Wall clock time and date at job start Tue Mar 31 2020 08:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86806 * 119.99998 * 2 1 4 4 H 1.48497 * 109.47159 * 240.00267 * 3 2 1 5 5 H 1.48501 * 109.46750 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47147 * 120.00058 * 3 2 1 7 7 C 1.39946 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00169 * 197.84218 * 7 2 1 9 9 C 1.41395 * 119.99710 * 17.84661 * 7 2 1 10 10 C 1.40719 * 120.24018 * 204.37867 * 9 7 2 11 11 C 1.37615 * 119.74302 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24802 * 0.02864 * 11 10 9 13 13 C 1.50705 * 119.74941 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.46958 * 89.99894 * 13 12 11 15 15 C 1.46905 * 110.99794 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.47074 * 325.00350 * 15 14 13 17 17 C 1.53003 * 109.47273 * 84.99983 * 15 14 13 18 18 O 1.42899 * 109.46937 * 65.00046 * 17 15 14 19 19 C 1.52997 * 109.47312 * 205.00189 * 15 14 13 20 20 H 1.09006 * 110.27376 * 54.29579 * 19 15 14 21 21 C 1.54945 * 110.31494 * 176.39008 * 19 15 14 22 22 C 1.55408 * 100.89615 * 155.28646 * 21 19 15 23 23 C 1.54378 * 102.30888 * 325.99235 * 22 21 19 24 24 O 1.43236 * 107.59293 * 21.28413 * 23 22 21 25 25 C 1.38631 * 120.50623 * 0.25023 * 12 11 10 26 26 C 1.37621 * 120.24293 * 359.44556 * 25 12 11 27 27 H 0.96999 * 120.00306 * 359.97438 * 1 2 3 28 28 H 1.08006 * 120.12856 * 0.02562 * 10 9 7 29 29 H 1.08006 * 119.87771 * 180.02562 * 11 10 9 30 30 H 1.09007 * 109.46992 * 330.00107 * 13 12 11 31 31 H 1.09003 * 109.46984 * 210.00420 * 13 12 11 32 32 H 1.00902 * 111.00114 * 56.05579 * 14 13 12 33 33 H 1.08996 * 109.47048 * 184.99591 * 17 15 14 34 34 H 1.09001 * 109.47216 * 305.00309 * 17 15 14 35 35 H 0.96696 * 114.00109 * 180.02562 * 18 17 15 36 36 H 1.09004 * 111.12472 * 273.28208 * 21 19 15 37 37 H 1.09004 * 111.12225 * 37.43842 * 21 19 15 38 38 H 1.08999 * 110.88194 * 207.75670 * 22 21 19 39 39 H 1.09003 * 110.93257 * 84.25055 * 22 21 19 40 40 H 1.09003 * 109.83353 * 261.76914 * 23 22 21 41 41 H 1.09004 * 109.90462 * 140.84071 * 23 22 21 42 42 H 1.07997 * 119.88398 * 179.70686 * 25 12 11 43 43 H 1.08003 * 120.12771 * 180.27494 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0491 -1.2346 0.2860 9 6 1.3520 -2.4068 -0.3764 10 6 1.8260 -3.6499 0.0823 11 6 1.1800 -4.8065 -0.2903 12 6 0.0668 -4.7502 -1.1146 13 6 -0.6316 -6.0238 -1.5161 14 7 -1.6775 -6.3392 -0.5339 15 6 -2.3808 -7.5779 -0.8933 16 1 -2.4566 -7.6510 -1.9783 17 6 -1.6037 -8.7805 -0.3542 18 8 -1.6041 -8.7464 1.0743 19 6 -3.7841 -7.5628 -0.2840 20 1 -4.3147 -6.6577 -0.5799 21 6 -4.5760 -8.8192 -0.7258 22 6 -5.6019 -8.9430 0.4350 23 6 -4.7875 -8.4456 1.6485 24 8 -3.7069 -7.6498 1.1478 25 6 -0.4054 -3.5316 -1.5771 26 6 0.2210 -2.3618 -1.2123 27 1 -0.4850 0.8400 0.0004 28 1 2.6933 -3.6961 0.7242 29 1 1.5416 -5.7617 0.0609 30 1 0.0912 -6.8389 -1.5516 31 1 -1.0835 -5.8958 -2.4997 32 1 -2.3245 -5.5713 -0.4354 33 1 -2.0764 -9.7013 -0.6958 34 1 -0.5769 -8.7425 -0.7182 35 1 -1.1279 -9.4808 1.4855 36 1 -5.0774 -8.6524 -1.6792 37 1 -3.9289 -9.6951 -0.7723 38 1 -5.9094 -9.9796 0.5728 39 1 -6.4671 -8.3034 0.2600 40 1 -4.3935 -9.2970 2.2035 41 1 -5.4211 -7.8420 2.2984 42 1 -1.2706 -3.4997 -2.2226 43 1 -0.1511 -1.4131 -1.5701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447905269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:59 Heat of formation + Delta-G solvation = -75.327074 kcal Electronic energy + Delta-G solvation = -23160.486570 eV Core-core repulsion = 19784.064182 eV Total energy + Delta-G solvation = -3376.422388 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -39.68682 -37.71906 -36.65871 -35.02599 -33.55085 -32.09737 -31.12170 -29.31775 -29.04876 -27.08979 -25.97117 -23.74336 -22.46336 -21.59223 -20.90854 -19.96500 -19.70452 -17.32501 -17.22228 -16.65261 -16.24341 -15.40093 -15.17263 -14.59216 -14.35099 -14.13839 -13.75197 -13.66507 -13.39658 -13.06178 -12.87577 -12.78243 -12.38657 -11.87808 -11.79727 -11.66861 -11.60582 -11.33296 -11.20642 -11.09510 -10.96955 -10.89007 -10.56926 -10.40086 -10.27837 -9.64782 -9.49017 -9.31843 -9.16020 -9.06802 -7.87174 -7.36776 -7.21259 -6.70021 -4.28276 2.81171 3.09421 3.12291 3.16632 3.24418 3.84460 3.97400 4.33955 4.41079 4.58234 4.70678 4.80047 4.88195 5.02371 5.16494 5.23242 5.43038 5.49870 5.56042 5.61265 5.67495 5.79307 5.79663 5.84890 5.88095 5.94642 6.00982 6.09202 6.34928 6.44916 6.51110 7.01745 7.13871 7.25781 7.35415 7.45743 7.54724 7.69095 7.86580 7.97151 8.02805 8.12234 8.22583 8.38057 8.70904 8.96434 9.05419 10.24481 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027878 B = 0.003111 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.136781 B = 8998.674706 C = 9345.915897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.112 3.888 10 C -0.228 4.228 11 C -0.066 4.066 12 C -0.211 4.211 13 C 0.124 3.876 14 N -0.662 5.662 15 C 0.085 3.915 16 H 0.058 0.942 17 C 0.094 3.906 18 O -0.526 6.526 19 C 0.085 3.915 20 H 0.064 0.936 21 C -0.152 4.152 22 C -0.155 4.155 23 C 0.051 3.949 24 O -0.330 6.330 25 C -0.096 4.096 26 C -0.166 4.166 27 H 0.280 0.720 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.015 0.985 32 H 0.343 0.657 33 H 0.032 0.968 34 H 0.040 0.960 35 H 0.356 0.644 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.181 -15.753 -2.399 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.110 3.890 10 C -0.248 4.248 11 C -0.085 4.085 12 C -0.213 4.213 13 C -0.004 4.004 14 N -0.294 5.294 15 C -0.025 4.025 16 H 0.076 0.924 17 C 0.015 3.985 18 O -0.327 6.327 19 C 0.026 3.974 20 H 0.082 0.918 21 C -0.190 4.190 22 C -0.193 4.193 23 C -0.027 4.027 24 O -0.248 6.248 25 C -0.115 4.115 26 C -0.186 4.186 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.163 0.837 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.200 0.800 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.157 -15.244 -1.935 17.888 hybrid contribution -0.139 0.454 -0.772 0.907 sum -9.297 -14.790 -2.708 17.678 Atomic orbital electron populations 1.69829 1.07553 1.29167 1.35278 1.25901 0.94700 1.01220 0.92319 0.86393 0.80159 0.80364 0.79925 1.18893 1.20395 1.19038 1.19562 0.98099 0.91361 1.40371 0.90570 1.17609 0.91047 0.91988 0.88354 1.20972 1.03916 0.92936 1.06947 1.20314 0.95207 0.96307 0.96626 1.18866 1.00960 0.92489 1.08967 1.20649 0.92857 0.95955 0.90926 1.60497 1.15792 1.04048 1.49086 1.21790 0.91978 0.92695 0.96064 0.92441 1.22035 0.98162 0.95238 0.83104 1.86920 1.77648 1.50755 1.17426 1.23010 0.94504 0.96719 0.83117 0.91837 1.23373 0.97842 0.99032 0.98801 1.23117 0.98666 1.02119 0.95376 1.23031 0.88835 0.95079 0.95723 1.88753 1.47192 1.70807 1.18031 1.20507 0.98262 0.92922 0.99775 1.21255 0.99561 0.96564 1.01205 0.90922 0.89170 0.89555 0.92336 0.96652 0.83741 0.94959 0.94230 0.80009 0.90372 0.90188 0.90528 0.90898 0.91863 0.92264 0.90024 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.00 10.95 55.55 0.61 -20.39 16 2 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 3 Si 0.91 19.06 29.60 -169.99 -5.03 14.03 16 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.46 -12.66 9.05 -37.74 -0.34 -13.01 16 8 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 9 C 0.11 3.09 5.57 -106.82 -0.60 2.50 16 10 C -0.23 -5.85 9.80 -38.87 -0.38 -6.23 16 11 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 12 C -0.21 -4.72 5.41 -104.33 -0.56 -5.28 16 13 C 0.12 2.24 5.60 -4.97 -0.03 2.22 16 14 N -0.66 -11.51 6.24 -107.98 -0.67 -12.19 16 15 C 0.09 1.16 2.44 -67.71 -0.17 0.99 16 16 H 0.06 0.70 7.80 -51.93 -0.41 0.30 16 17 C 0.09 1.18 6.50 37.16 0.24 1.42 16 18 O -0.53 -7.44 11.12 -58.69 -0.65 -8.09 16 19 C 0.08 1.08 3.09 -25.71 -0.08 1.00 16 20 H 0.06 0.82 8.03 -51.93 -0.42 0.40 16 21 C -0.15 -1.42 6.48 -24.43 -0.16 -1.58 16 22 C -0.16 -1.34 7.02 -24.73 -0.17 -1.52 16 23 C 0.05 0.57 7.80 37.88 0.30 0.86 16 24 O -0.33 -4.96 8.53 -58.69 -0.50 -5.46 16 25 C -0.10 -2.27 9.67 -39.66 -0.38 -2.65 16 26 C -0.17 -4.42 8.70 -38.87 -0.34 -4.76 16 27 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 28 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 29 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 30 H 0.06 1.02 7.30 -51.93 -0.38 0.64 16 31 H 0.02 0.26 7.99 -51.93 -0.42 -0.15 16 32 H 0.34 6.28 8.28 -39.29 -0.33 5.95 16 33 H 0.03 0.33 6.49 -51.93 -0.34 -0.01 16 34 H 0.04 0.52 7.35 -51.93 -0.38 0.13 16 35 H 0.36 3.50 9.12 45.56 0.42 3.92 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.72 6.18 -51.93 -0.32 0.39 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.12 3.17 6.16 -52.48 -0.32 2.85 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -30.60 345.50 -10.01 -40.61 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -5.82 Total: 12.38 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -3.15 Total: -26.10 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: -0.07 Total: -32.58 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -1.15 Total: -13.55 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.60 -10.01 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447905269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.716 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds