Wall clock time and date at job start Tue Mar 31 2020 07:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99815 * 2 1 4 4 H 1.48502 * 109.47159 * 270.00325 * 3 2 1 5 5 H 1.48498 * 109.47119 * 30.00392 * 3 2 1 6 6 H 1.48503 * 109.46743 * 150.00584 * 3 2 1 7 7 C 1.37874 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99498 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00073 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46657 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.46678 * 179.97438 * 10 9 7 12 12 C 1.46898 * 110.99808 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.47014 * 180.02562 * 12 11 10 14 14 C 1.38250 * 119.96185 * 270.02170 * 13 12 11 15 15 C 1.38304 * 120.39694 * 179.76100 * 14 13 12 16 16 C 1.38389 * 119.92109 * 0.04483 * 15 14 13 17 17 C 1.39695 * 119.46921 * 0.32184 * 16 15 14 18 18 C 1.37931 * 120.41677 * 359.47923 * 17 16 15 19 19 O 1.35815 * 117.34350 * 179.23914 * 17 16 15 20 20 C 1.40158 * 120.20042 * 83.24995 * 19 17 16 21 21 C 1.51556 * 116.61903 * 281.12788 * 20 19 17 22 22 C 1.53621 * 110.57334 * 71.73546 * 21 20 19 23 23 C 1.54639 * 108.16683 * 255.69388 * 22 21 20 24 24 O 1.35597 * 121.22654 * 181.15620 * 16 15 14 25 25 H 0.97003 * 120.00245 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47336 * 60.00120 * 9 7 2 27 27 H 1.09000 * 109.47199 * 299.99875 * 9 7 2 28 28 H 1.09003 * 109.47580 * 60.00047 * 10 9 7 29 29 H 1.08998 * 109.47371 * 299.99091 * 10 9 7 30 30 H 1.00899 * 111.00390 * 303.95195 * 11 10 9 31 31 H 1.08996 * 109.47241 * 60.00671 * 12 11 10 32 32 H 1.09000 * 109.47769 * 300.00061 * 12 11 10 33 33 H 1.07999 * 119.80088 * 359.79181 * 14 13 12 34 34 H 1.08001 * 120.03681 * 179.97438 * 15 14 13 35 35 H 1.08005 * 120.14364 * 180.36500 * 18 17 16 36 36 H 1.09004 * 108.01958 * 159.33154 * 20 19 17 37 37 H 1.08997 * 108.02749 * 42.93326 * 20 19 17 38 38 H 1.09002 * 109.25211 * 192.01403 * 21 20 19 39 39 H 1.08995 * 109.26006 * 311.44988 * 21 20 19 40 40 H 1.08998 * 109.72432 * 15.36195 * 22 21 20 41 41 H 1.08998 * 109.72830 * 136.02625 * 22 21 20 42 42 H 1.09005 * 109.63451 * 297.72846 * 23 22 21 43 43 H 1.08998 * 109.63645 * 177.11453 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5107 -4.9342 0.0001 12 6 2.4352 -6.0758 -0.0005 13 6 1.6471 -7.3604 -0.0005 14 6 1.2861 -7.9489 1.1973 15 6 0.5587 -9.1252 1.2078 16 6 0.1894 -9.7192 0.0137 17 6 0.5632 -9.1247 -1.1940 18 6 1.2852 -7.9495 -1.1999 19 8 0.1916 -9.7525 -2.3396 20 6 -1.0916 -9.5547 -2.8676 21 6 -2.2208 -10.3269 -2.2152 22 6 -2.5302 -9.7573 -0.8225 23 6 -1.9436 -10.7220 0.2342 24 8 -0.5435 -10.8598 -0.0070 25 1 -0.4851 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8894 29 1 2.8718 -3.6043 -0.8906 30 1 0.8746 -4.9841 0.7817 31 1 3.0637 -6.0348 0.8890 32 1 3.0626 -6.0349 -0.8909 33 1 1.5735 -7.4872 2.1303 34 1 0.2801 -9.5802 2.1469 35 1 1.5667 -7.4906 -2.1362 36 1 -1.0664 -9.8222 -3.9240 37 1 -1.3250 -8.4924 -2.7977 38 1 -3.1120 -10.2558 -2.8388 39 1 -1.9324 -11.3736 -2.1196 40 1 -2.0721 -8.7738 -0.7172 41 1 -3.6090 -9.6774 -0.6890 42 1 -2.4273 -11.6953 0.1501 43 1 -2.1051 -10.3144 1.2321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449231664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:53 Heat of formation + Delta-G solvation = -77.711775 kcal Electronic energy + Delta-G solvation = -22890.887950 eV Core-core repulsion = 19514.362154 eV Total energy + Delta-G solvation = -3376.525796 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.85909 -39.18685 -38.91550 -37.18995 -35.23651 -34.70570 -32.47161 -31.49648 -30.12601 -29.50818 -26.97586 -25.42938 -24.77292 -23.12959 -22.89344 -22.44088 -21.47232 -19.01619 -18.50194 -18.17644 -17.82898 -17.22437 -16.85015 -16.42802 -16.31224 -15.67882 -15.56239 -15.39208 -15.14356 -14.99782 -14.44053 -14.22581 -14.02576 -13.89330 -13.27952 -13.10731 -12.99961 -12.88345 -12.78161 -12.52700 -12.39115 -12.26235 -12.05926 -11.93292 -11.67512 -11.42732 -11.31317 -11.19432 -10.56309 -10.49763 -9.85338 -9.50726 -9.22233 -8.20128 -6.31568 0.02708 0.21548 1.41036 1.42473 1.53412 2.23244 2.41332 2.56284 2.95004 3.13486 3.49016 3.70291 3.76867 3.83737 3.89547 4.02444 4.16538 4.24533 4.31389 4.36333 4.41585 4.46698 4.52962 4.56279 4.64087 4.67914 4.74351 4.82340 4.89649 4.94641 5.07502 5.07857 5.17197 5.25463 5.32372 5.44761 5.51399 5.63462 5.67609 5.78262 6.12036 6.25575 6.31355 6.51179 6.79321 6.86011 7.37827 8.92003 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024991 B = 0.002785 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.114912 B =10050.349464 C =10369.970101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.032 3.968 10 C 0.083 3.917 11 N -0.693 5.693 12 C 0.100 3.900 13 C -0.071 4.071 14 C -0.103 4.103 15 C -0.132 4.132 16 C 0.065 3.935 17 C 0.069 3.931 18 C -0.110 4.110 19 O -0.342 6.342 20 C 0.063 3.937 21 C -0.147 4.147 22 C -0.165 4.165 23 C 0.057 3.943 24 O -0.337 6.337 25 H 0.264 0.736 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.025 0.975 29 H 0.060 0.940 30 H 0.340 0.660 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.131 0.869 36 H 0.111 0.889 37 H 0.036 0.964 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.045 0.955 41 H 0.101 0.899 42 H 0.126 0.874 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.387 -23.646 0.214 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.006 4.006 10 C -0.045 4.045 11 N -0.324 5.324 12 C -0.028 4.028 13 C -0.072 4.072 14 C -0.122 4.122 15 C -0.150 4.150 16 C 0.021 3.979 17 C 0.025 3.975 18 C -0.129 4.129 19 O -0.259 6.259 20 C -0.011 4.011 21 C -0.185 4.185 22 C -0.202 4.202 23 C -0.017 4.017 24 O -0.254 6.254 25 H 0.072 0.928 26 H 0.011 0.989 27 H 0.010 0.990 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.157 0.843 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.149 0.851 36 H 0.129 0.871 37 H 0.055 0.945 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.119 0.881 42 H 0.144 0.856 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.450 -23.834 -0.619 24.091 hybrid contribution 0.177 1.367 0.859 1.624 sum -3.274 -22.467 0.240 22.705 Atomic orbital electron populations 1.70108 1.07837 1.27787 1.51481 1.25979 0.95763 1.03390 0.94656 0.85426 0.78669 0.78324 0.78485 1.19839 1.20738 1.18616 1.21626 0.93608 0.92216 1.50825 0.92004 1.18919 0.94334 0.92313 0.95031 1.21809 0.95599 0.87966 0.99135 1.60530 1.20164 1.01423 1.50322 1.20888 0.93217 0.86600 1.02089 1.19773 0.98856 0.95943 0.92632 1.21201 0.97669 0.95050 0.98255 1.21474 0.99798 0.95816 0.97960 1.19210 0.97306 0.89015 0.92397 1.19064 1.00548 0.92344 0.85549 1.20985 0.99486 0.93137 0.99272 1.85141 1.32752 1.69218 1.38792 1.22172 0.81708 0.99120 0.98144 1.22028 0.98776 1.01085 0.96580 1.22780 1.03029 0.98549 0.95856 1.23566 0.78209 1.02037 0.97885 1.86020 1.20397 1.27150 1.91807 0.92761 0.98911 0.98973 0.95726 0.92164 0.84277 0.92950 0.90136 0.83518 0.83127 0.85117 0.87081 0.94515 0.87924 0.90500 0.93568 0.88101 0.85620 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 44.14 29.54 68.60 2.03 46.16 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.54 -31.01 9.11 25.60 0.23 -30.77 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.68 5.23 29.85 0.16 1.83 16 10 C 0.08 3.45 5.62 86.30 0.49 3.94 16 11 N -0.69 -24.19 6.49 -517.91 -3.36 -27.55 16 12 C 0.10 2.77 5.81 85.56 0.50 3.26 16 13 C -0.07 -1.85 5.40 -19.81 -0.11 -1.96 16 14 C -0.10 -2.31 9.68 22.29 0.22 -2.09 16 15 C -0.13 -2.87 9.97 22.32 0.22 -2.65 16 16 C 0.07 1.63 4.74 22.66 0.11 1.74 16 17 C 0.07 1.88 5.36 22.55 0.12 2.00 16 18 C -0.11 -3.02 9.68 22.25 0.22 -2.81 16 19 O -0.34 -9.24 9.67 -67.77 -0.66 -9.90 16 20 C 0.06 1.28 5.93 71.51 0.42 1.71 16 21 C -0.15 -2.30 5.66 30.33 0.17 -2.13 16 22 C -0.16 -2.67 5.67 31.36 0.18 -2.49 16 23 C 0.06 0.90 6.42 72.54 0.47 1.36 16 24 O -0.34 -7.84 9.36 -72.23 -0.68 -8.51 16 25 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.34 11.55 8.72 -89.69 -0.78 10.76 16 31 H 0.05 1.30 8.09 -2.39 -0.02 1.28 16 32 H 0.08 2.20 8.08 -2.39 -0.02 2.18 16 33 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 34 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.13 3.58 8.06 -2.91 -0.02 3.55 16 36 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 0.80 7.81 -2.39 -0.02 0.78 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.25 7.50 -2.39 -0.02 1.23 16 40 H 0.05 0.99 6.57 -2.39 -0.02 0.98 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -68.34 349.70 1.68 -66.67 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.21 Total: 18.40 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 3.85 Total: -28.59 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -3.08 Total: -84.23 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -1.33 Total: -18.41 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -68.34 1.68 -66.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449231664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.045 kcal (2) G-P(sol) polarization free energy of solvation -68.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds