Wall clock time and date at job start Tue Mar 31 2020 06:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76192 * 103.00063 * 2 1 4 4 C 1.38999 * 120.08318 * 0.02562 * 3 2 1 5 5 C 1.38055 * 119.92498 * 179.97438 * 4 3 2 6 6 C 1.38332 * 120.07882 * 0.02562 * 5 4 3 7 7 C 1.38283 * 120.15612 * 359.97438 * 6 5 4 8 8 C 1.38101 * 120.08539 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.04190 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47252 * 146.45839 * 9 8 7 11 11 C 1.53007 * 109.47281 * 266.45443 * 9 8 7 12 12 N 1.46904 * 109.47422 * 26.45489 * 9 8 7 13 13 C 1.46899 * 111.00106 * 154.40074 * 12 9 8 14 14 C 1.52998 * 109.46883 * 185.36028 * 13 12 9 15 15 C 1.50706 * 115.54645 * 276.43487 * 14 13 12 16 16 H 1.08000 * 119.99992 * 114.54732 * 15 14 13 17 17 C 1.37873 * 119.99848 * 294.54197 * 15 14 13 18 18 N 1.31511 * 120.00356 * 353.76465 * 17 15 14 19 19 Si 1.86806 * 119.99828 * 173.75663 * 17 15 14 20 20 H 1.48508 * 109.46782 * 90.00491 * 19 17 15 21 21 H 1.48496 * 109.47047 * 210.00133 * 19 17 15 22 22 H 1.48495 * 109.47058 * 330.00555 * 19 17 15 23 23 C 1.52998 * 117.50103 * 130.72705 * 14 13 12 24 24 C 1.52996 * 117.50279 * 62.10269 * 14 13 12 25 25 H 1.08996 * 109.47058 * 59.99873 * 1 2 3 26 26 H 1.09006 * 109.47286 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47070 * 300.00261 * 1 2 3 28 28 H 1.08007 * 120.03683 * 0.02562 * 4 3 2 29 29 H 1.07992 * 119.96459 * 180.27824 * 5 4 3 30 30 H 1.07996 * 119.92154 * 180.02562 * 6 5 4 31 31 H 1.08001 * 119.95793 * 179.97438 * 7 6 5 32 32 H 1.09006 * 109.47169 * 180.02562 * 11 9 8 33 33 H 1.08994 * 109.46740 * 300.00145 * 11 9 8 34 34 H 1.09000 * 109.46654 * 60.00029 * 11 9 8 35 35 H 1.00902 * 110.99995 * 278.35433 * 12 9 8 36 36 H 1.09006 * 109.47079 * 305.35396 * 13 12 9 37 37 H 1.08993 * 109.47112 * 65.35910 * 13 12 9 38 38 H 0.96998 * 120.00218 * 185.01876 * 18 17 15 39 39 H 1.08998 * 117.49732 * 359.97438 * 23 14 13 40 40 H 1.09000 * 117.49865 * 145.01748 * 23 14 13 41 41 H 1.09003 * 117.50448 * 214.98204 * 24 14 13 42 42 H 1.09003 * 117.49961 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 0.0005 5 6 1.5095 4.0105 0.0011 6 6 2.8329 4.4131 0.0005 7 6 3.8455 3.4714 0.0000 8 6 3.5386 2.1249 0.0005 9 6 4.6429 1.0995 -0.0006 10 1 4.3270 0.2246 0.5677 11 6 4.9543 0.6868 -1.4407 12 7 5.8463 1.6749 0.6149 13 6 6.7015 0.6238 1.1819 14 6 7.8725 1.2664 1.9281 15 6 9.0495 1.6612 1.0736 16 1 9.3107 2.7032 0.9625 17 6 9.7927 0.6921 0.4338 18 7 9.5530 -0.5801 0.6652 19 14 11.1403 1.1862 -0.7618 20 1 12.4232 1.3336 -0.0283 21 1 11.2843 0.1395 -1.8054 22 1 10.7848 2.4780 -1.4020 23 6 8.1629 0.7722 3.3466 24 6 7.5428 2.1540 3.1298 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.1617 2.3526 0.0014 29 1 0.7213 4.7487 0.0060 30 1 3.0759 5.4654 0.0014 31 1 4.8777 3.7893 -0.0008 32 1 5.7527 -0.0553 -1.4415 33 1 4.0614 0.2598 -1.8974 34 1 5.2702 1.5616 -2.0090 35 1 6.3573 2.2384 -0.0480 36 1 6.1193 0.0158 1.8745 37 1 7.0841 -0.0059 0.3788 38 1 10.1221 -1.2602 0.2723 39 1 7.5195 -0.0104 3.7485 40 1 9.2055 0.7324 3.6621 41 1 8.1773 3.0233 3.3028 42 1 6.4915 2.2805 3.3887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000442873096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:32 Heat of formation + Delta-G solvation = 31.633512 kcal Electronic energy + Delta-G solvation = -21025.020704 eV Core-core repulsion = 18095.989346 eV Total energy + Delta-G solvation = -2929.031358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.39044 -38.75714 -36.74682 -34.02968 -32.35332 -32.11455 -29.85858 -29.58778 -27.68977 -26.10114 -24.30618 -23.52984 -22.83071 -21.38357 -20.92645 -18.61700 -17.93582 -17.03181 -16.66545 -16.54774 -15.96902 -15.72486 -15.42703 -14.96731 -14.81650 -14.77514 -14.52142 -14.41659 -14.03166 -13.54281 -13.30336 -13.24912 -13.09937 -12.98470 -12.90399 -12.71233 -12.46596 -12.30034 -12.12504 -11.96354 -11.88017 -11.21984 -10.93779 -10.78152 -10.58198 -10.42585 -9.97368 -9.64850 -9.13626 -8.32061 -8.07164 -6.17861 0.34146 0.50777 0.64919 1.41130 1.43870 1.52677 1.57744 2.43702 2.81996 3.15987 3.27102 3.75632 3.87432 4.02259 4.17512 4.26607 4.28973 4.29933 4.32653 4.40277 4.53549 4.61136 4.66042 4.73869 4.79776 4.83117 4.89925 4.92001 5.05923 5.06834 5.08327 5.17268 5.22456 5.29739 5.41573 5.61884 5.65945 5.66200 5.70230 5.87719 6.07618 6.35719 6.47704 6.61962 6.90863 7.48728 8.99716 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019483 B = 0.004213 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.778432 B = 6644.988785 C = 6831.751679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.163 6.163 3 C -0.096 4.096 4 C -0.138 4.138 5 C -0.108 4.108 6 C -0.128 4.128 7 C -0.095 4.095 8 C -0.060 4.060 9 C 0.124 3.876 10 H 0.070 0.930 11 C -0.164 4.164 12 N -0.668 5.668 13 C 0.126 3.874 14 C 0.031 3.969 15 C -0.504 4.504 16 H 0.053 0.947 17 C 0.028 3.972 18 N -0.907 5.907 19 Si 0.945 3.055 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.185 4.185 24 C -0.168 4.168 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.092 0.908 28 H 0.144 0.856 29 H 0.153 0.847 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.341 0.659 36 H 0.032 0.968 37 H 0.018 0.982 38 H 0.259 0.741 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.680 5.490 -3.665 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.079 5.921 3 C -0.208 4.208 4 C -0.162 4.162 5 C -0.127 4.127 6 C -0.149 4.149 7 C -0.114 4.114 8 C -0.066 4.066 9 C 0.014 3.986 10 H 0.088 0.912 11 C -0.223 4.223 12 N -0.298 5.298 13 C -0.003 4.003 14 C 0.030 3.970 15 C -0.542 4.542 16 H 0.071 0.929 17 C -0.172 4.172 18 N -0.545 5.545 19 Si 0.771 3.229 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.223 4.223 24 C -0.205 4.205 25 H 0.114 0.886 26 H 0.139 0.861 27 H 0.110 0.890 28 H 0.162 0.838 29 H 0.170 0.830 30 H 0.161 0.839 31 H 0.143 0.857 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.159 0.841 36 H 0.050 0.950 37 H 0.036 0.964 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.339 4.353 -3.168 20.074 hybrid contribution 0.866 0.390 -1.137 1.481 sum -18.473 4.743 -4.304 19.552 Atomic orbital electron populations 1.23768 0.91969 1.08225 1.06450 1.85843 1.09628 1.03963 1.92645 1.21655 0.95981 0.96796 1.06415 1.21373 0.98416 0.93262 1.03146 1.21353 0.97003 0.95517 0.98869 1.21480 0.92785 1.00305 1.00284 1.21086 1.00341 0.91886 0.98135 1.19505 0.91689 0.94947 1.00492 1.20319 0.89881 0.94513 0.93906 0.91204 1.22317 1.01691 1.01461 0.96842 1.60583 1.07729 1.22973 1.38473 1.21098 0.91291 0.91536 0.96419 1.18889 0.93901 0.97932 0.86258 1.20761 1.12555 0.92559 1.28312 0.92906 1.25620 0.99094 0.94872 0.97656 1.70090 1.38948 1.00251 1.45192 0.85751 0.79792 0.78103 0.79216 1.20516 1.21285 1.19014 1.22666 0.98607 0.96505 1.04543 1.22658 0.99104 0.92795 1.05951 0.88647 0.86058 0.88959 0.83808 0.82971 0.83868 0.85729 0.93840 0.91045 0.92141 0.84111 0.94981 0.96420 0.93233 0.91543 0.92187 0.90831 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.15 113.37 1.04 -0.89 16 2 S -0.16 -4.04 20.63 -56.49 -1.17 -5.20 16 3 C -0.10 -2.57 6.11 22.62 0.14 -2.43 16 4 C -0.14 -2.95 9.36 22.41 0.21 -2.74 16 5 C -0.11 -2.11 10.04 22.25 0.22 -1.88 16 6 C -0.13 -2.89 10.04 22.30 0.22 -2.67 16 7 C -0.09 -2.70 9.32 22.25 0.21 -2.49 16 8 C -0.06 -1.85 5.07 -19.73 -0.10 -1.95 16 9 C 0.12 4.32 2.29 44.17 0.10 4.42 16 10 H 0.07 2.63 6.51 -2.39 -0.02 2.62 16 11 C -0.16 -5.42 9.15 71.98 0.66 -4.76 16 12 N -0.67 -26.35 5.18 -495.44 -2.56 -28.91 16 13 C 0.13 5.88 5.33 86.30 0.46 6.34 16 14 C 0.03 1.54 1.49 -52.93 -0.08 1.46 16 15 C -0.50 -27.22 8.83 25.60 0.23 -26.99 16 16 H 0.05 2.85 7.82 -2.91 -0.02 2.82 16 17 C 0.03 1.51 5.25 84.65 0.44 1.96 16 18 N -0.91 -51.76 12.52 21.45 0.27 -51.49 16 19 Si 0.95 43.06 29.55 68.60 2.03 45.09 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 C -0.18 -8.94 9.88 30.59 0.30 -8.64 16 24 C -0.17 -7.47 9.87 30.59 0.30 -7.17 16 25 H 0.09 1.11 7.75 -2.39 -0.02 1.09 16 26 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 1.14 7.75 -2.39 -0.02 1.12 16 28 H 0.14 2.23 5.88 -2.91 -0.02 2.21 16 29 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.12 3.72 6.93 -2.91 -0.02 3.70 16 32 H 0.04 1.59 7.60 -2.38 -0.02 1.57 16 33 H 0.07 2.14 7.93 -2.39 -0.02 2.12 16 34 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16 35 H 0.34 13.68 7.95 -89.69 -0.71 12.97 16 36 H 0.03 1.50 7.69 -2.38 -0.02 1.49 16 37 H 0.02 0.92 6.68 -2.39 -0.02 0.91 16 38 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 39 H 0.07 3.07 8.06 -2.39 -0.02 3.06 16 40 H 0.06 3.04 8.14 -2.39 -0.02 3.03 16 41 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -60.96 354.05 3.21 -57.75 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.29 Total: 31.21 kcal Atomic # 6 Polarization: -52.80 SS G_CDS: 4.36 Total: -48.45 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -2.30 Total: -80.41 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: -4.04 SS G_CDS: -1.17 Total: -5.20 kcal Total: -60.96 3.21 -57.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442873096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.384 kcal (2) G-P(sol) polarization free energy of solvation -60.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds