Wall clock time and date at job start Tue Mar 31 2020 06:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46734 * 2 1 4 4 C 1.50701 * 109.46929 * 239.99959 * 2 1 3 5 5 H 1.08001 * 119.99777 * 239.99591 * 4 2 1 6 6 C 1.37873 * 120.00156 * 60.00167 * 4 2 1 7 7 N 1.31515 * 120.00348 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00128 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47087 * 89.99711 * 8 6 4 10 10 H 1.48504 * 109.47231 * 210.00207 * 8 6 4 11 11 H 1.48500 * 109.47121 * 329.99882 * 8 6 4 12 12 S 1.81398 * 109.47006 * 119.99861 * 2 1 3 13 13 C 1.76196 * 103.00070 * 289.52427 * 12 2 1 14 14 C 1.38729 * 120.10346 * 354.35601 * 13 12 2 15 15 C 1.38245 * 119.99536 * 180.32030 * 14 13 12 16 16 C 1.38269 * 120.19469 * 359.68304 * 15 14 13 17 17 C 1.38289 * 120.20610 * 359.97438 * 16 15 14 18 18 C 1.38638 * 120.00285 * 0.05230 * 17 16 15 19 19 N 1.40004 * 120.09598 * 179.97438 * 18 17 16 20 20 C 1.46495 * 120.00199 * 359.97438 * 19 18 17 21 21 C 1.52998 * 109.47136 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.47366 * 180.02562 * 21 20 19 23 23 C 1.53000 * 117.49584 * 243.62474 * 22 21 20 24 24 C 1.52994 * 117.50264 * 175.00060 * 22 21 20 25 25 H 1.08999 * 109.47066 * 53.73512 * 1 2 3 26 26 H 1.09001 * 109.46894 * 173.72895 * 1 2 3 27 27 H 1.09002 * 109.47183 * 293.72947 * 1 2 3 28 28 H 0.96995 * 120.00450 * 180.02562 * 7 6 4 29 29 H 1.07998 * 120.00288 * 0.02755 * 14 13 12 30 30 H 1.08001 * 119.90382 * 179.70438 * 15 14 13 31 31 H 1.08006 * 119.89431 * 180.02562 * 16 15 14 32 32 H 1.07994 * 119.99475 * 180.02562 * 17 16 15 33 33 H 0.97008 * 119.99367 * 179.97438 * 19 18 17 34 34 H 1.09001 * 109.46743 * 60.00610 * 20 19 18 35 35 H 1.08996 * 109.47260 * 300.00003 * 20 19 18 36 36 H 1.08994 * 109.47445 * 59.99829 * 21 20 19 37 37 H 1.09005 * 109.47258 * 300.00046 * 21 20 19 38 38 H 1.08999 * 115.54956 * 29.32494 * 22 21 20 39 39 H 1.08999 * 117.50186 * 359.97438 * 23 22 21 40 40 H 1.08999 * 117.50198 * 145.01995 * 23 22 21 41 41 H 1.09000 * 117.49987 * 214.97441 * 24 22 21 42 42 H 1.09004 * 117.49661 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6035 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7566 -3.7120 12 16 2.1347 -0.8551 1.4811 13 6 1.7258 0.2638 2.7794 14 6 1.1967 1.5112 2.4821 15 6 0.8829 2.3899 3.5022 16 6 1.0887 2.0270 4.8204 17 6 1.6090 0.7829 5.1265 18 6 1.9272 -0.1046 4.1100 19 7 2.4547 -1.3645 4.4177 20 6 2.6717 -1.7465 5.8152 21 6 3.2519 -3.1610 5.8731 22 6 3.4780 -3.5602 7.3327 23 6 4.9181 -3.8207 7.7789 24 6 3.9462 -4.9901 7.6097 25 1 -0.3633 0.6079 -0.8286 26 1 -0.3633 -1.0215 -0.1123 27 1 -0.3634 0.4136 0.9408 28 1 0.7082 1.1608 -3.4844 29 1 1.0344 1.7978 1.4535 30 1 0.4755 3.3625 3.2688 31 1 0.8414 2.7171 5.6136 32 1 1.7680 0.5028 6.1573 33 1 2.6764 -1.9845 3.7053 34 1 1.7225 -1.7206 6.3504 35 1 3.3692 -1.0488 6.2784 36 1 4.2011 -3.1865 5.3379 37 1 2.5547 -3.8590 5.4097 38 1 2.8018 -3.1032 8.0552 39 1 5.7045 -3.7080 7.0325 40 1 5.1897 -3.5350 8.7951 41 1 3.5784 -5.4738 8.5146 42 1 4.0928 -5.6467 6.7520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438299096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:03 Heat of formation + Delta-G solvation = 21.393534 kcal Electronic energy + Delta-G solvation = -20134.424101 eV Core-core repulsion = 17204.948705 eV Total energy + Delta-G solvation = -2929.475396 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.24239 -38.65748 -36.59821 -36.00836 -32.76117 -32.19694 -31.38666 -28.86663 -27.38623 -24.92858 -23.65519 -23.26451 -23.13574 -22.09363 -21.36659 -19.12873 -18.04754 -17.49215 -17.25069 -16.67897 -16.39129 -15.91458 -15.72964 -15.21104 -15.12196 -14.91906 -14.46679 -14.31033 -14.17801 -13.73198 -13.23370 -13.03432 -12.88998 -12.85224 -12.68010 -12.50828 -12.43712 -12.32981 -12.26416 -12.07658 -11.56833 -11.34294 -11.14087 -11.00748 -10.78970 -10.74689 -10.51389 -10.36142 -8.76983 -8.25089 -7.81192 -6.41462 0.45510 0.72698 1.00004 1.40541 1.40911 1.52659 1.96155 2.37189 2.54526 2.92310 2.95733 3.04590 3.73995 3.97581 4.01193 4.03628 4.24545 4.27051 4.35296 4.52302 4.55482 4.58741 4.61802 4.67835 4.78835 4.81906 4.82463 4.84940 4.99479 5.06667 5.07291 5.11564 5.28448 5.30859 5.33100 5.38565 5.51456 5.57024 5.71681 5.74988 5.99202 6.00849 6.47656 6.60936 6.74416 7.25808 8.81202 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.003768 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.099419 B = 7429.414192 C = 8949.569308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.102 3.898 3 H 0.021 0.979 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.026 3.974 7 N -0.910 5.910 8 Si 0.969 3.031 9 H -0.271 1.271 10 H -0.277 1.277 11 H -0.269 1.269 12 S -0.192 6.192 13 C -0.165 4.165 14 C -0.107 4.107 15 C -0.169 4.169 16 C -0.077 4.077 17 C -0.187 4.187 18 C 0.219 3.781 19 N -0.749 5.749 20 C 0.132 3.868 21 C -0.096 4.096 22 C -0.152 4.152 23 C -0.181 4.181 24 C -0.181 4.181 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.269 0.731 29 H 0.104 0.896 30 H 0.134 0.866 31 H 0.156 0.844 32 H 0.149 0.851 33 H 0.397 0.603 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 -4.248 20.661 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.026 4.026 3 H 0.039 0.961 4 C -0.574 4.574 5 H 0.076 0.924 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.793 3.207 9 H -0.196 1.196 10 H -0.202 1.202 11 H -0.194 1.194 12 S 0.052 5.948 13 C -0.282 4.282 14 C -0.132 4.132 15 C -0.191 4.191 16 C -0.098 4.098 17 C -0.211 4.211 18 C 0.110 3.890 19 N -0.380 5.380 20 C 0.009 3.991 21 C -0.133 4.133 22 C -0.171 4.171 23 C -0.218 4.218 24 C -0.218 4.218 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.152 0.848 31 H 0.174 0.826 32 H 0.167 0.833 33 H 0.232 0.768 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.135 0.865 39 H 0.108 0.892 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.349 -5.303 20.708 21.637 hybrid contribution -0.325 0.713 -1.716 1.887 sum 3.024 -4.590 18.992 19.771 Atomic orbital electron populations 1.21866 0.95990 1.00346 0.99799 1.20742 0.95744 0.95846 0.90263 0.96138 1.20918 1.32974 1.13302 0.90170 0.92393 1.25701 0.94689 0.95556 1.01607 1.69989 1.36507 1.23481 1.24844 0.85389 0.78901 0.78326 0.78094 1.19632 1.20187 1.19355 1.84565 1.77207 1.31600 1.01393 1.21423 1.11938 0.99468 0.95392 1.21161 0.99062 0.93082 0.99857 1.21055 1.05099 1.00113 0.92834 1.21236 0.96474 0.95874 0.96234 1.20829 1.07432 0.94751 0.98130 1.17542 0.93775 0.86997 0.90687 1.44951 1.70700 1.14181 1.08143 1.21394 1.00354 0.95953 0.81399 1.21267 1.01188 0.95241 0.95653 1.22154 0.98619 0.99967 0.96344 1.23122 0.92581 1.03033 1.03077 1.23045 1.04041 0.91023 1.03711 0.91270 0.94835 0.94821 0.92218 0.87774 0.84768 0.82627 0.83347 0.76815 0.91447 0.91620 0.91791 0.91402 0.86492 0.89175 0.87735 0.87675 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.07 8.38 71.98 0.60 -5.46 16 2 C 0.10 5.37 1.97 29.85 0.06 5.43 16 3 H 0.02 1.18 6.83 -2.39 -0.02 1.17 16 4 C -0.53 -30.14 8.58 25.60 0.22 -29.92 16 5 H 0.06 3.28 7.71 -2.91 -0.02 3.26 16 6 C 0.03 1.44 5.30 84.65 0.45 1.89 16 7 N -0.91 -51.58 11.39 21.45 0.24 -51.34 16 8 Si 0.97 43.35 29.54 68.60 2.03 45.37 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 S -0.19 -8.73 19.75 -56.49 -1.12 -9.84 16 13 C -0.17 -6.66 5.99 22.70 0.14 -6.52 16 14 C -0.11 -4.23 8.06 22.39 0.18 -4.05 16 15 C -0.17 -5.30 10.04 22.28 0.22 -5.07 16 16 C -0.08 -1.99 10.04 22.29 0.22 -1.76 16 17 C -0.19 -5.04 9.31 22.38 0.21 -4.83 16 18 C 0.22 7.27 6.66 38.24 0.25 7.53 16 19 N -0.75 -21.55 5.68 -338.84 -1.93 -23.48 16 20 C 0.13 2.66 4.88 86.38 0.42 3.08 16 21 C -0.10 -1.70 5.61 30.59 0.17 -1.53 16 22 C -0.15 -2.16 5.74 -10.80 -0.06 -2.22 16 23 C -0.18 -2.41 10.18 30.59 0.31 -2.10 16 24 C -0.18 -2.40 10.25 30.59 0.31 -2.08 16 25 H 0.07 3.74 6.26 -2.39 -0.01 3.72 16 26 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.03 1.55 6.17 -2.39 -0.01 1.53 16 28 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.10 4.63 4.99 -2.91 -0.01 4.61 16 30 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 31 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.15 3.02 6.74 -2.91 -0.02 3.00 16 33 H 0.40 12.41 7.02 -92.70 -0.65 11.76 16 34 H 0.07 1.23 7.95 -2.39 -0.02 1.21 16 35 H 0.07 1.23 7.95 -2.39 -0.02 1.21 16 36 H 0.06 1.22 7.88 -2.39 -0.02 1.20 16 37 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.12 1.42 8.07 -2.39 -0.02 1.40 16 39 H 0.09 1.28 8.03 -2.39 -0.02 1.26 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.26 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -62.10 349.39 3.30 -58.80 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.36 Total: 28.10 kcal Atomic # 6 Polarization: -51.33 SS G_CDS: 3.71 Total: -47.61 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -1.68 Total: -74.82 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.12 Total: -9.84 kcal Total: -62.10 3.30 -58.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438299096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.196 kcal (2) G-P(sol) polarization free energy of solvation -62.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds