Wall clock time and date at job start Tue Mar 31 2020 06:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46734 * 2 1 4 4 C 1.50701 * 109.46929 * 239.99959 * 2 1 3 5 5 H 1.08001 * 119.99777 * 239.99591 * 4 2 1 6 6 C 1.37873 * 120.00156 * 60.00167 * 4 2 1 7 7 N 1.31515 * 120.00348 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00128 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47087 * 89.99711 * 8 6 4 10 10 H 1.48504 * 109.47231 * 210.00207 * 8 6 4 11 11 H 1.48500 * 109.47121 * 329.99882 * 8 6 4 12 12 S 1.81398 * 109.47006 * 119.99861 * 2 1 3 13 13 C 1.76196 * 103.00070 * 289.52427 * 12 2 1 14 14 C 1.38729 * 120.10346 * 354.35601 * 13 12 2 15 15 C 1.38245 * 119.99536 * 180.32030 * 14 13 12 16 16 C 1.38269 * 120.19469 * 359.68304 * 15 14 13 17 17 C 1.38289 * 120.20610 * 359.97438 * 16 15 14 18 18 C 1.38638 * 120.00285 * 0.05230 * 17 16 15 19 19 N 1.40004 * 120.09598 * 179.97438 * 18 17 16 20 20 C 1.46495 * 120.00199 * 359.97438 * 19 18 17 21 21 C 1.52998 * 109.47136 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.47366 * 180.02562 * 21 20 19 23 23 C 1.53000 * 117.49584 * 243.62474 * 22 21 20 24 24 C 1.52994 * 117.50264 * 175.00060 * 22 21 20 25 25 H 1.08999 * 109.47066 * 53.73512 * 1 2 3 26 26 H 1.09001 * 109.46894 * 173.72895 * 1 2 3 27 27 H 1.09002 * 109.47183 * 293.72947 * 1 2 3 28 28 H 0.96995 * 120.00450 * 180.02562 * 7 6 4 29 29 H 1.07998 * 120.00288 * 0.02755 * 14 13 12 30 30 H 1.08001 * 119.90382 * 179.70438 * 15 14 13 31 31 H 1.08006 * 119.89431 * 180.02562 * 16 15 14 32 32 H 1.07994 * 119.99475 * 180.02562 * 17 16 15 33 33 H 0.97008 * 119.99367 * 179.97438 * 19 18 17 34 34 H 1.09001 * 109.46743 * 60.00610 * 20 19 18 35 35 H 1.08996 * 109.47260 * 300.00003 * 20 19 18 36 36 H 1.08994 * 109.47445 * 59.99829 * 21 20 19 37 37 H 1.09005 * 109.47258 * 300.00046 * 21 20 19 38 38 H 1.08999 * 115.54956 * 29.32494 * 22 21 20 39 39 H 1.08999 * 117.50186 * 359.97438 * 23 22 21 40 40 H 1.08999 * 117.50198 * 145.01995 * 23 22 21 41 41 H 1.09000 * 117.49987 * 214.97441 * 24 22 21 42 42 H 1.09004 * 117.49661 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6035 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7566 -3.7120 12 16 2.1347 -0.8551 1.4811 13 6 1.7258 0.2638 2.7794 14 6 1.1967 1.5112 2.4821 15 6 0.8829 2.3899 3.5022 16 6 1.0887 2.0270 4.8204 17 6 1.6090 0.7829 5.1265 18 6 1.9272 -0.1046 4.1100 19 7 2.4547 -1.3645 4.4177 20 6 2.6717 -1.7465 5.8152 21 6 3.2519 -3.1610 5.8731 22 6 3.4780 -3.5602 7.3327 23 6 4.9181 -3.8207 7.7789 24 6 3.9462 -4.9901 7.6097 25 1 -0.3633 0.6079 -0.8286 26 1 -0.3633 -1.0215 -0.1123 27 1 -0.3634 0.4136 0.9408 28 1 0.7082 1.1608 -3.4844 29 1 1.0344 1.7978 1.4535 30 1 0.4755 3.3625 3.2688 31 1 0.8414 2.7171 5.6136 32 1 1.7680 0.5028 6.1573 33 1 2.6764 -1.9845 3.7053 34 1 1.7225 -1.7206 6.3504 35 1 3.3692 -1.0488 6.2784 36 1 4.2011 -3.1865 5.3379 37 1 2.5547 -3.8590 5.4097 38 1 2.8018 -3.1032 8.0552 39 1 5.7045 -3.7080 7.0325 40 1 5.1897 -3.5350 8.7951 41 1 3.5784 -5.4738 8.5146 42 1 4.0928 -5.6467 6.7520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438299096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:04 Heat of formation + Delta-G solvation = 33.809349 kcal Electronic energy + Delta-G solvation = -20133.885711 eV Core-core repulsion = 17204.948705 eV Total energy + Delta-G solvation = -2928.937006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.00613 -37.92526 -35.42613 -34.08324 -31.15420 -30.99127 -29.81709 -27.73731 -25.32150 -23.89482 -22.63421 -22.28510 -21.42692 -20.82264 -20.61023 -17.61340 -16.35071 -16.16095 -15.87151 -15.59875 -15.01185 -14.93480 -14.40591 -14.03980 -13.63140 -13.41649 -13.32981 -12.95966 -12.57800 -12.07116 -11.91786 -11.83533 -11.74234 -11.63560 -11.53345 -11.08400 -11.00436 -10.88659 -10.55281 -10.50261 -10.37915 -10.18158 -9.93016 -9.76206 -9.37679 -8.97891 -8.84252 -8.48022 -7.41805 -6.26992 -6.19125 -4.27601 1.79829 2.03720 2.63466 3.23408 3.29766 3.34480 3.47869 3.60588 3.82882 4.27355 4.31862 4.48108 4.61800 4.66390 4.96067 5.13150 5.14062 5.25498 5.33277 5.37419 5.43883 5.45595 5.63482 5.67886 5.76702 5.83908 5.93059 5.94198 6.04908 6.14034 6.36681 6.58696 6.63945 6.78600 6.80149 6.84112 7.03855 7.23918 7.38496 7.63431 7.66277 7.80135 8.01155 8.03876 8.71134 9.36156 10.87217 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.003768 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.099419 B = 7429.414192 C = 8949.569308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.510 4.510 5 H 0.066 0.934 6 C 0.071 3.929 7 N -0.887 5.887 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 S -0.185 6.185 13 C -0.132 4.132 14 C -0.088 4.088 15 C -0.161 4.161 16 C -0.095 4.095 17 C -0.190 4.190 18 C 0.222 3.778 19 N -0.747 5.747 20 C 0.133 3.867 21 C -0.102 4.102 22 C -0.148 4.148 23 C -0.181 4.181 24 C -0.181 4.181 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.020 0.980 28 H 0.265 0.735 29 H 0.132 0.868 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.404 0.596 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.684 -4.114 18.127 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 H 0.068 0.932 4 C -0.550 4.550 5 H 0.084 0.916 6 C -0.133 4.133 7 N -0.524 5.524 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 S 0.060 5.940 13 C -0.249 4.249 14 C -0.113 4.113 15 C -0.183 4.183 16 C -0.116 4.116 17 C -0.215 4.215 18 C 0.115 3.885 19 N -0.379 5.379 20 C 0.008 3.992 21 C -0.139 4.139 22 C -0.167 4.167 23 C -0.218 4.218 24 C -0.218 4.218 25 H 0.108 0.892 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.150 0.850 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.240 0.760 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.205 -5.171 18.135 19.128 hybrid contribution -0.288 0.624 -1.102 1.299 sum 2.917 -4.547 17.032 17.868 Atomic orbital electron populations 1.22086 0.96369 1.01367 0.99997 1.21026 0.95488 0.97223 0.88777 0.93223 1.20647 1.32489 1.13145 0.88710 0.91577 1.24885 0.94700 0.94935 0.98827 1.69878 1.35954 1.22527 1.24057 0.86369 0.79392 0.79275 0.81732 1.20394 1.20968 1.19619 1.84867 1.76385 1.30972 1.01742 1.21431 1.08841 0.99412 0.95233 1.21238 0.97646 0.92205 1.00215 1.20793 1.05122 0.99785 0.92598 1.20751 0.99120 0.95621 0.96132 1.20407 1.08706 0.95176 0.97198 1.17305 0.94092 0.85792 0.91338 1.44722 1.71463 1.15067 1.06690 1.21193 0.99481 0.95016 0.83479 1.21344 1.01865 0.96212 0.94521 1.22174 0.97927 0.99304 0.97298 1.23060 0.93002 1.03144 1.02574 1.22971 1.04257 0.91230 1.03322 0.89237 0.94106 0.96145 0.92483 0.84989 0.86749 0.86832 0.86642 0.75978 0.92638 0.92543 0.91052 0.90800 0.87583 0.88682 0.88907 0.88852 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.38 37.16 0.31 -3.02 16 2 C 0.10 2.56 1.97 -27.88 -0.06 2.50 16 3 H 0.05 1.33 6.83 -51.92 -0.35 0.97 16 4 C -0.51 -13.86 8.58 -34.44 -0.30 -14.16 16 5 H 0.07 1.81 7.71 -52.49 -0.40 1.40 16 6 C 0.07 1.90 5.30 -17.82 -0.09 1.80 16 7 N -0.89 -24.41 11.39 55.43 0.63 -23.78 16 8 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 12 S -0.19 -4.06 19.75 -107.50 -2.12 -6.18 16 13 C -0.13 -2.63 5.99 -38.92 -0.23 -2.86 16 14 C -0.09 -1.71 8.06 -39.40 -0.32 -2.03 16 15 C -0.16 -2.65 10.04 -39.57 -0.40 -3.05 16 16 C -0.09 -1.40 10.04 -39.55 -0.40 -1.79 16 17 C -0.19 -2.89 9.31 -39.41 -0.37 -3.26 16 18 C 0.22 3.85 6.66 -83.50 -0.56 3.29 16 19 N -0.75 -11.18 5.68 -58.45 -0.33 -11.51 16 20 C 0.13 1.50 4.88 -4.05 -0.02 1.48 16 21 C -0.10 -0.98 5.61 -26.73 -0.15 -1.13 16 22 C -0.15 -1.22 5.74 -90.62 -0.52 -1.74 16 23 C -0.18 -1.38 10.18 -26.73 -0.27 -1.66 16 24 C -0.18 -1.37 10.25 -26.73 -0.27 -1.64 16 25 H 0.09 2.31 6.26 -51.93 -0.33 1.98 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.02 0.44 6.17 -51.93 -0.32 0.12 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.13 2.75 4.99 -52.49 -0.26 2.49 16 30 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.12 1.47 6.74 -52.49 -0.35 1.11 16 33 H 0.40 6.33 7.02 -40.82 -0.29 6.04 16 34 H 0.06 0.60 7.95 -51.93 -0.41 0.19 16 35 H 0.06 0.62 7.95 -51.93 -0.41 0.21 16 36 H 0.07 0.71 7.88 -51.93 -0.41 0.30 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.11 0.80 8.07 -51.93 -0.42 0.39 16 39 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 349.39 15.07 5.27 5.27 Total: -1.00 -27.97 349.39 -11.69 -39.66 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.47 Total: 7.97 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: -3.64 Total: -27.26 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.30 Total: -35.29 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -4.06 SS G_CDS: -2.12 Total: -6.18 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.97 -11.69 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438299096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.471 kcal (2) G-P(sol) polarization free energy of solvation -27.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds