Wall clock time and date at job start Tue Mar 31 2020 06:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46742 * 2 1 4 4 C 1.52997 * 109.47117 * 119.99898 * 2 1 3 5 5 H 1.09000 * 110.69779 * 303.13982 * 4 2 1 6 6 C 1.54257 * 110.78972 * 179.61503 * 4 2 1 7 7 C 1.52324 * 112.58965 * 217.19597 * 6 4 2 8 8 H 1.09006 * 108.87060 * 120.81874 * 7 6 4 9 9 N 1.46499 * 108.87333 * 239.17809 * 7 6 4 10 10 C 1.39683 * 120.00535 * 209.52990 * 9 7 6 11 11 C 1.39338 * 119.94767 * 359.72932 * 10 9 7 12 12 C 1.38481 * 120.42039 * 179.71692 * 11 10 9 13 13 C 1.37687 * 120.32488 * 0.55619 * 12 11 10 14 14 C 1.40752 * 119.89088 * 359.72160 * 13 12 11 15 15 C 1.41416 * 120.20293 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99324 * 150.19046 * 15 14 13 17 17 C 1.39924 * 120.00423 * 330.19191 * 15 14 13 18 18 N 1.30826 * 119.99815 * 161.73383 * 17 15 14 19 19 Si 1.86800 * 119.99692 * 341.73131 * 17 15 14 20 20 H 1.48498 * 109.46982 * 95.41691 * 19 17 15 21 21 H 1.48505 * 109.46815 * 215.41177 * 19 17 15 22 22 H 1.48500 * 109.47244 * 335.41316 * 19 17 15 23 23 C 1.38274 * 119.95072 * 179.97438 * 10 9 7 24 24 C 1.54260 * 112.58877 * 0.02562 * 7 6 4 25 25 S 1.83955 * 110.78660 * 66.45210 * 4 2 1 26 26 H 1.08997 * 109.47086 * 300.00269 * 1 2 3 27 27 H 1.09002 * 109.46679 * 60.00591 * 1 2 3 28 28 H 1.09000 * 109.46902 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47275 * 240.00195 * 2 1 3 30 30 H 1.08997 * 109.47550 * 60.00015 * 3 2 1 31 31 H 1.09000 * 109.46740 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47483 * 299.99477 * 3 2 1 33 33 H 1.09000 * 108.86482 * 338.01961 * 6 4 2 34 34 H 1.09003 * 108.86611 * 96.37628 * 6 4 2 35 35 H 0.97008 * 119.99378 * 29.53740 * 9 7 6 36 36 H 1.07996 * 119.79055 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.83670 * 180.27778 * 12 11 10 38 38 H 1.08000 * 120.05311 * 179.70235 * 13 12 11 39 39 H 0.97003 * 119.99322 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.16190 * 359.97438 * 23 10 9 41 41 H 1.09002 * 110.78478 * 266.25463 * 24 7 6 42 42 H 1.09007 * 110.78830 * 142.79962 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6429 -0.2563 2.1516 6 6 3.5822 -0.7474 1.2751 7 6 4.1360 -2.0522 1.8328 8 1 4.7643 -2.5209 1.0753 9 7 4.9593 -1.7540 3.0073 10 6 6.0337 -2.5839 3.3361 11 6 6.3180 -3.6983 2.5495 12 6 7.3843 -4.5243 2.8630 13 6 8.1688 -4.2594 3.9631 14 6 7.8902 -3.1406 4.7703 15 6 8.6920 -2.8620 5.9014 16 1 8.8257 -1.8421 6.2305 17 6 9.3122 -3.9076 6.5942 18 7 10.3162 -3.6572 7.3946 19 14 8.7063 -5.6611 6.3761 20 1 9.5265 -6.3434 5.3431 21 1 8.8263 -6.3901 7.6644 22 1 7.2846 -5.6440 5.9476 23 6 6.8105 -2.3011 4.4445 24 6 3.0247 -3.0415 2.2402 25 16 1.6099 -2.5088 1.1923 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 3.9541 -0.6120 0.2595 34 1 3.9384 0.0785 1.8909 35 1 4.7583 -0.9802 3.5567 36 1 5.7059 -3.9164 1.6869 37 1 7.5989 -5.3831 2.2442 38 1 8.9964 -4.9093 4.2064 39 1 10.7463 -4.3822 7.8745 40 1 6.5889 -1.4396 5.0569 41 1 2.7827 -2.9373 3.2979 42 1 3.3146 -4.0662 2.0076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449697214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:21 Heat of formation + Delta-G solvation = 3.962804 kcal Electronic energy + Delta-G solvation = -20577.463353 eV Core-core repulsion = 17647.232103 eV Total energy + Delta-G solvation = -2930.231250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.73441 -37.42962 -35.76524 -33.52534 -31.98445 -30.23632 -28.77911 -27.56239 -27.46079 -25.11676 -24.74945 -21.57559 -21.12170 -20.39927 -19.52717 -17.66068 -16.97320 -16.17905 -15.47623 -15.24469 -14.99381 -14.74062 -14.55311 -13.84252 -13.74541 -13.37649 -13.00225 -12.96746 -12.57100 -12.51656 -12.50298 -12.31013 -11.87090 -11.68546 -11.56191 -11.37408 -11.12354 -11.07545 -10.87707 -10.81876 -10.71594 -10.47010 -9.98319 -9.75669 -9.52550 -9.27528 -8.95107 -7.79391 -7.62670 -6.90594 -6.54385 -4.46859 1.76917 2.23112 2.67196 2.87917 3.16782 3.26851 3.38354 3.93432 4.04393 4.26065 4.37945 4.57165 4.70372 4.83098 4.86442 5.02543 5.13335 5.19730 5.34257 5.35721 5.47426 5.51336 5.55989 5.60732 5.74426 5.78885 5.85808 5.98116 5.99899 6.02580 6.05725 6.30159 6.55535 6.76672 6.80317 6.95820 7.27923 7.52440 7.64796 7.76381 7.96990 8.30513 8.36211 8.46598 8.74985 8.88829 10.12201 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.034341 B = 0.003285 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.154198 B = 8521.127423 C = 8900.014798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.077 4.077 3 C -0.146 4.146 4 C -0.026 4.026 5 H 0.094 0.906 6 C -0.129 4.129 7 C 0.157 3.843 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.232 3.768 11 C -0.302 4.302 12 C -0.048 4.048 13 C -0.270 4.270 14 C 0.125 3.875 15 C -0.451 4.451 16 H 0.088 0.912 17 C 0.085 3.915 18 N -0.812 5.812 19 Si 0.915 3.085 20 H -0.271 1.271 21 H -0.294 1.294 22 H -0.244 1.244 23 C -0.275 4.275 24 C -0.075 4.075 25 S -0.305 6.305 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.390 0.610 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.284 0.716 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.231 5.680 -11.899 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 C -0.205 4.205 4 C -0.154 4.154 5 H 0.112 0.888 6 C -0.168 4.168 7 C 0.048 3.952 8 H 0.109 0.891 9 N -0.386 5.386 10 C 0.133 3.867 11 C -0.325 4.325 12 C -0.066 4.066 13 C -0.291 4.291 14 C 0.122 3.878 15 C -0.479 4.479 16 H 0.106 0.894 17 C -0.133 4.133 18 N -0.437 5.437 19 Si 0.742 3.258 20 H -0.198 1.198 21 H -0.222 1.222 22 H -0.167 1.167 23 C -0.299 4.299 24 C -0.225 4.225 25 S -0.078 6.078 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.225 0.775 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.982 4.906 -12.380 20.803 hybrid contribution 0.762 0.014 0.890 1.172 sum -15.220 4.920 -11.490 19.694 Atomic orbital electron populations 1.21869 0.94610 1.02293 1.01820 1.21066 0.96248 0.95958 0.96357 1.21891 1.01497 0.95099 1.02057 1.23966 0.96962 0.92861 1.01648 0.88815 1.22358 0.93201 0.98077 1.03210 1.21302 0.91585 0.92885 0.89424 0.89097 1.44794 1.32455 1.31179 1.30202 1.17548 0.86400 0.89622 0.93091 1.19920 1.05963 1.01428 1.05160 1.20372 0.93966 0.96593 0.95714 1.20914 1.04406 1.03800 0.99940 1.17446 0.89014 0.89853 0.91515 1.19457 1.23001 0.96103 1.09378 0.89393 1.26145 0.91975 1.01959 0.93221 1.69708 1.15731 1.35931 1.22295 0.86269 0.82393 0.80691 0.76473 1.19766 1.22179 1.16745 1.20396 1.01363 1.06596 1.01570 1.24892 0.93013 1.03273 1.01354 1.87891 1.42163 1.08386 1.69319 0.92575 0.92415 0.92044 0.90048 0.92485 0.92136 0.92249 0.89814 0.90012 0.77532 0.88965 0.89011 0.88532 0.90574 0.88535 0.88884 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.05 37.16 0.34 -0.84 16 2 C -0.08 -0.63 2.34 -90.62 -0.21 -0.84 16 3 C -0.15 -1.01 8.97 37.16 0.33 -0.68 16 4 C -0.03 -0.25 2.84 -26.07 -0.07 -0.32 16 5 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 6 C -0.13 -1.32 4.71 -26.42 -0.12 -1.44 16 7 C 0.16 2.03 2.68 -67.62 -0.18 1.85 16 8 H 0.09 1.28 6.26 -51.93 -0.32 0.95 16 9 N -0.75 -11.67 5.06 -51.91 -0.26 -11.93 16 10 C 0.23 4.67 6.63 -83.86 -0.56 4.12 16 11 C -0.30 -6.14 9.20 -39.08 -0.36 -6.49 16 12 C -0.05 -1.03 10.02 -39.69 -0.40 -1.43 16 13 C -0.27 -6.61 7.17 -38.83 -0.28 -6.88 16 14 C 0.13 3.21 5.10 -106.85 -0.55 2.66 16 15 C -0.45 -12.34 9.57 -37.74 -0.36 -12.70 16 16 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 17 C 0.09 2.27 5.40 -17.35 -0.09 2.18 16 18 N -0.81 -21.95 13.93 55.55 0.77 -21.18 16 19 Si 0.91 21.29 24.52 -169.99 -4.17 17.12 16 20 H -0.27 -6.14 6.71 56.52 0.38 -5.77 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.24 -5.84 6.86 56.52 0.39 -5.45 16 23 C -0.28 -6.34 9.63 -38.68 -0.37 -6.71 16 24 C -0.08 -0.98 7.09 37.82 0.27 -0.72 16 25 S -0.31 -3.67 21.75 -107.50 -2.34 -6.01 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.56 7.31 -51.93 -0.38 0.18 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.42 7.09 -51.93 -0.37 0.06 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.81 7.46 -51.93 -0.39 0.42 16 34 H 0.08 0.80 7.47 -51.93 -0.39 0.41 16 35 H 0.39 5.51 8.28 -40.82 -0.34 5.17 16 36 H 0.09 1.66 6.15 -52.49 -0.32 1.33 16 37 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.10 2.37 4.72 -52.49 -0.25 2.13 16 39 H 0.28 6.95 8.30 -40.82 -0.34 6.62 16 40 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 41 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 42 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -27.59 338.61 -10.08 -37.67 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.57 Total: 7.48 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -2.62 Total: -28.26 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.51 Total: -33.11 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.17 Total: 17.12 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -2.34 Total: -6.01 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.59 -10.08 -37.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449697214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.635 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds