207 3 C -0.035 4.035 4 N -0.250 5.250 5 C 0.080 3.920 6 C -0.555 4.555 7 H 0.078 0.922 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.189 1.189 12 H -0.204 1.204 13 H -0.205 1.205 14 C -0.037 4.037 15 C -0.059 4.059 16 C -0.138 4.138 17 C -0.118 4.118 18 C -0.162 4.162 19 C -0.204 4.204 20 S 0.089 5.911 21 C -0.250 4.250 22 C -0.194 4.194 23 C -0.133 4.133 24 H 0.124 0.876 25 H 0.127 0.873 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.020 0.980 30 H -0.006 1.006 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.142 0.858 35 H 0.170 0.830 36 H 0.164 0.836 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.902 14.295 4.850 24.190 hybrid contribution 1.562 -0.605 0.033 1.676 sum -17.339 13.690 4.884 22.625 Atomic orbital electron populations 1.23924 0.94765 1.02466 1.00218 1.23553 0.97055 0.99668 1.00443 1.21187 0.94068 0.93800 0.94437 1.62304 1.13300 1.48558 1.00846 1.19423 0.89068 0.87524 0.95947 1.21450 1.12519 1.08965 1.12604 0.92229 1.25834 0.99215 0.94792 0.99595 1.70080 1.32157 1.14648 1.40561 0.85398 0.78412 0.78279 0.78932 1.18894 1.20405 1.20534 1.21017 0.95761 0.93757 0.93213 1.19714 0.93338 0.95785 0.97028 1.21241 1.00062 0.93356 0.99128 1.21312 0.94158 0.97437 0.98900 1.21397 0.96213 0.98326 1.00227 1.21760 0.98088 0.97426 1.03129 1.85587 1.09224 1.22078 1.74235 1.23706 1.02518 0.93663 1.05119 1.21544 0.92175 1.03386 1.02291 1.20787 0.94270 0.96982 1.01260 0.87595 0.87303 0.89717 0.90505 0.91578 0.97953 1.00630 0.92769 0.91200 0.94389 0.85799 0.83048 0.83576 0.88705 0.88420 0.88599 0.91893 0.91708 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.28 13.43 67.79 0.91 -4.37 16 2 C -0.19 -7.03 7.43 25.65 0.19 -6.84 16 3 C 0.09 3.75 5.39 85.56 0.46 4.21 16 4 N -0.53 -23.33 4.65 -909.96 -4.23 -27.55 16 5 C 0.21 11.03 4.55 85.56 0.39 11.42 16 6 C -0.52 -29.52 8.47 25.60 0.22 -29.30 16 7 H 0.06 3.38 7.12 -2.91 -0.02 3.36 16 8 C 0.00 0.20 5.46 84.66 0.46 0.66 16 9 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 10 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 11 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 C 0.09 3.41 4.98 85.56 0.43 3.84 16 15 C -0.06 -1.83 4.99 -19.88 -0.10 -1.93 16 16 C -0.12 -3.40 9.71 22.30 0.22 -3.19 16 17 C -0.10 -2.28 10.04 22.25 0.22 -2.06 16 18 C -0.14 -3.05 9.36 22.41 0.21 -2.85 16 19 C -0.09 -2.36 6.11 22.62 0.14 -2.22 16 20 S -0.15 -3.30 21.92 -56.49 -1.24 -4.54 16 21 C -0.10 -1.36 5.05 71.98 0.36 -0.99 16 22 C -0.14 -1.35 9.92 71.98 0.71 -0.63 16 23 C -0.11 -3.27 8.01 22.41 0.18 -3.09 16 24 H 0.11 2.90 6.54 -2.91 -0.02 2.88 16 25 H 0.11 2.85 8.06 -2.91 -0.02 2.83 16 26 H 0.08 3.65 6.81 -2.91 -0.02 3.63 16 27 H 0.08 2.83 6.08 -2.39 -0.01 2.82 16 28 H 0.07 2.95 6.78 -2.39 -0.02 2.93 16 29 H 0.00 0.14 7.86 -2.39 -0.02 0.12 16 30 H -0.02 -1.37 6.31 -2.39 -0.02 -1.38 16 31 H 0.26 14.96 8.31 -92.71 -0.77 14.18 16 32 H 0.07 2.68 7.77 -2.39 -0.02 2.66 16 33 H 0.04 1.43 6.66 -2.38 -0.02 1.42 16 34 H 0.12 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.15 2.32 5.88 -2.91 -0.02 2.30 16 37 H 0.09 1.15 7.74 -2.39 -0.02 1.13 16 38 H 0.10 1.11 7.76 -2.39 -0.02 1.09 16 39 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.12 3.67 5.70 -2.91 -0.02 3.65 16 Total: -1.00 -65.02 349.51 2.84 -62.18 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.99 Total: 16.49 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 5.00 Total: -37.32 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -3.94 Total: -83.67 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -1.24 Total: -4.54 kcal Total: -65.02 2.84 -62.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430111697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.194 kcal (2) G-P(sol) polarization free energy of solvation -65.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds