Wall clock time and date at job start Tue Mar 31 2020 07:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99886 * 2 1 4 4 H 1.48497 * 109.47171 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46845 * 120.00458 * 3 2 1 6 6 H 1.48503 * 109.46868 * 239.99721 * 3 2 1 7 7 C 1.37882 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99790 * 185.79793 * 7 2 1 9 9 C 1.50701 * 119.99953 * 5.79804 * 7 2 1 10 10 C 1.53001 * 115.54827 * 275.21339 * 9 7 2 11 11 N 1.46902 * 109.46885 * 296.66710 * 10 9 7 12 12 C 1.46904 * 110.99898 * 185.43779 * 11 10 9 13 13 C 1.53002 * 109.46646 * 279.04628 * 12 11 10 14 14 C 1.53002 * 109.47284 * 299.99960 * 13 12 11 15 15 C 1.52996 * 109.47096 * 300.00271 * 14 13 12 16 16 C 1.53002 * 109.47096 * 179.97438 * 15 14 13 17 17 F 1.39897 * 109.47093 * 299.99997 * 16 15 14 18 18 F 1.39901 * 109.47042 * 60.00175 * 16 15 14 19 19 F 1.39899 * 109.47032 * 179.97438 * 16 15 14 20 20 C 1.53002 * 109.47275 * 59.99724 * 15 14 13 21 21 C 1.52994 * 109.47442 * 159.04962 * 12 11 10 22 22 C 1.52999 * 117.49920 * 129.53961 * 9 7 2 23 23 C 1.53006 * 117.49941 * 60.87960 * 9 7 2 24 24 H 0.96993 * 119.99913 * 175.13738 * 1 2 3 25 25 H 1.09000 * 109.47654 * 56.66593 * 10 9 7 26 26 H 1.08998 * 109.47230 * 176.67127 * 10 9 7 27 27 H 1.00897 * 111.00379 * 61.48072 * 11 10 9 28 28 H 1.08998 * 109.47598 * 39.04215 * 12 11 10 29 29 H 1.09005 * 109.47158 * 60.00331 * 13 12 11 30 30 H 1.09002 * 109.47015 * 180.02562 * 13 12 11 31 31 H 1.09004 * 109.46993 * 180.02562 * 14 13 12 32 32 H 1.09002 * 109.46793 * 60.00233 * 14 13 12 33 33 H 1.09007 * 109.47009 * 300.00080 * 15 14 13 34 34 H 1.09002 * 109.47334 * 180.02562 * 20 15 14 35 35 H 1.09002 * 109.47015 * 59.99791 * 20 15 14 36 36 H 1.08996 * 109.47779 * 179.97438 * 21 12 11 37 37 H 1.09004 * 109.46879 * 299.99880 * 21 12 11 38 38 H 1.09004 * 117.49633 * 0.02562 * 22 9 7 39 39 H 1.08998 * 117.49490 * 145.01831 * 22 9 7 40 40 H 1.08993 * 117.49667 * 214.97555 * 23 9 7 41 41 H 1.08993 * 117.49750 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0804 -1.1965 0.0939 9 6 1.2568 -2.4958 -0.1330 10 6 0.7008 -3.0729 1.1704 11 7 1.8116 -3.3982 2.0750 12 6 1.3244 -4.0738 3.2851 13 6 0.7890 -3.0324 4.2699 14 6 1.9101 -2.0608 4.6444 15 6 3.0591 -2.8341 5.2944 16 6 4.1804 -1.8626 5.6683 17 9 4.6442 -1.2198 4.5156 18 9 3.6912 -0.9101 6.5687 19 9 5.2309 -2.5696 6.2632 20 6 3.5945 -3.8755 4.3096 21 6 2.4735 -4.8470 3.9352 22 6 1.7441 -3.4858 -1.1928 23 6 0.4395 -2.7145 -1.4078 24 1 -0.4850 -0.8370 -0.0712 25 1 0.0495 -2.3386 1.6443 26 1 0.1319 -3.9771 0.9539 27 1 2.3403 -2.5717 2.3103 28 1 0.5258 -4.7659 3.0184 29 1 -0.0297 -2.4815 3.8068 30 1 0.4280 -3.5336 5.1680 31 1 1.5287 -1.3192 5.3464 32 1 2.2715 -1.5596 3.7465 33 1 2.6976 -3.3353 6.1924 34 1 4.4129 -4.4267 4.7729 35 1 3.9560 -3.3743 3.4117 36 1 2.1122 -5.3479 4.8333 37 1 2.8549 -5.5889 3.2336 38 1 2.6059 -3.1958 -1.7940 39 1 1.6683 -4.5483 -0.9617 40 1 -0.4940 -3.2699 -1.3180 41 1 0.4423 -1.9167 -2.1504 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430745190.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:24 Heat of formation + Delta-G solvation = -172.071048 kcal Electronic energy + Delta-G solvation = -25108.584088 eV Core-core repulsion = 21186.109826 eV Total energy + Delta-G solvation = -3922.474261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 4.23 seconds Orbital eigenvalues (eV) -51.10283 -48.58972 -48.57254 -40.39592 -38.61776 -35.03893 -33.89241 -31.86505 -31.17090 -27.26954 -26.55073 -25.66406 -23.72267 -22.99748 -22.72124 -21.27453 -20.21210 -19.23915 -19.10368 -18.55258 -18.44021 -17.12922 -16.06653 -15.77760 -15.65291 -15.59420 -15.51195 -15.19510 -15.00970 -14.91989 -14.74416 -14.73727 -14.46281 -14.41918 -14.04101 -13.79872 -13.25825 -13.11437 -13.04183 -12.69218 -12.68341 -12.52230 -12.16767 -12.08788 -11.99061 -11.60256 -11.37532 -11.26917 -11.13532 -10.43078 -10.37378 -10.15651 -9.08441 -8.48936 -6.22104 1.52285 1.57489 1.76311 1.80220 2.56645 2.81603 2.99823 3.08215 3.19521 3.27199 3.64161 3.73495 3.80121 3.95425 4.14117 4.22551 4.24829 4.38227 4.40704 4.47015 4.50449 4.56878 4.67849 4.82343 4.85564 4.90059 4.91055 4.99613 5.03868 5.11651 5.15128 5.20936 5.39798 5.44878 5.50389 5.55387 6.22255 6.32885 6.40900 6.67539 6.80183 7.57484 8.90610 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.015042 B = 0.006173 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.057122 B = 4535.021342 C = 5613.382757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.016 4.016 3 Si 1.097 2.903 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.571 4.571 8 H 0.038 0.962 9 C 0.003 3.997 10 C 0.117 3.883 11 N -0.673 5.673 12 C 0.075 3.925 13 C -0.138 4.138 14 C -0.121 4.121 15 C -0.116 4.116 16 C 0.448 3.552 17 F -0.195 7.195 18 F -0.190 7.190 19 F -0.184 7.184 20 C -0.117 4.117 21 C -0.089 4.089 22 C -0.166 4.166 23 C -0.188 4.188 24 H 0.266 0.734 25 H -0.002 1.002 26 H 0.052 0.948 27 H 0.340 0.660 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.585 -9.316 13.380 16.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.216 4.216 3 Si 0.921 3.079 4 H -0.212 1.212 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.609 4.609 8 H 0.056 0.944 9 C 0.002 3.998 10 C -0.013 4.013 11 N -0.306 5.306 12 C -0.035 4.035 13 C -0.177 4.177 14 C -0.158 4.158 15 C -0.136 4.136 16 C 0.394 3.606 17 F -0.176 7.176 18 F -0.172 7.172 19 F -0.166 7.166 20 C -0.155 4.155 21 C -0.127 4.127 22 C -0.203 4.203 23 C -0.226 4.226 24 H 0.077 0.923 25 H 0.017 0.983 26 H 0.070 0.930 27 H 0.161 0.839 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.161 0.839 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.582 -8.235 13.124 16.158 hybrid contribution -0.165 -0.184 -0.040 0.250 sum 4.418 -8.420 13.084 16.174 Atomic orbital electron populations 1.70830 1.07486 1.31089 1.47462 1.26765 0.96663 1.05007 0.93149 0.83169 0.74363 0.72764 0.77562 1.21229 1.20141 1.20231 1.21481 0.93563 0.91378 1.54471 0.94402 1.19196 0.98653 0.94726 0.87192 1.21238 0.91505 0.95571 0.92951 1.60597 1.23298 1.31732 1.14926 1.21789 0.97394 0.95402 0.88888 1.22081 0.96809 0.97609 1.01163 1.21544 0.95372 0.98469 1.00465 1.22512 0.92078 0.95168 1.03800 1.21001 0.84216 0.81369 0.73997 1.93186 1.90247 1.83604 1.50584 1.93153 1.87684 1.67327 1.69031 1.93155 1.60828 1.78211 1.84372 1.21582 0.99604 0.96402 0.97920 1.21413 0.93702 0.96712 1.00833 1.22731 0.96179 0.96576 1.04821 1.22698 0.94482 1.02332 1.03087 0.92337 0.98344 0.92975 0.83911 0.90262 0.93717 0.88414 0.90398 0.93281 0.83915 0.89209 0.92328 0.88727 0.90738 0.91299 0.89077 0.90107 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.85 13.57 21.45 0.29 -54.56 16 2 C -0.02 -0.86 5.39 84.65 0.46 -0.41 16 3 Si 1.10 50.68 29.91 68.60 2.05 52.73 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.57 -31.07 8.26 25.60 0.21 -30.86 16 8 H 0.04 2.12 7.82 -2.91 -0.02 2.10 16 9 C 0.00 0.15 1.15 -52.93 -0.06 0.09 16 10 C 0.12 4.93 5.28 86.30 0.46 5.39 16 11 N -0.67 -24.24 5.81 -491.57 -2.86 -27.10 16 12 C 0.08 2.00 2.86 44.91 0.13 2.12 16 13 C -0.14 -3.47 5.48 30.60 0.17 -3.30 16 14 C -0.12 -3.21 4.70 30.59 0.14 -3.06 16 15 C -0.12 -2.48 2.17 -10.79 -0.02 -2.51 16 16 C 0.45 11.29 2.69 71.98 0.19 11.48 16 17 F -0.19 -6.09 16.28 44.97 0.73 -5.36 16 18 F -0.19 -4.96 16.80 44.97 0.76 -4.21 16 19 F -0.18 -4.37 16.80 44.97 0.76 -3.62 16 20 C -0.12 -2.56 4.71 30.59 0.14 -2.42 16 21 C -0.09 -1.79 5.64 30.59 0.17 -1.62 16 22 C -0.17 -7.15 9.96 30.62 0.30 -6.84 16 23 C -0.19 -8.66 8.65 30.62 0.26 -8.40 16 24 H 0.27 15.63 6.24 -92.71 -0.58 15.05 16 25 H 0.00 -0.08 7.14 -2.39 -0.02 -0.09 16 26 H 0.05 2.02 7.90 -2.39 -0.02 2.00 16 27 H 0.34 13.66 4.95 -89.70 -0.44 13.21 16 28 H 0.08 2.04 7.78 -2.39 -0.02 2.02 16 29 H 0.04 1.38 7.31 -2.38 -0.02 1.36 16 30 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 1.97 7.80 -2.38 -0.02 1.95 16 32 H 0.05 1.68 5.97 -2.39 -0.01 1.67 16 33 H 0.14 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.09 1.63 7.80 -2.39 -0.02 1.61 16 35 H 0.06 1.65 6.76 -2.39 -0.02 1.63 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 39 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 40 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -61.08 330.03 5.07 -56.02 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.78 Total: 26.44 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 2.56 Total: -40.34 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -2.57 Total: -81.66 kcal Atomic # 9 Polarization: -15.43 SS G_CDS: 2.24 Total: -13.18 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.73 kcal Total: -61.08 5.07 -56.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430745190.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.055 kcal (2) G-P(sol) polarization free energy of solvation -61.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.23 seconds