Wall clock time and date at job start Tue Mar 31 2020 06:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.76204 * 102.99779 * 2 1 4 4 C 1.38979 * 120.07955 * 180.02562 * 3 2 1 5 5 C 1.38078 * 119.91828 * 179.97438 * 4 3 2 6 6 C 1.38300 * 120.08282 * 359.97423 * 5 4 3 7 7 C 1.50701 * 119.92390 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46501 * 345.73283 * 7 6 5 9 9 C 1.52990 * 109.47193 * 105.73318 * 7 6 5 10 10 N 1.46895 * 109.47164 * 225.73514 * 7 6 5 11 11 C 1.46903 * 110.99942 * 153.29857 * 10 7 6 12 12 C 1.52999 * 109.47036 * 184.33190 * 11 10 7 13 13 C 1.50698 * 115.54883 * 276.40654 * 12 11 10 14 14 H 1.08009 * 120.00073 * 114.45046 * 13 12 11 15 15 C 1.37874 * 120.00281 * 294.44732 * 13 12 11 16 16 N 1.31519 * 120.00031 * 353.30512 * 15 13 12 17 17 Si 1.86800 * 120.00374 * 173.30597 * 15 13 12 18 18 H 1.48501 * 109.47306 * 89.99785 * 17 15 13 19 19 H 1.48497 * 109.47245 * 210.00422 * 17 15 13 20 20 H 1.48503 * 109.46775 * 329.99883 * 17 15 13 21 21 C 1.53003 * 117.49863 * 130.70028 * 12 11 10 22 22 C 1.52997 * 60.00077 * 252.50764 * 21 12 11 23 23 C 1.38305 * 120.16005 * 0.28209 * 6 5 4 24 24 C 1.38084 * 120.07535 * 359.48459 * 23 6 5 25 25 H 1.09012 * 109.47045 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47602 * 299.99771 * 1 2 3 27 27 H 1.08998 * 109.47272 * 60.00456 * 1 2 3 28 28 H 1.07997 * 120.04032 * 359.95459 * 4 3 2 29 29 H 1.08004 * 119.96108 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47716 * 180.02562 * 9 7 6 31 31 H 1.09001 * 109.47340 * 59.99983 * 9 7 6 32 32 H 1.09007 * 109.47131 * 300.00378 * 9 7 6 33 33 H 1.00903 * 111.00475 * 29.34978 * 10 7 6 34 34 H 1.08999 * 109.47268 * 304.32850 * 11 10 7 35 35 H 1.09002 * 109.47149 * 64.33309 * 11 10 7 36 36 H 0.96992 * 120.00280 * 185.00855 * 16 15 13 37 37 H 1.09002 * 117.49877 * 359.97438 * 21 12 11 38 38 H 1.09000 * 117.49819 * 145.01485 * 21 12 11 39 39 H 1.09003 * 117.50078 * 252.51131 * 22 21 12 40 40 H 1.08998 * 117.51776 * 107.47449 * 22 21 12 41 41 H 1.07997 * 119.96292 * 179.72232 * 23 6 5 42 42 H 1.08007 * 120.03999 * 180.23089 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 3.5387 2.1251 -0.0005 5 6 3.8455 3.4714 -0.0011 6 6 2.8327 4.4132 -0.0016 7 6 3.1716 5.8816 -0.0028 8 1 4.2238 6.0117 0.2502 9 6 2.9049 6.4654 -1.3915 10 7 2.3399 6.5768 0.9886 11 6 3.0095 7.7883 1.4807 12 6 2.1645 8.4247 2.5861 13 6 1.0484 9.3217 2.1161 14 1 0.0202 9.0439 2.2959 15 6 1.3397 10.4969 1.4566 16 7 2.5869 10.9011 1.3531 17 14 -0.0371 11.5151 0.7101 18 1 -0.5312 12.4913 1.7141 19 1 0.4745 12.2434 -0.4786 20 1 -1.1491 10.6198 0.3013 21 6 2.8731 8.8013 3.8888 22 6 1.9236 7.6021 3.8535 23 6 1.5095 4.0107 0.0043 24 6 1.1952 2.6661 0.0000 25 1 -0.3634 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 4.3301 1.3903 -0.0002 29 1 4.8776 3.7894 -0.0011 30 1 3.1504 7.5274 -1.3926 31 1 1.8527 6.3352 -1.6446 32 1 3.5220 5.9495 -2.1272 33 1 2.0972 5.9627 1.7516 34 1 3.9897 7.5256 1.8784 35 1 3.1279 8.4965 0.6606 36 1 2.7861 11.7623 0.9537 37 1 3.9412 8.5953 3.9585 38 1 2.5322 9.6982 4.4060 39 1 0.9580 7.7100 4.3475 40 1 2.3668 6.6074 3.8995 41 1 0.7212 4.7488 0.0084 42 1 0.1617 2.3524 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430752193.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:19 Heat of formation + Delta-G solvation = 30.333789 kcal Electronic energy + Delta-G solvation = -20668.596975 eV Core-core repulsion = 17739.509257 eV Total energy + Delta-G solvation = -2929.087718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.50604 -38.83613 -36.61984 -34.00287 -32.49472 -32.00385 -30.15287 -29.52865 -27.75374 -26.24923 -24.28148 -23.44386 -22.92457 -21.23769 -20.86360 -18.75533 -18.20903 -17.10927 -16.67630 -16.50534 -16.03514 -15.60719 -15.29016 -15.12939 -15.02354 -14.71847 -14.59145 -14.44930 -13.84982 -13.65736 -13.47093 -13.24524 -13.15224 -12.90005 -12.79288 -12.74424 -12.38217 -12.33014 -12.19711 -12.02680 -11.70590 -11.25574 -11.13452 -10.85079 -10.53203 -10.43046 -9.96766 -9.92844 -9.11617 -8.33154 -8.04239 -6.11556 0.18831 0.42682 0.60279 1.42250 1.45360 1.48320 1.54560 2.47008 2.69232 3.18514 3.29478 3.67412 3.76564 3.90104 4.01697 4.26719 4.27513 4.30103 4.36475 4.44499 4.53021 4.58320 4.59984 4.71451 4.78096 4.80792 4.86805 4.88140 4.96474 5.01051 5.07934 5.16741 5.26270 5.29073 5.32158 5.39102 5.59004 5.67535 5.72073 5.93613 5.95616 6.37026 6.47224 6.72239 6.90590 7.53074 9.03567 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.003434 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.756483 B = 8151.425078 C = 8264.320494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.145 6.145 3 C -0.094 4.094 4 C -0.107 4.107 5 C -0.099 4.099 6 C -0.093 4.093 7 C 0.125 3.875 8 H 0.043 0.957 9 C -0.127 4.127 10 N -0.671 5.671 11 C 0.125 3.875 12 C 0.033 3.967 13 C -0.491 4.491 14 H 0.047 0.953 15 C 0.027 3.973 16 N -0.909 5.909 17 Si 0.945 3.055 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.271 1.271 21 C -0.184 4.184 22 C -0.184 4.184 23 C -0.086 4.086 24 C -0.136 4.136 25 H 0.126 0.874 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.336 0.664 34 H -0.002 1.002 35 H 0.053 0.947 36 H 0.258 0.742 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.127 0.873 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 -20.324 -4.260 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.097 5.903 3 C -0.207 4.207 4 C -0.130 4.130 5 C -0.119 4.119 6 C -0.096 4.096 7 C 0.016 3.984 8 H 0.061 0.939 9 C -0.185 4.185 10 N -0.303 5.303 11 C -0.004 4.004 12 C 0.032 3.968 13 C -0.529 4.529 14 H 0.066 0.934 15 C -0.173 4.173 16 N -0.548 5.548 17 Si 0.771 3.229 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.196 1.196 21 C -0.222 4.222 22 C -0.221 4.221 23 C -0.106 4.106 24 C -0.159 4.159 25 H 0.145 0.855 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.158 0.842 29 H 0.157 0.843 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.155 0.845 34 H 0.016 0.984 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.145 0.855 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.173 -20.933 -4.880 21.495 hybrid contribution -0.617 1.922 0.352 2.049 sum -0.790 -19.011 -4.528 19.559 Atomic orbital electron populations 1.23769 0.91979 1.08452 1.06397 1.85405 1.09633 1.02522 1.92759 1.21877 0.96868 0.97033 1.04910 1.20891 0.94716 0.96000 1.01399 1.21157 0.99563 0.92146 0.99059 1.19998 0.94020 0.94430 1.01115 1.20437 0.94948 0.88974 0.94080 0.93861 1.21703 1.01958 0.99791 0.95029 1.60495 1.44451 1.07574 1.17739 1.21208 0.91617 0.90458 0.97094 1.18926 0.96292 0.96249 0.85346 1.20646 0.91652 1.04806 1.35785 0.93445 1.25547 0.97120 0.98613 0.95997 1.70063 1.18917 1.20213 1.45605 0.85762 0.80173 0.78794 0.78144 1.20500 1.21153 1.19553 1.22695 0.95671 0.97600 1.06233 1.22818 0.99772 0.94349 1.05171 1.21031 0.96358 0.95566 0.97620 1.21341 0.99053 0.92617 1.02922 0.85528 0.89182 0.89054 0.84218 0.84334 0.94289 0.92555 0.91173 0.84540 0.98400 0.92809 0.93301 0.91169 0.92093 0.90458 0.89541 0.85481 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.15 113.37 1.04 -0.59 16 2 S -0.14 -2.66 22.56 -56.49 -1.27 -3.94 16 3 C -0.09 -2.11 6.11 22.62 0.14 -1.98 16 4 C -0.11 -2.38 9.79 22.41 0.22 -2.16 16 5 C -0.10 -2.35 9.66 22.25 0.21 -2.14 16 6 C -0.09 -2.53 4.66 -19.83 -0.09 -2.62 16 7 C 0.13 3.97 2.82 44.17 0.12 4.09 16 8 H 0.04 1.38 7.50 -2.39 -0.02 1.36 16 9 C -0.13 -4.00 9.37 71.98 0.67 -3.32 16 10 N -0.67 -25.41 5.88 -495.46 -2.92 -28.33 16 11 C 0.13 5.66 5.39 86.30 0.47 6.12 16 12 C 0.03 1.58 1.50 -52.93 -0.08 1.50 16 13 C -0.49 -26.83 8.83 25.60 0.23 -26.61 16 14 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 15 C 0.03 1.47 5.25 84.65 0.44 1.91 16 16 N -0.91 -51.84 12.55 21.45 0.27 -51.57 16 17 Si 0.94 43.87 29.55 68.60 2.03 45.90 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 21 C -0.18 -8.53 9.88 30.59 0.30 -8.23 16 22 C -0.18 -7.69 9.39 30.59 0.29 -7.40 16 23 C -0.09 -2.27 8.99 22.25 0.20 -2.07 16 24 C -0.14 -3.10 9.36 22.41 0.21 -2.89 16 25 H 0.13 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.09 1.02 7.75 -2.39 -0.02 1.00 16 27 H 0.09 0.99 7.75 -2.39 -0.02 0.97 16 28 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 29 H 0.14 2.82 7.99 -2.91 -0.02 2.80 16 30 H 0.04 1.39 7.65 -2.39 -0.02 1.37 16 31 H 0.06 1.80 8.09 -2.39 -0.02 1.78 16 32 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.34 12.14 7.16 -89.69 -0.64 11.50 16 34 H 0.00 -0.09 7.72 -2.39 -0.02 -0.11 16 35 H 0.05 2.80 6.76 -2.39 -0.02 2.78 16 36 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 37 H 0.07 3.07 8.06 -2.39 -0.02 3.05 16 38 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 39 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.09 3.16 7.81 -2.39 -0.02 3.15 16 41 H 0.13 3.59 7.88 -2.91 -0.02 3.57 16 42 H 0.14 2.56 5.88 -2.91 -0.02 2.55 16 Total: -1.00 -59.91 356.79 2.83 -57.07 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.36 Total: 27.24 kcal Atomic # 6 Polarization: -50.74 SS G_CDS: 4.37 Total: -46.37 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -2.65 Total: -79.90 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -1.27 Total: -3.94 kcal Total: -59.91 2.83 -57.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430752193.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.408 kcal (2) G-P(sol) polarization free energy of solvation -59.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds