Wall clock time and date at job start Tue Mar 31 2020 08:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86806 * 119.99998 * 2 1 4 4 H 1.48497 * 109.47159 * 240.00267 * 3 2 1 5 5 H 1.48501 * 109.46750 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47147 * 120.00058 * 3 2 1 7 7 C 1.39946 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00169 * 197.84218 * 7 2 1 9 9 C 1.41395 * 119.99710 * 17.84661 * 7 2 1 10 10 C 1.40719 * 120.24018 * 204.37867 * 9 7 2 11 11 C 1.37615 * 119.74302 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24802 * 0.02864 * 11 10 9 13 13 C 1.50705 * 119.74941 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.46958 * 89.99894 * 13 12 11 15 15 C 1.46905 * 110.99794 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.47074 * 325.00350 * 15 14 13 17 17 C 1.53003 * 109.47273 * 84.99983 * 15 14 13 18 18 O 1.42899 * 109.46937 * 65.00046 * 17 15 14 19 19 C 1.52997 * 109.47312 * 205.00189 * 15 14 13 20 20 H 1.09006 * 110.27376 * 54.29579 * 19 15 14 21 21 C 1.54945 * 110.31494 * 176.39008 * 19 15 14 22 22 C 1.55408 * 100.89615 * 155.28646 * 21 19 15 23 23 C 1.54378 * 102.30888 * 325.99235 * 22 21 19 24 24 O 1.43236 * 107.59293 * 21.28413 * 23 22 21 25 25 C 1.38631 * 120.50623 * 0.25023 * 12 11 10 26 26 C 1.37621 * 120.24293 * 359.44556 * 25 12 11 27 27 H 0.96999 * 120.00306 * 359.97438 * 1 2 3 28 28 H 1.08006 * 120.12856 * 0.02562 * 10 9 7 29 29 H 1.08006 * 119.87771 * 180.02562 * 11 10 9 30 30 H 1.09007 * 109.46992 * 330.00107 * 13 12 11 31 31 H 1.09003 * 109.46984 * 210.00420 * 13 12 11 32 32 H 1.00902 * 111.00114 * 56.05579 * 14 13 12 33 33 H 1.08996 * 109.47048 * 184.99591 * 17 15 14 34 34 H 1.09001 * 109.47216 * 305.00309 * 17 15 14 35 35 H 0.96696 * 114.00109 * 180.02562 * 18 17 15 36 36 H 1.09004 * 111.12472 * 273.28208 * 21 19 15 37 37 H 1.09004 * 111.12225 * 37.43842 * 21 19 15 38 38 H 1.08999 * 110.88194 * 207.75670 * 22 21 19 39 39 H 1.09003 * 110.93257 * 84.25055 * 22 21 19 40 40 H 1.09003 * 109.83353 * 261.76914 * 23 22 21 41 41 H 1.09004 * 109.90462 * 140.84071 * 23 22 21 42 42 H 1.07997 * 119.88398 * 179.70686 * 25 12 11 43 43 H 1.08003 * 120.12771 * 180.27494 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0491 -1.2346 0.2860 9 6 1.3520 -2.4068 -0.3764 10 6 1.8260 -3.6499 0.0823 11 6 1.1800 -4.8065 -0.2903 12 6 0.0668 -4.7502 -1.1146 13 6 -0.6316 -6.0238 -1.5161 14 7 -1.6775 -6.3392 -0.5339 15 6 -2.3808 -7.5779 -0.8933 16 1 -2.4566 -7.6510 -1.9783 17 6 -1.6037 -8.7805 -0.3542 18 8 -1.6041 -8.7464 1.0743 19 6 -3.7841 -7.5628 -0.2840 20 1 -4.3147 -6.6577 -0.5799 21 6 -4.5760 -8.8192 -0.7258 22 6 -5.6019 -8.9430 0.4350 23 6 -4.7875 -8.4456 1.6485 24 8 -3.7069 -7.6498 1.1478 25 6 -0.4054 -3.5316 -1.5771 26 6 0.2210 -2.3618 -1.2123 27 1 -0.4850 0.8400 0.0004 28 1 2.6933 -3.6961 0.7242 29 1 1.5416 -5.7617 0.0609 30 1 0.0912 -6.8389 -1.5516 31 1 -1.0835 -5.8958 -2.4997 32 1 -2.3245 -5.5713 -0.4354 33 1 -2.0764 -9.7013 -0.6958 34 1 -0.5769 -8.7425 -0.7182 35 1 -1.1279 -9.4808 1.4855 36 1 -5.0774 -8.6524 -1.6792 37 1 -3.9289 -9.6951 -0.7723 38 1 -5.9094 -9.9796 0.5728 39 1 -6.4671 -8.3034 0.2600 40 1 -4.3935 -9.2970 2.2035 41 1 -5.4211 -7.8420 2.2984 42 1 -1.2706 -3.4997 -2.2226 43 1 -0.1511 -1.4131 -1.5701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447905269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:52 Heat of formation + Delta-G solvation = -95.681851 kcal Electronic energy + Delta-G solvation = -23161.369219 eV Core-core repulsion = 19784.064182 eV Total energy + Delta-G solvation = -3377.305037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 5.24 seconds Orbital eigenvalues (eV) -40.63095 -39.51351 -37.79523 -36.38736 -35.30257 -33.03156 -32.51986 -31.16220 -30.62427 -28.22959 -27.48904 -25.18227 -23.67348 -22.85683 -22.40351 -21.55616 -20.91425 -19.20198 -18.29638 -17.63449 -17.36986 -17.00982 -16.31966 -16.01629 -15.72043 -15.51981 -15.41440 -14.98715 -14.53391 -14.38253 -14.14464 -13.85842 -13.78203 -13.75740 -13.38553 -12.99481 -12.76961 -12.68473 -12.58270 -12.45448 -12.27616 -12.02603 -11.96704 -11.82014 -11.42278 -11.32429 -11.24059 -10.98662 -10.59980 -10.12789 -9.37005 -9.22510 -9.06757 -8.62111 -6.31743 0.96881 1.17912 1.37369 1.48858 1.53812 2.21331 2.69169 2.96624 3.41630 3.55365 3.69120 3.82818 3.92103 4.04031 4.11379 4.29918 4.33815 4.37220 4.45075 4.56420 4.60283 4.65150 4.67877 4.74519 4.84147 4.87232 4.91764 4.95625 5.03739 5.06168 5.09435 5.17614 5.31826 5.39535 5.50073 5.73098 5.97804 6.11774 6.23327 6.27772 6.41500 6.44251 6.53912 6.72282 6.96064 7.06478 7.21235 8.34770 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027878 B = 0.003111 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.136781 B = 8998.674706 C = 9345.915897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.505 4.505 8 H 0.073 0.927 9 C 0.079 3.921 10 C -0.246 4.246 11 C -0.072 4.072 12 C -0.199 4.199 13 C 0.132 3.868 14 N -0.679 5.679 15 C 0.081 3.919 16 H 0.078 0.922 17 C 0.094 3.906 18 O -0.552 6.552 19 C 0.078 3.922 20 H 0.055 0.945 21 C -0.143 4.143 22 C -0.147 4.147 23 C 0.042 3.958 24 O -0.366 6.366 25 C -0.098 4.098 26 C -0.190 4.190 27 H 0.287 0.713 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.334 0.666 33 H 0.063 0.937 34 H 0.034 0.966 35 H 0.372 0.628 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.105 0.895 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.145 -17.427 -3.305 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.077 3.923 10 C -0.266 4.266 11 C -0.090 4.090 12 C -0.200 4.200 13 C 0.004 3.996 14 N -0.310 5.310 15 C -0.028 4.028 16 H 0.096 0.904 17 C 0.015 3.985 18 O -0.356 6.356 19 C 0.020 3.980 20 H 0.073 0.927 21 C -0.181 4.181 22 C -0.184 4.184 23 C -0.035 4.035 24 O -0.285 6.285 25 C -0.117 4.117 26 C -0.209 4.209 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.152 0.848 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.218 0.782 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.123 0.877 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.124 -16.960 -2.840 19.955 hybrid contribution 0.091 0.806 -0.465 0.935 sum -10.033 -16.154 -3.305 19.301 Atomic orbital electron populations 1.69884 1.09018 1.30515 1.35786 1.26772 0.95506 1.04522 0.91220 0.85248 0.78780 0.75586 0.80028 1.18422 1.19062 1.18466 1.19813 0.98326 0.92714 1.42593 0.90876 1.17958 0.92036 0.92951 0.89370 1.21166 1.04521 0.93371 1.07531 1.20605 0.95407 0.96452 0.96580 1.19344 1.00022 0.93994 1.06676 1.20551 0.93309 0.93883 0.91809 1.60427 1.16169 1.05154 1.49274 1.21976 0.92401 0.91095 0.97376 0.90440 1.22103 0.97987 0.95961 0.82463 1.86879 1.78175 1.52125 1.18451 1.23093 0.94326 0.98152 0.82412 0.92737 1.23347 0.97610 0.97392 0.99719 1.23097 0.98243 1.03400 0.93680 1.23180 0.88552 0.94865 0.96899 1.88712 1.48682 1.71659 1.19429 1.20778 0.98582 0.92597 0.99732 1.21247 1.00341 0.97039 1.02321 0.90199 0.88973 0.87472 0.91148 0.94917 0.84805 0.91888 0.94796 0.78184 0.88475 0.89406 0.88398 0.90304 0.91579 0.92567 0.87709 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.01 10.95 21.83 0.24 -44.77 16 2 C 0.03 1.81 5.14 85.26 0.44 2.25 16 3 Si 0.98 39.66 29.60 68.60 2.03 41.69 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.50 -28.65 9.05 23.46 0.21 -28.44 16 8 H 0.07 4.01 7.91 -2.91 -0.02 3.98 16 9 C 0.08 4.51 5.57 -21.29 -0.12 4.40 16 10 C -0.25 -12.96 9.80 22.73 0.22 -12.74 16 11 C -0.07 -3.37 9.67 22.22 0.21 -3.15 16 12 C -0.20 -8.72 5.41 -19.67 -0.11 -8.83 16 13 C 0.13 4.51 5.60 85.56 0.48 4.99 16 14 N -0.68 -22.55 6.24 -495.54 -3.09 -25.64 16 15 C 0.08 2.01 2.44 44.91 0.11 2.12 16 16 H 0.08 1.62 7.80 -2.39 -0.02 1.60 16 17 C 0.09 2.10 6.50 71.98 0.47 2.57 16 18 O -0.55 -14.68 11.12 -126.55 -1.41 -16.09 16 19 C 0.08 1.84 3.09 31.26 0.10 1.94 16 20 H 0.05 1.34 8.03 -2.38 -0.02 1.33 16 21 C -0.14 -2.18 6.48 32.09 0.21 -1.97 16 22 C -0.15 -2.12 7.02 31.89 0.22 -1.90 16 23 C 0.04 0.88 7.80 72.45 0.56 1.45 16 24 O -0.37 -10.66 8.53 -126.55 -1.08 -11.74 16 25 C -0.10 -4.66 9.67 22.22 0.21 -4.44 16 26 C -0.19 -10.42 8.70 22.73 0.20 -10.22 16 27 H 0.29 14.15 8.30 -92.71 -0.77 13.38 16 28 H 0.09 4.64 8.06 -2.91 -0.02 4.62 16 29 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 30 H 0.07 2.25 7.30 -2.38 -0.02 2.23 16 31 H 0.03 1.01 7.99 -2.39 -0.02 0.99 16 32 H 0.33 11.98 8.28 -89.69 -0.74 11.24 16 33 H 0.06 1.03 6.49 -2.39 -0.02 1.01 16 34 H 0.03 0.79 7.35 -2.39 -0.02 0.77 16 35 H 0.37 6.72 9.12 -74.06 -0.68 6.04 16 36 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.09 1.21 6.18 -2.38 -0.01 1.20 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 43 H 0.10 5.69 6.16 -2.91 -0.02 5.68 16 Total: -1.00 -68.12 345.50 -0.28 -68.40 By element: Atomic # 1 Polarization: 40.55 SS G_CDS: -0.40 Total: 40.15 kcal Atomic # 6 Polarization: -55.41 SS G_CDS: 3.43 Total: -51.99 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -2.85 Total: -70.42 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -2.49 Total: -27.83 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -68.12 -0.28 -68.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447905269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.284 kcal (2) G-P(sol) polarization free energy of solvation -68.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.24 seconds