Wall clock time and date at job start Tue Mar 31 2020 06:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.76204 * 102.99779 * 2 1 4 4 C 1.38979 * 120.07955 * 180.02562 * 3 2 1 5 5 C 1.38078 * 119.91828 * 179.97438 * 4 3 2 6 6 C 1.38300 * 120.08282 * 359.97423 * 5 4 3 7 7 C 1.50701 * 119.92390 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46501 * 345.73283 * 7 6 5 9 9 C 1.52990 * 109.47193 * 105.73318 * 7 6 5 10 10 N 1.46895 * 109.47164 * 225.73514 * 7 6 5 11 11 C 1.46903 * 110.99942 * 153.29857 * 10 7 6 12 12 C 1.52999 * 109.47036 * 184.33190 * 11 10 7 13 13 C 1.50698 * 115.54883 * 276.40654 * 12 11 10 14 14 H 1.08009 * 120.00073 * 114.45046 * 13 12 11 15 15 C 1.37874 * 120.00281 * 294.44732 * 13 12 11 16 16 N 1.31519 * 120.00031 * 353.30512 * 15 13 12 17 17 Si 1.86800 * 120.00374 * 173.30597 * 15 13 12 18 18 H 1.48501 * 109.47306 * 89.99785 * 17 15 13 19 19 H 1.48497 * 109.47245 * 210.00422 * 17 15 13 20 20 H 1.48503 * 109.46775 * 329.99883 * 17 15 13 21 21 C 1.53003 * 117.49863 * 130.70028 * 12 11 10 22 22 C 1.52997 * 60.00077 * 252.50764 * 21 12 11 23 23 C 1.38305 * 120.16005 * 0.28209 * 6 5 4 24 24 C 1.38084 * 120.07535 * 359.48459 * 23 6 5 25 25 H 1.09012 * 109.47045 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47602 * 299.99771 * 1 2 3 27 27 H 1.08998 * 109.47272 * 60.00456 * 1 2 3 28 28 H 1.07997 * 120.04032 * 359.95459 * 4 3 2 29 29 H 1.08004 * 119.96108 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47716 * 180.02562 * 9 7 6 31 31 H 1.09001 * 109.47340 * 59.99983 * 9 7 6 32 32 H 1.09007 * 109.47131 * 300.00378 * 9 7 6 33 33 H 1.00903 * 111.00475 * 29.34978 * 10 7 6 34 34 H 1.08999 * 109.47268 * 304.32850 * 11 10 7 35 35 H 1.09002 * 109.47149 * 64.33309 * 11 10 7 36 36 H 0.96992 * 120.00280 * 185.00855 * 16 15 13 37 37 H 1.09002 * 117.49877 * 359.97438 * 21 12 11 38 38 H 1.09000 * 117.49819 * 145.01485 * 21 12 11 39 39 H 1.09003 * 117.50078 * 252.51131 * 22 21 12 40 40 H 1.08998 * 117.51776 * 107.47449 * 22 21 12 41 41 H 1.07997 * 119.96292 * 179.72232 * 23 6 5 42 42 H 1.08007 * 120.03999 * 180.23089 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 3.5387 2.1251 -0.0005 5 6 3.8455 3.4714 -0.0011 6 6 2.8327 4.4132 -0.0016 7 6 3.1716 5.8816 -0.0028 8 1 4.2238 6.0117 0.2502 9 6 2.9049 6.4654 -1.3915 10 7 2.3399 6.5768 0.9886 11 6 3.0095 7.7883 1.4807 12 6 2.1645 8.4247 2.5861 13 6 1.0484 9.3217 2.1161 14 1 0.0202 9.0439 2.2959 15 6 1.3397 10.4969 1.4566 16 7 2.5869 10.9011 1.3531 17 14 -0.0371 11.5151 0.7101 18 1 -0.5312 12.4913 1.7141 19 1 0.4745 12.2434 -0.4786 20 1 -1.1491 10.6198 0.3013 21 6 2.8731 8.8013 3.8888 22 6 1.9236 7.6021 3.8535 23 6 1.5095 4.0107 0.0043 24 6 1.1952 2.6661 0.0000 25 1 -0.3634 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 4.3301 1.3903 -0.0002 29 1 4.8776 3.7894 -0.0011 30 1 3.1504 7.5274 -1.3926 31 1 1.8527 6.3352 -1.6446 32 1 3.5220 5.9495 -2.1272 33 1 2.0972 5.9627 1.7516 34 1 3.9897 7.5256 1.8784 35 1 3.1279 8.4965 0.6606 36 1 2.7861 11.7623 0.9537 37 1 3.9412 8.5953 3.9585 38 1 2.5322 9.6982 4.4060 39 1 0.9580 7.7100 4.3475 40 1 2.3668 6.6074 3.8995 41 1 0.7212 4.7488 0.0084 42 1 0.1617 2.3524 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430752193.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:20 Heat of formation + Delta-G solvation = 43.580404 kcal Electronic energy + Delta-G solvation = -20668.022559 eV Core-core repulsion = 17739.509257 eV Total energy + Delta-G solvation = -2928.513301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.44019 -37.16026 -35.19007 -31.94657 -31.40896 -30.87156 -29.22535 -28.59370 -25.79718 -24.59303 -23.11548 -22.40693 -21.15252 -19.99248 -18.97544 -17.80762 -16.55736 -15.70359 -15.51436 -14.85636 -14.59112 -14.49043 -14.10839 -13.91578 -13.78638 -13.61064 -13.43146 -13.03352 -12.79765 -12.55556 -12.20991 -11.84913 -11.59947 -11.43083 -11.24994 -11.04367 -10.90965 -10.78879 -10.50010 -10.40471 -10.30172 -10.17913 -9.61403 -9.29351 -8.96668 -8.88797 -8.48455 -8.07313 -7.57668 -7.47272 -5.97020 -3.99278 1.17971 1.36841 1.39679 2.23138 3.32856 3.40110 3.44872 3.69369 4.45804 4.67081 4.78532 4.80400 4.85291 4.94828 4.96422 5.26469 5.34113 5.44097 5.48310 5.51542 5.64762 5.73715 5.84754 6.04015 6.11211 6.16955 6.24633 6.27166 6.35518 6.40271 6.54378 6.62778 6.65844 6.72969 6.73668 6.92960 6.97617 7.10235 7.42383 7.66328 7.93254 7.99178 8.17778 8.53022 8.98203 9.63007 11.11544 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.003434 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.756483 B = 8151.425078 C = 8264.320494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.133 6.133 3 C -0.090 4.090 4 C -0.102 4.102 5 C -0.099 4.099 6 C -0.080 4.080 7 C 0.122 3.878 8 H 0.044 0.956 9 C -0.132 4.132 10 N -0.668 5.668 11 C 0.107 3.893 12 C 0.060 3.940 13 C -0.476 4.476 14 H 0.058 0.942 15 C 0.069 3.931 16 N -0.885 5.885 17 Si 0.889 3.111 18 H -0.283 1.283 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.177 4.177 22 C -0.211 4.211 23 C -0.077 4.077 24 C -0.134 4.134 25 H 0.105 0.895 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.332 0.668 34 H -0.003 1.003 35 H 0.088 0.912 36 H 0.259 0.741 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.138 0.862 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 -18.199 -4.080 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.108 5.892 3 C -0.202 4.202 4 C -0.125 4.125 5 C -0.119 4.119 6 C -0.083 4.083 7 C 0.012 3.988 8 H 0.062 0.938 9 C -0.190 4.190 10 N -0.299 5.299 11 C -0.021 4.021 12 C 0.059 3.941 13 C -0.514 4.514 14 H 0.076 0.924 15 C -0.133 4.133 16 N -0.522 5.522 17 Si 0.717 3.283 18 H -0.210 1.210 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.215 4.215 22 C -0.249 4.249 23 C -0.097 4.097 24 C -0.157 4.157 25 H 0.124 0.876 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.150 0.850 34 H 0.015 0.985 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.156 0.844 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.417 -18.789 -4.705 19.374 hybrid contribution -0.761 1.375 0.292 1.599 sum -0.344 -17.414 -4.413 17.967 Atomic orbital electron populations 1.23644 0.94679 1.06863 1.05843 1.85343 1.06610 1.04113 1.93125 1.21624 0.96769 0.95848 1.06000 1.20643 0.94086 0.95922 1.01897 1.21011 0.99204 0.92069 0.99637 1.20203 0.93355 0.95664 0.99085 1.20474 0.95523 0.87709 0.95109 0.93816 1.21752 1.01845 1.01121 0.94269 1.60613 1.43935 1.08042 1.17350 1.21610 0.91638 0.89881 0.98949 1.18837 0.96068 0.95026 0.84187 1.20396 0.91306 1.04081 1.35602 0.92399 1.24923 0.95234 0.97512 0.95597 1.69964 1.17476 1.19957 1.44835 0.86646 0.82580 0.80183 0.78930 1.20962 1.21300 1.19781 1.22754 0.94792 0.97220 1.06735 1.22830 1.00225 0.93926 1.07901 1.21070 0.96771 0.94971 0.96859 1.21171 0.97946 0.93266 1.03365 0.87614 0.89642 0.89726 0.85833 0.85711 0.91826 0.92057 0.93499 0.85022 0.98537 0.89384 0.93162 0.92151 0.90271 0.90569 0.92092 0.84400 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.15 101.05 0.92 -0.12 16 2 S -0.13 -1.38 22.56 -107.50 -2.43 -3.81 16 3 C -0.09 -1.10 6.11 -39.04 -0.24 -1.34 16 4 C -0.10 -1.24 9.79 -39.37 -0.39 -1.63 16 5 C -0.10 -1.26 9.66 -39.62 -0.38 -1.64 16 6 C -0.08 -1.14 4.66 -104.57 -0.49 -1.63 16 7 C 0.12 1.95 2.82 -68.87 -0.19 1.76 16 8 H 0.04 0.71 7.50 -51.93 -0.39 0.32 16 9 C -0.13 -2.07 9.37 37.15 0.35 -1.72 16 10 N -0.67 -12.67 5.88 -107.96 -0.64 -13.30 16 11 C 0.11 2.40 5.39 -3.82 -0.02 2.38 16 12 C 0.06 1.44 1.50 -155.66 -0.23 1.21 16 13 C -0.48 -12.85 8.83 -34.44 -0.30 -13.16 16 14 H 0.06 1.58 7.82 -52.48 -0.41 1.17 16 15 C 0.07 1.88 5.25 -17.82 -0.09 1.79 16 16 N -0.88 -24.74 12.55 55.43 0.70 -24.05 16 17 Si 0.89 21.14 29.55 -169.99 -5.02 16.12 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.18 -4.11 9.88 -26.73 -0.26 -4.38 16 22 C -0.21 -4.54 9.39 -26.73 -0.25 -4.80 16 23 C -0.08 -1.06 8.99 -39.61 -0.36 -1.41 16 24 C -0.13 -1.65 9.36 -39.37 -0.37 -2.02 16 25 H 0.11 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.08 0.61 7.75 -51.92 -0.40 0.21 16 27 H 0.08 0.59 7.75 -51.92 -0.40 0.18 16 28 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.12 1.39 7.99 -52.48 -0.42 0.97 16 30 H 0.06 1.11 7.65 -51.93 -0.40 0.71 16 31 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 32 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.33 6.12 7.16 -39.29 -0.28 5.84 16 34 H 0.00 -0.08 7.72 -51.93 -0.40 -0.48 16 35 H 0.09 2.22 6.76 -51.93 -0.35 1.87 16 36 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 37 H 0.06 1.33 8.06 -51.93 -0.42 0.91 16 38 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 39 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 40 H 0.06 1.19 7.81 -51.93 -0.41 0.78 16 41 H 0.14 1.97 7.88 -52.49 -0.41 1.55 16 42 H 0.12 1.26 5.88 -52.48 -0.31 0.95 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -28.05 356.79 -10.99 -39.04 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.67 Total: 7.34 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -2.31 Total: -26.72 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.06 Total: -37.35 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -2.43 Total: -3.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.05 -10.99 -39.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430752193.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.618 kcal (2) G-P(sol) polarization free energy of solvation -28.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds