Wall clock time and date at job start Tue Mar 31 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46742 * 2 1 4 4 C 1.52997 * 109.47117 * 119.99898 * 2 1 3 5 5 H 1.09000 * 110.69779 * 303.13982 * 4 2 1 6 6 C 1.54257 * 110.78972 * 179.61503 * 4 2 1 7 7 C 1.52324 * 112.58965 * 217.19597 * 6 4 2 8 8 H 1.09006 * 108.87060 * 120.81874 * 7 6 4 9 9 N 1.46499 * 108.87333 * 239.17809 * 7 6 4 10 10 C 1.39683 * 120.00535 * 209.52990 * 9 7 6 11 11 C 1.39338 * 119.94767 * 359.72932 * 10 9 7 12 12 C 1.38481 * 120.42039 * 179.71692 * 11 10 9 13 13 C 1.37687 * 120.32488 * 0.55619 * 12 11 10 14 14 C 1.40752 * 119.89088 * 359.72160 * 13 12 11 15 15 C 1.41416 * 120.20293 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99324 * 150.19046 * 15 14 13 17 17 C 1.39924 * 120.00423 * 330.19191 * 15 14 13 18 18 N 1.30826 * 119.99815 * 161.73383 * 17 15 14 19 19 Si 1.86800 * 119.99692 * 341.73131 * 17 15 14 20 20 H 1.48498 * 109.46982 * 95.41691 * 19 17 15 21 21 H 1.48505 * 109.46815 * 215.41177 * 19 17 15 22 22 H 1.48500 * 109.47244 * 335.41316 * 19 17 15 23 23 C 1.38274 * 119.95072 * 179.97438 * 10 9 7 24 24 C 1.54260 * 112.58877 * 0.02562 * 7 6 4 25 25 S 1.83955 * 110.78660 * 66.45210 * 4 2 1 26 26 H 1.08997 * 109.47086 * 300.00269 * 1 2 3 27 27 H 1.09002 * 109.46679 * 60.00591 * 1 2 3 28 28 H 1.09000 * 109.46902 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47275 * 240.00195 * 2 1 3 30 30 H 1.08997 * 109.47550 * 60.00015 * 3 2 1 31 31 H 1.09000 * 109.46740 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47483 * 299.99477 * 3 2 1 33 33 H 1.09000 * 108.86482 * 338.01961 * 6 4 2 34 34 H 1.09003 * 108.86611 * 96.37628 * 6 4 2 35 35 H 0.97008 * 119.99378 * 29.53740 * 9 7 6 36 36 H 1.07996 * 119.79055 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.83670 * 180.27778 * 12 11 10 38 38 H 1.08000 * 120.05311 * 179.70235 * 13 12 11 39 39 H 0.97003 * 119.99322 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.16190 * 359.97438 * 23 10 9 41 41 H 1.09002 * 110.78478 * 266.25463 * 24 7 6 42 42 H 1.09007 * 110.78830 * 142.79962 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6429 -0.2563 2.1516 6 6 3.5822 -0.7474 1.2751 7 6 4.1360 -2.0522 1.8328 8 1 4.7643 -2.5209 1.0753 9 7 4.9593 -1.7540 3.0073 10 6 6.0337 -2.5839 3.3361 11 6 6.3180 -3.6983 2.5495 12 6 7.3843 -4.5243 2.8630 13 6 8.1688 -4.2594 3.9631 14 6 7.8902 -3.1406 4.7703 15 6 8.6920 -2.8620 5.9014 16 1 8.8257 -1.8421 6.2305 17 6 9.3122 -3.9076 6.5942 18 7 10.3162 -3.6572 7.3946 19 14 8.7063 -5.6611 6.3761 20 1 9.5265 -6.3434 5.3431 21 1 8.8263 -6.3901 7.6644 22 1 7.2846 -5.6440 5.9476 23 6 6.8105 -2.3011 4.4445 24 6 3.0247 -3.0415 2.2402 25 16 1.6099 -2.5088 1.1923 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 3.9541 -0.6120 0.2595 34 1 3.9384 0.0785 1.8909 35 1 4.7583 -0.9802 3.5567 36 1 5.7059 -3.9164 1.6869 37 1 7.5989 -5.3831 2.2442 38 1 8.9964 -4.9093 4.2064 39 1 10.7463 -4.3822 7.8745 40 1 6.5889 -1.4396 5.0569 41 1 2.7827 -2.9373 3.2979 42 1 3.3146 -4.0662 2.0076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449697214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:18 Heat of formation + Delta-G solvation = -9.930992 kcal Electronic energy + Delta-G solvation = -20578.065833 eV Core-core repulsion = 17647.232103 eV Total energy + Delta-G solvation = -2930.833730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 4.94 seconds Orbital eigenvalues (eV) -40.17266 -38.60209 -36.90587 -35.32531 -33.33328 -32.06440 -29.84482 -28.96851 -28.03384 -26.98930 -25.71985 -22.95772 -22.75484 -21.50299 -20.62536 -19.40814 -17.92479 -17.85097 -16.97721 -16.52631 -16.33809 -15.91926 -15.70977 -15.20875 -14.71730 -14.60866 -14.29525 -14.27521 -14.03538 -13.79891 -13.68329 -13.31907 -13.14936 -13.00603 -12.77708 -12.58719 -12.37294 -12.27847 -12.15320 -11.92034 -11.70664 -11.63934 -11.55728 -11.33558 -11.09797 -10.94337 -10.50689 -9.47657 -8.87518 -8.75159 -8.11602 -6.49609 0.84081 0.86911 1.07703 1.28763 1.32761 1.43875 1.52687 2.16358 2.63925 2.68200 3.41953 3.58552 3.63718 3.87303 3.95770 4.04689 4.17633 4.30007 4.37585 4.41159 4.56360 4.61597 4.65467 4.73463 4.81413 4.81596 4.87103 4.99462 5.00187 5.02393 5.07721 5.12911 5.20543 5.23903 5.41260 5.44509 5.53644 5.76359 5.86146 6.00146 6.08864 6.39165 6.68167 6.81950 6.87868 7.06531 8.21459 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.034341 B = 0.003285 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.154198 B = 8521.127423 C = 8900.014798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.144 4.144 4 C -0.015 4.015 5 H 0.098 0.902 6 C -0.124 4.124 7 C 0.157 3.843 8 H 0.088 0.912 9 N -0.741 5.741 10 C 0.244 3.756 11 C -0.289 4.289 12 C -0.049 4.049 13 C -0.294 4.294 14 C 0.107 3.893 15 C -0.489 4.489 16 H 0.053 0.947 17 C 0.049 3.951 18 N -0.854 5.854 19 Si 0.970 3.030 20 H -0.260 1.260 21 H -0.281 1.281 22 H -0.255 1.255 23 C -0.292 4.292 24 C -0.075 4.075 25 S -0.321 6.321 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.399 0.601 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.090 0.910 39 H 0.292 0.708 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.401 5.558 -14.426 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 C -0.203 4.203 4 C -0.143 4.143 5 H 0.116 0.884 6 C -0.163 4.163 7 C 0.050 3.950 8 H 0.106 0.894 9 N -0.373 5.373 10 C 0.142 3.858 11 C -0.311 4.311 12 C -0.067 4.067 13 C -0.314 4.314 14 C 0.104 3.896 15 C -0.519 4.519 16 H 0.071 0.929 17 C -0.165 4.165 18 N -0.481 5.481 19 Si 0.794 3.206 20 H -0.186 1.186 21 H -0.208 1.208 22 H -0.178 1.178 23 C -0.316 4.316 24 C -0.224 4.224 25 S -0.094 6.094 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.235 0.765 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.188 4.813 -14.925 24.014 hybrid contribution 1.204 0.189 1.457 1.900 sum -16.983 5.002 -13.468 22.245 Atomic orbital electron populations 1.21853 0.94406 1.01548 1.02624 1.21061 0.96375 0.96554 0.95297 1.21873 1.01539 0.94071 1.02767 1.24058 0.96457 0.91038 1.02751 0.88392 1.22295 0.93479 0.96672 1.03857 1.21494 0.91160 0.94372 0.87992 0.89439 1.44864 1.31116 1.30431 1.30881 1.17564 0.86645 0.89843 0.91708 1.20346 1.05168 1.00270 1.05323 1.20756 0.93459 0.97624 0.94881 1.20973 1.05369 1.03811 1.01245 1.17593 0.89598 0.91186 0.91239 1.19457 1.25912 0.94960 1.11545 0.92922 1.26800 0.91868 1.05063 0.92803 1.69738 1.17089 1.37298 1.24008 0.85420 0.81159 0.76869 0.77118 1.18556 1.20799 1.17827 1.20507 1.01683 1.06511 1.02941 1.24749 0.93550 1.03071 1.01079 1.88031 1.41792 1.10739 1.68809 0.92259 0.91212 0.93495 0.90331 0.92140 0.92020 0.91270 0.88590 0.89037 0.76543 0.85800 0.85812 0.89184 0.89755 0.88684 0.89760 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.05 71.98 0.65 -1.29 16 2 C -0.07 -0.97 2.34 -10.79 -0.03 -1.00 16 3 C -0.14 -1.50 8.97 71.98 0.65 -0.86 16 4 C -0.01 -0.24 2.84 31.02 0.09 -0.15 16 5 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 6 C -0.12 -2.10 4.71 30.80 0.15 -1.96 16 7 C 0.16 3.57 2.68 45.19 0.12 3.69 16 8 H 0.09 2.11 6.26 -2.38 -0.01 2.10 16 9 N -0.74 -20.98 5.06 -318.15 -1.61 -22.59 16 10 C 0.24 9.32 6.63 38.16 0.25 9.58 16 11 C -0.29 -10.77 9.20 22.59 0.21 -10.56 16 12 C -0.05 -1.98 10.02 22.20 0.22 -1.76 16 13 C -0.29 -14.18 7.17 22.75 0.16 -14.02 16 14 C 0.11 5.58 5.10 -21.31 -0.11 5.47 16 15 C -0.49 -28.24 9.57 23.46 0.22 -28.01 16 16 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 17 C 0.05 2.68 5.40 85.25 0.46 3.14 16 18 N -0.85 -48.22 13.93 21.82 0.30 -47.91 16 19 Si 0.97 44.55 24.52 68.60 1.68 46.23 16 20 H -0.26 -11.32 6.71 99.48 0.67 -10.65 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 22 H -0.25 -11.95 6.86 99.48 0.68 -11.27 16 23 C -0.29 -13.48 9.63 22.85 0.22 -13.26 16 24 C -0.07 -1.76 7.09 72.41 0.51 -1.24 16 25 S -0.32 -6.98 21.75 -56.49 -1.23 -8.21 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.76 7.31 -2.39 -0.02 0.74 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.65 7.09 -2.39 -0.02 0.63 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 1.47 7.46 -2.39 -0.02 1.45 16 34 H 0.09 1.44 7.47 -2.39 -0.02 1.42 16 35 H 0.40 10.26 8.28 -92.70 -0.77 9.49 16 36 H 0.12 3.87 6.15 -2.91 -0.02 3.85 16 37 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.09 4.40 4.72 -2.91 -0.01 4.39 16 39 H 0.29 14.81 8.30 -92.71 -0.77 14.04 16 40 H 0.09 4.29 8.06 -2.91 -0.02 4.27 16 41 H 0.08 2.14 8.05 -2.39 -0.02 2.12 16 42 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -61.44 338.61 3.11 -58.33 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.18 Total: 26.38 kcal Atomic # 6 Polarization: -56.01 SS G_CDS: 3.78 Total: -52.23 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -1.31 Total: -70.50 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.68 Total: 46.23 kcal Atomic # 16 Polarization: -6.98 SS G_CDS: -1.23 Total: -8.21 kcal Total: -61.44 3.11 -58.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449697214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.398 kcal (2) G-P(sol) polarization free energy of solvation -61.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.94 seconds