Wall clock time and date at job start Tue Mar 31 2020 07:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99815 * 2 1 4 4 H 1.48502 * 109.47159 * 270.00325 * 3 2 1 5 5 H 1.48498 * 109.47119 * 30.00392 * 3 2 1 6 6 H 1.48503 * 109.46743 * 150.00584 * 3 2 1 7 7 C 1.37874 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99498 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00073 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46657 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.46678 * 179.97438 * 10 9 7 12 12 C 1.46898 * 110.99808 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.47014 * 180.02562 * 12 11 10 14 14 C 1.38250 * 119.96185 * 270.02170 * 13 12 11 15 15 C 1.38304 * 120.39694 * 179.76100 * 14 13 12 16 16 C 1.38389 * 119.92109 * 0.04483 * 15 14 13 17 17 C 1.39695 * 119.46921 * 0.32184 * 16 15 14 18 18 C 1.37931 * 120.41677 * 359.47923 * 17 16 15 19 19 O 1.35815 * 117.34350 * 179.23914 * 17 16 15 20 20 C 1.40158 * 120.20042 * 83.24995 * 19 17 16 21 21 C 1.51556 * 116.61903 * 281.12788 * 20 19 17 22 22 C 1.53621 * 110.57334 * 71.73546 * 21 20 19 23 23 C 1.54639 * 108.16683 * 255.69388 * 22 21 20 24 24 O 1.35597 * 121.22654 * 181.15620 * 16 15 14 25 25 H 0.97003 * 120.00245 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47336 * 60.00120 * 9 7 2 27 27 H 1.09000 * 109.47199 * 299.99875 * 9 7 2 28 28 H 1.09003 * 109.47580 * 60.00047 * 10 9 7 29 29 H 1.08998 * 109.47371 * 299.99091 * 10 9 7 30 30 H 1.00899 * 111.00390 * 303.95195 * 11 10 9 31 31 H 1.08996 * 109.47241 * 60.00671 * 12 11 10 32 32 H 1.09000 * 109.47769 * 300.00061 * 12 11 10 33 33 H 1.07999 * 119.80088 * 359.79181 * 14 13 12 34 34 H 1.08001 * 120.03681 * 179.97438 * 15 14 13 35 35 H 1.08005 * 120.14364 * 180.36500 * 18 17 16 36 36 H 1.09004 * 108.01958 * 159.33154 * 20 19 17 37 37 H 1.08997 * 108.02749 * 42.93326 * 20 19 17 38 38 H 1.09002 * 109.25211 * 192.01403 * 21 20 19 39 39 H 1.08995 * 109.26006 * 311.44988 * 21 20 19 40 40 H 1.08998 * 109.72432 * 15.36195 * 22 21 20 41 41 H 1.08998 * 109.72830 * 136.02625 * 22 21 20 42 42 H 1.09005 * 109.63451 * 297.72846 * 23 22 21 43 43 H 1.08998 * 109.63645 * 177.11453 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5107 -4.9342 0.0001 12 6 2.4352 -6.0758 -0.0005 13 6 1.6471 -7.3604 -0.0005 14 6 1.2861 -7.9489 1.1973 15 6 0.5587 -9.1252 1.2078 16 6 0.1894 -9.7192 0.0137 17 6 0.5632 -9.1247 -1.1940 18 6 1.2852 -7.9495 -1.1999 19 8 0.1916 -9.7525 -2.3396 20 6 -1.0916 -9.5547 -2.8676 21 6 -2.2208 -10.3269 -2.2152 22 6 -2.5302 -9.7573 -0.8225 23 6 -1.9436 -10.7220 0.2342 24 8 -0.5435 -10.8598 -0.0070 25 1 -0.4851 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8894 29 1 2.8718 -3.6043 -0.8906 30 1 0.8746 -4.9841 0.7817 31 1 3.0637 -6.0348 0.8890 32 1 3.0626 -6.0349 -0.8909 33 1 1.5735 -7.4872 2.1303 34 1 0.2801 -9.5802 2.1469 35 1 1.5667 -7.4906 -2.1362 36 1 -1.0664 -9.8222 -3.9240 37 1 -1.3250 -8.4924 -2.7977 38 1 -3.1120 -10.2558 -2.8388 39 1 -1.9324 -11.3736 -2.1196 40 1 -2.0721 -8.7738 -0.7172 41 1 -3.6090 -9.6774 -0.6890 42 1 -2.4273 -11.6953 0.1501 43 1 -2.1051 -10.3144 1.2321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449231664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:55 Heat of formation + Delta-G solvation = -58.699022 kcal Electronic energy + Delta-G solvation = -22890.063496 eV Core-core repulsion = 19514.362154 eV Total energy + Delta-G solvation = -3375.701341 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95403 -38.19290 -38.01594 -35.76958 -34.14885 -32.96895 -31.14011 -30.37753 -28.79410 -28.55428 -25.51001 -24.32018 -23.36423 -22.22758 -21.97635 -20.72031 -20.46629 -18.10231 -17.28623 -16.92463 -16.35583 -16.28760 -15.64905 -15.32618 -14.82008 -14.50776 -14.35316 -14.24389 -14.11871 -13.94626 -13.28679 -13.04356 -12.58863 -12.33731 -12.23558 -11.99859 -11.90430 -11.62837 -11.43928 -11.22249 -11.03517 -10.95043 -10.92451 -10.57721 -10.42700 -10.02804 -9.63608 -9.44128 -9.18780 -8.87974 -8.47377 -8.36581 -7.85683 -6.01327 -4.04072 0.98744 1.17578 3.16771 3.31206 3.37332 3.40418 3.41700 3.88339 4.42671 4.43347 4.46151 4.68862 4.72120 4.79207 4.99384 5.02450 5.06907 5.12138 5.17058 5.25246 5.30087 5.34722 5.43382 5.52898 5.56019 5.60928 5.72908 5.84126 5.87474 5.94209 6.13816 6.26088 6.30262 6.35098 6.49996 6.60225 6.94511 7.17132 7.41535 7.69836 7.71051 7.78624 7.91274 8.05843 8.41307 9.03205 9.59849 11.10074 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024991 B = 0.002785 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.114912 B =10050.349464 C =10369.970101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.686 5.686 12 C 0.095 3.905 13 C -0.061 4.061 14 C -0.107 4.107 15 C -0.133 4.133 16 C 0.068 3.932 17 C 0.083 3.917 18 C -0.098 4.098 19 O -0.324 6.324 20 C 0.072 3.928 21 C -0.152 4.152 22 C -0.165 4.165 23 C 0.062 3.938 24 O -0.321 6.321 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.013 0.987 28 H 0.017 0.983 29 H 0.060 0.940 30 H 0.337 0.663 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.094 0.906 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 -22.984 -0.490 23.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.317 5.317 12 C -0.034 4.034 13 C -0.062 4.062 14 C -0.125 4.125 15 C -0.151 4.151 16 C 0.024 3.976 17 C 0.040 3.960 18 C -0.117 4.117 19 O -0.241 6.241 20 C -0.003 4.003 21 C -0.189 4.189 22 C -0.203 4.203 23 C -0.012 4.012 24 O -0.238 6.238 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.032 0.968 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.155 0.845 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.748 -23.150 -1.322 23.488 hybrid contribution 0.355 1.263 1.104 1.714 sum -3.393 -21.887 -0.218 22.149 Atomic orbital electron populations 1.69973 1.06044 1.26609 1.50624 1.25005 0.94847 0.99239 0.95278 0.86583 0.79791 0.83414 0.78138 1.20610 1.21219 1.19909 1.21174 0.93003 0.90990 1.50928 0.92720 1.19065 0.94012 0.90387 0.97734 1.22201 0.97043 0.88225 0.98816 1.60655 1.19519 1.01637 1.49899 1.20907 0.93595 0.87585 1.01323 1.19862 0.98042 0.96160 0.92141 1.20985 0.98383 0.95096 0.98060 1.21238 1.00395 0.96054 0.97434 1.19063 0.97299 0.88958 0.92281 1.18914 1.00107 0.92063 0.84961 1.20937 0.98913 0.92667 0.99140 1.85184 1.31154 1.69069 1.38647 1.21923 0.82079 0.99250 0.97027 1.22037 0.98740 1.01755 0.96406 1.22775 1.01962 0.99913 0.95610 1.23301 0.79864 1.00634 0.97442 1.86058 1.18804 1.27325 1.91630 0.92981 0.95643 0.96817 0.96492 0.92178 0.84546 0.94516 0.90235 0.85451 0.85388 0.84624 0.88762 0.93481 0.90226 0.90330 0.91070 0.90195 0.87955 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.35 5.62 -3.82 -0.02 1.32 16 11 N -0.69 -12.01 6.49 -115.05 -0.75 -12.75 16 12 C 0.09 1.35 5.81 -4.97 -0.03 1.32 16 13 C -0.06 -0.81 5.40 -104.54 -0.56 -1.38 16 14 C -0.11 -1.27 9.68 -39.55 -0.38 -1.65 16 15 C -0.13 -1.54 9.97 -39.50 -0.39 -1.94 16 16 C 0.07 0.88 4.74 -38.98 -0.18 0.69 16 17 C 0.08 1.13 5.36 -39.15 -0.21 0.92 16 18 C -0.10 -1.32 9.68 -39.62 -0.38 -1.70 16 19 O -0.32 -4.33 9.67 -34.86 -0.34 -4.66 16 20 C 0.07 0.74 5.93 36.43 0.22 0.96 16 21 C -0.15 -1.29 5.66 -27.14 -0.15 -1.44 16 22 C -0.16 -1.45 5.67 -25.55 -0.14 -1.59 16 23 C 0.06 0.55 6.42 38.02 0.24 0.79 16 24 O -0.32 -3.93 9.36 -36.11 -0.34 -4.27 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.34 5.74 8.72 -39.29 -0.34 5.40 16 31 H 0.04 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.50 7.81 -51.93 -0.41 0.09 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.70 7.50 -51.93 -0.39 0.31 16 40 H 0.07 0.77 6.57 -51.93 -0.34 0.43 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -31.54 349.70 -9.94 -41.47 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.93 Total: 1.20 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -2.57 Total: -16.70 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: -0.01 Total: -38.89 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.68 Total: -8.93 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.54 -9.94 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449231664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.226 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds