Wall clock time and date at job start Tue Mar 31 2020 06:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76192 * 103.00063 * 2 1 4 4 C 1.38999 * 120.08318 * 0.02562 * 3 2 1 5 5 C 1.38055 * 119.92498 * 179.97438 * 4 3 2 6 6 C 1.38332 * 120.07882 * 0.02562 * 5 4 3 7 7 C 1.38283 * 120.15612 * 359.97438 * 6 5 4 8 8 C 1.38101 * 120.08539 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.04190 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47252 * 146.45839 * 9 8 7 11 11 C 1.53007 * 109.47281 * 266.45443 * 9 8 7 12 12 N 1.46904 * 109.47422 * 26.45489 * 9 8 7 13 13 C 1.46899 * 111.00106 * 154.40074 * 12 9 8 14 14 C 1.52998 * 109.46883 * 185.36028 * 13 12 9 15 15 C 1.50706 * 115.54645 * 276.43487 * 14 13 12 16 16 H 1.08000 * 119.99992 * 114.54732 * 15 14 13 17 17 C 1.37873 * 119.99848 * 294.54197 * 15 14 13 18 18 N 1.31511 * 120.00356 * 353.76465 * 17 15 14 19 19 Si 1.86806 * 119.99828 * 173.75663 * 17 15 14 20 20 H 1.48508 * 109.46782 * 90.00491 * 19 17 15 21 21 H 1.48496 * 109.47047 * 210.00133 * 19 17 15 22 22 H 1.48495 * 109.47058 * 330.00555 * 19 17 15 23 23 C 1.52998 * 117.50103 * 130.72705 * 14 13 12 24 24 C 1.52996 * 117.50279 * 62.10269 * 14 13 12 25 25 H 1.08996 * 109.47058 * 59.99873 * 1 2 3 26 26 H 1.09006 * 109.47286 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47070 * 300.00261 * 1 2 3 28 28 H 1.08007 * 120.03683 * 0.02562 * 4 3 2 29 29 H 1.07992 * 119.96459 * 180.27824 * 5 4 3 30 30 H 1.07996 * 119.92154 * 180.02562 * 6 5 4 31 31 H 1.08001 * 119.95793 * 179.97438 * 7 6 5 32 32 H 1.09006 * 109.47169 * 180.02562 * 11 9 8 33 33 H 1.08994 * 109.46740 * 300.00145 * 11 9 8 34 34 H 1.09000 * 109.46654 * 60.00029 * 11 9 8 35 35 H 1.00902 * 110.99995 * 278.35433 * 12 9 8 36 36 H 1.09006 * 109.47079 * 305.35396 * 13 12 9 37 37 H 1.08993 * 109.47112 * 65.35910 * 13 12 9 38 38 H 0.96998 * 120.00218 * 185.01876 * 18 17 15 39 39 H 1.08998 * 117.49732 * 359.97438 * 23 14 13 40 40 H 1.09000 * 117.49865 * 145.01748 * 23 14 13 41 41 H 1.09003 * 117.50448 * 214.98204 * 24 14 13 42 42 H 1.09003 * 117.49961 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 0.0005 5 6 1.5095 4.0105 0.0011 6 6 2.8329 4.4131 0.0005 7 6 3.8455 3.4714 0.0000 8 6 3.5386 2.1249 0.0005 9 6 4.6429 1.0995 -0.0006 10 1 4.3270 0.2246 0.5677 11 6 4.9543 0.6868 -1.4407 12 7 5.8463 1.6749 0.6149 13 6 6.7015 0.6238 1.1819 14 6 7.8725 1.2664 1.9281 15 6 9.0495 1.6612 1.0736 16 1 9.3107 2.7032 0.9625 17 6 9.7927 0.6921 0.4338 18 7 9.5530 -0.5801 0.6652 19 14 11.1403 1.1862 -0.7618 20 1 12.4232 1.3336 -0.0283 21 1 11.2843 0.1395 -1.8054 22 1 10.7848 2.4780 -1.4020 23 6 8.1629 0.7722 3.3466 24 6 7.5428 2.1540 3.1298 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.1617 2.3526 0.0014 29 1 0.7213 4.7487 0.0060 30 1 3.0759 5.4654 0.0014 31 1 4.8777 3.7893 -0.0008 32 1 5.7527 -0.0553 -1.4415 33 1 4.0614 0.2598 -1.8974 34 1 5.2702 1.5616 -2.0090 35 1 6.3573 2.2384 -0.0480 36 1 6.1193 0.0158 1.8745 37 1 7.0841 -0.0059 0.3788 38 1 10.1221 -1.2602 0.2723 39 1 7.5195 -0.0104 3.7485 40 1 9.2055 0.7324 3.6621 41 1 8.1773 3.0233 3.3028 42 1 6.4915 2.2805 3.3887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442873096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:33 Heat of formation + Delta-G solvation = 44.928357 kcal Electronic energy + Delta-G solvation = -21024.444196 eV Core-core repulsion = 18095.989346 eV Total energy + Delta-G solvation = -2928.454850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -39.29316 -37.04911 -35.24681 -31.96567 -31.22101 -30.98340 -28.93431 -28.50484 -25.68531 -24.44159 -23.10563 -22.45694 -20.96227 -20.12413 -19.02926 -17.52795 -16.22185 -15.83026 -15.35812 -14.70021 -14.62935 -14.29955 -14.06395 -13.94252 -13.86057 -13.51762 -13.23995 -13.07040 -12.55012 -12.45893 -12.18621 -11.86443 -11.52721 -11.32857 -11.18320 -10.94920 -10.91586 -10.84535 -10.79006 -10.40111 -10.07884 -9.98998 -9.61032 -9.29541 -8.79268 -8.61484 -8.44874 -8.04252 -7.50708 -7.32164 -6.00889 -4.05984 1.33802 1.50725 1.54204 2.42640 3.28451 3.36197 3.39082 3.83315 4.40752 4.70512 4.89105 4.89784 4.91382 5.07952 5.18681 5.24995 5.42540 5.48606 5.58782 5.60493 5.65864 5.68641 5.91209 6.01074 6.17036 6.21503 6.27432 6.37889 6.49336 6.58087 6.61778 6.67248 6.73148 6.93873 6.98179 7.02104 7.06650 7.21146 7.56109 7.61672 7.91378 8.00450 8.25516 8.52857 8.95808 9.57906 11.06525 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019483 B = 0.004213 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.778432 B = 6644.988785 C = 6831.751679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.110 6.110 3 C -0.089 4.089 4 C -0.138 4.138 5 C -0.114 4.114 6 C -0.126 4.126 7 C -0.077 4.077 8 C -0.037 4.037 9 C 0.118 3.882 10 H 0.085 0.915 11 C -0.174 4.174 12 N -0.675 5.675 13 C 0.107 3.893 14 C 0.053 3.947 15 C -0.492 4.492 16 H 0.058 0.942 17 C 0.070 3.930 18 N -0.879 5.879 19 Si 0.885 3.115 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.178 4.178 24 C -0.193 4.193 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.343 0.657 36 H 0.038 0.962 37 H 0.048 0.952 38 H 0.259 0.741 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.436 3.895 -3.201 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.132 5.868 3 C -0.202 4.202 4 C -0.162 4.162 5 C -0.134 4.134 6 C -0.147 4.147 7 C -0.097 4.097 8 C -0.043 4.043 9 C 0.007 3.993 10 H 0.103 0.897 11 C -0.233 4.233 12 N -0.306 5.306 13 C -0.021 4.021 14 C 0.052 3.948 15 C -0.530 4.530 16 H 0.076 0.924 17 C -0.132 4.132 18 N -0.516 5.516 19 Si 0.713 3.287 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.216 4.216 24 C -0.230 4.230 25 H 0.099 0.901 26 H 0.123 0.877 27 H 0.100 0.900 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.154 0.846 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.162 0.838 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.085 2.744 -2.707 17.514 hybrid contribution 0.287 0.874 -1.303 1.595 sum -16.798 3.618 -4.010 17.645 Atomic orbital electron populations 1.23690 0.96346 1.06693 1.05266 1.85667 1.04775 1.03721 1.92599 1.21550 0.96127 0.96135 1.06351 1.20997 0.97600 0.93273 1.04288 1.20928 0.96586 0.95015 1.00877 1.21200 0.92756 0.99586 1.01136 1.21054 1.00053 0.91664 0.96939 1.19654 0.91552 0.95111 0.97946 1.20411 0.90456 0.94317 0.94133 0.89671 1.22435 1.01995 1.01952 0.96928 1.60617 1.07838 1.24097 1.38028 1.21457 0.91560 0.91419 0.97682 1.18757 0.93595 0.96521 0.85877 1.20539 1.11823 0.92801 1.27862 0.92353 1.24975 0.96989 0.94948 0.96331 1.69977 1.38021 0.99432 1.44173 0.86700 0.82407 0.78305 0.81283 1.20745 1.21292 1.19791 1.22714 0.99180 0.95111 1.04622 1.22714 0.98533 0.93616 1.08175 0.90080 0.87726 0.90046 0.86445 0.86367 0.86110 0.84635 0.91657 0.92267 0.92565 0.83814 0.94334 0.93337 0.93082 0.92192 0.90661 0.91231 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.15 101.05 0.92 -0.37 16 2 S -0.11 -1.40 20.63 -107.50 -2.22 -3.62 16 3 C -0.09 -1.25 6.11 -39.03 -0.24 -1.49 16 4 C -0.14 -1.68 9.36 -39.37 -0.37 -2.05 16 5 C -0.11 -1.32 10.04 -39.61 -0.40 -1.72 16 6 C -0.13 -1.58 10.04 -39.53 -0.40 -1.98 16 7 C -0.08 -1.13 9.32 -39.62 -0.37 -1.50 16 8 C -0.04 -0.57 5.07 -104.41 -0.53 -1.10 16 9 C 0.12 1.99 2.29 -68.86 -0.16 1.83 16 10 H 0.09 1.54 6.51 -51.93 -0.34 1.20 16 11 C -0.17 -2.78 9.15 37.16 0.34 -2.44 16 12 N -0.68 -12.98 5.18 -107.95 -0.56 -13.54 16 13 C 0.11 2.42 5.33 -3.83 -0.02 2.40 16 14 C 0.05 1.30 1.49 -155.66 -0.23 1.07 16 15 C -0.49 -13.11 8.83 -34.44 -0.30 -13.41 16 16 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 17 C 0.07 1.89 5.25 -17.82 -0.09 1.80 16 18 N -0.88 -24.51 12.52 55.43 0.69 -23.82 16 19 Si 0.89 20.76 29.55 -169.99 -5.02 15.74 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 23 C -0.18 -4.25 9.88 -26.73 -0.26 -4.51 16 24 C -0.19 -4.33 9.87 -26.73 -0.26 -4.59 16 25 H 0.08 0.62 7.75 -51.93 -0.40 0.21 16 26 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 27 H 0.08 0.64 7.75 -51.93 -0.40 0.24 16 28 H 0.12 1.16 5.88 -52.48 -0.31 0.85 16 29 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.14 2.01 6.93 -52.49 -0.36 1.65 16 32 H 0.06 1.13 7.60 -51.93 -0.39 0.74 16 33 H 0.06 0.87 7.93 -51.93 -0.41 0.46 16 34 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 35 H 0.34 6.69 7.95 -39.29 -0.31 6.38 16 36 H 0.04 0.87 7.69 -51.93 -0.40 0.47 16 37 H 0.05 1.21 6.68 -51.93 -0.35 0.87 16 38 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 39 H 0.06 1.37 8.06 -51.93 -0.42 0.95 16 40 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 41 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 LS Contribution 354.05 15.07 5.34 5.34 Total: -1.00 -28.05 354.05 -10.74 -38.80 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.60 Total: 9.16 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: -2.37 Total: -28.05 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.14 Total: -37.36 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.22 Total: -3.62 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.05 -10.74 -38.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442873096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.726 kcal (2) G-P(sol) polarization free energy of solvation -28.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds