Wall clock time and date at job start Tue Mar 31 2020 06:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47027 * 2 1 4 4 C 1.53005 * 109.47038 * 119.99648 * 2 1 3 5 5 H 1.08995 * 110.35693 * 304.12870 * 4 2 1 6 6 C 1.54276 * 110.40016 * 181.68320 * 4 2 1 7 7 C 1.53856 * 108.92311 * 213.25372 * 6 4 2 8 8 H 1.08996 * 109.97578 * 287.88883 * 7 6 4 9 9 N 1.46507 * 110.00253 * 166.63508 * 7 6 4 10 10 C 1.39684 * 119.99603 * 156.06247 * 9 7 6 11 11 C 1.39338 * 119.95531 * 359.72506 * 10 9 7 12 12 C 1.38472 * 120.42206 * 179.72164 * 11 10 9 13 13 C 1.37686 * 120.32942 * 0.55406 * 12 11 10 14 14 C 1.40748 * 119.89063 * 359.72432 * 13 12 11 15 15 C 1.41406 * 120.20915 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00028 * 204.44339 * 15 14 13 17 17 C 1.39926 * 120.00126 * 24.43534 * 15 14 13 18 18 N 1.30840 * 119.99773 * 17.89415 * 17 15 14 19 19 Si 1.86794 * 120.00503 * 197.89024 * 17 15 14 20 20 H 1.48494 * 109.47298 * 90.00030 * 19 17 15 21 21 H 1.48501 * 109.47383 * 210.00246 * 19 17 15 22 22 H 1.48507 * 109.47105 * 330.00406 * 19 17 15 23 23 C 1.38280 * 119.95054 * 180.02562 * 10 9 7 24 24 C 1.55129 * 106.90037 * 47.25758 * 7 6 4 25 25 S 1.83089 * 110.40099 * 66.45646 * 4 2 1 26 26 H 1.08996 * 109.47375 * 60.00489 * 1 2 3 27 27 H 1.08997 * 109.47219 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47447 * 300.00346 * 1 2 3 29 29 H 1.08995 * 109.47519 * 239.99881 * 2 1 3 30 30 H 1.09000 * 109.46687 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46812 * 299.99779 * 3 2 1 32 32 H 1.08995 * 109.47068 * 59.99605 * 3 2 1 33 33 H 1.09001 * 109.60991 * 333.18081 * 6 4 2 34 34 H 1.09003 * 109.61057 * 93.33171 * 6 4 2 35 35 H 0.97002 * 119.99830 * 336.06502 * 9 7 6 36 36 H 1.07998 * 119.78361 * 0.02562 * 11 10 9 37 37 H 1.08007 * 119.83454 * 180.28004 * 12 11 10 38 38 H 1.07997 * 120.05404 * 179.70386 * 13 12 11 39 39 H 0.96999 * 119.99761 * 179.97438 * 18 17 15 40 40 H 1.08006 * 120.15918 * 0.02562 * 23 10 9 41 41 H 1.08995 * 110.85753 * 199.70134 * 24 7 6 42 42 H 1.09003 * 110.85467 * 76.05880 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6258 -0.2629 2.1473 6 6 3.5819 -0.6970 1.2924 7 6 4.0831 -1.9953 1.9484 8 1 3.8759 -1.9760 3.0183 9 7 5.5222 -2.1489 1.7204 10 6 6.2880 -2.9276 2.5912 11 6 5.6834 -3.5532 3.6796 12 6 6.4323 -4.3320 4.5456 13 6 7.7859 -4.4875 4.3469 14 6 8.4116 -3.8570 3.2552 15 6 9.8012 -4.0126 3.0445 16 1 10.3508 -3.2643 2.4927 17 6 10.4642 -5.1358 3.5510 18 7 9.7815 -6.1952 3.9025 19 14 12.3239 -5.1232 3.7253 20 1 12.6918 -4.6086 5.0688 21 1 12.8457 -6.5041 3.5642 22 1 12.9130 -4.2465 2.6812 23 6 7.6463 -3.0714 2.3754 24 6 3.3130 -3.1646 1.2804 25 16 1.6064 -2.4987 1.1818 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9564 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.9751 -0.6239 0.2784 34 1 3.9182 0.1607 1.8750 35 1 5.9431 -1.7097 0.9648 36 1 4.6230 -3.4338 3.8459 37 1 5.9531 -4.8163 5.3837 38 1 8.3666 -5.0921 5.0279 39 1 10.2411 -6.9740 4.2533 40 1 8.1170 -2.5826 1.5351 41 1 3.3458 -4.0576 1.9045 42 1 3.7073 -3.3706 0.2853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449697215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:27 Heat of formation + Delta-G solvation = -1.039235 kcal Electronic energy + Delta-G solvation = -20468.252182 eV Core-core repulsion = 17537.804028 eV Total energy + Delta-G solvation = -2930.448154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.50862 -37.29124 -35.58117 -33.55578 -31.75100 -29.79875 -28.52244 -27.42535 -27.15404 -25.22083 -24.34013 -21.56629 -20.77276 -20.24040 -19.75036 -17.42555 -16.94904 -15.83605 -15.46944 -15.17588 -14.73927 -14.52621 -14.30815 -14.09607 -13.73109 -13.10070 -12.95283 -12.74557 -12.51459 -12.47221 -12.18417 -11.92983 -11.78784 -11.49792 -11.39229 -11.32757 -11.14797 -11.11931 -10.92366 -10.72008 -10.64805 -10.35757 -9.99825 -9.75866 -9.34585 -9.26068 -8.80038 -7.69003 -7.42403 -6.73756 -6.30411 -4.33909 1.79812 2.37982 2.83314 3.08621 3.11985 3.19047 3.32505 3.93493 4.00558 4.40274 4.55914 4.66941 4.78770 4.86327 4.90492 5.05158 5.17914 5.32149 5.37965 5.40625 5.57189 5.62205 5.67477 5.72951 5.79712 5.84836 5.95463 6.04817 6.07416 6.11743 6.28715 6.50751 6.97627 7.00099 7.09254 7.30277 7.33278 7.72071 7.86641 8.11033 8.20722 8.45662 8.52880 8.74911 8.96777 9.07774 10.22374 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.037271 B = 0.003015 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.077626 B = 9283.302946 C = 9725.460326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.147 4.147 4 C -0.031 4.031 5 H 0.099 0.901 6 C -0.133 4.133 7 C 0.159 3.841 8 H 0.091 0.909 9 N -0.750 5.750 10 C 0.221 3.779 11 C -0.301 4.301 12 C -0.075 4.075 13 C -0.197 4.197 14 C 0.141 3.859 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.077 3.923 18 N -0.791 5.791 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.286 4.286 24 C -0.083 4.083 25 S -0.298 6.298 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.389 0.611 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.279 0.721 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.521 10.183 -5.525 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.206 4.206 4 C -0.160 4.160 5 H 0.117 0.883 6 C -0.172 4.172 7 C 0.050 3.950 8 H 0.109 0.891 9 N -0.383 5.383 10 C 0.124 3.876 11 C -0.324 4.324 12 C -0.094 4.094 13 C -0.218 4.218 14 C 0.138 3.862 15 C -0.494 4.494 16 H 0.094 0.906 17 C -0.141 4.141 18 N -0.416 5.416 19 Si 0.731 3.269 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.310 4.310 24 C -0.233 4.233 25 S -0.071 6.071 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.223 0.777 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.697 9.314 -5.410 17.425 hybrid contribution 2.043 0.468 -0.131 2.100 sum -11.654 9.782 -5.541 16.193 Atomic orbital electron populations 1.21854 0.94675 1.02384 1.01626 1.21231 0.96316 0.95785 0.96571 1.21909 1.01397 0.95389 1.01936 1.23744 0.97231 0.93298 1.01719 0.88287 1.22583 0.93110 0.98916 1.02627 1.21700 0.82593 0.90562 1.00104 0.89068 1.44366 1.04695 1.57343 1.31904 1.17450 0.90204 0.90663 0.89302 1.19881 0.97769 1.12835 1.01930 1.20446 0.94601 0.97149 0.97170 1.21194 0.93453 1.06679 1.00447 1.17337 0.92564 0.87755 0.88544 1.19559 0.93360 1.05372 1.31091 0.90613 1.25900 1.00778 0.94555 0.92824 1.69864 1.38117 1.02548 1.31061 0.86346 0.82532 0.78231 0.79772 1.19299 1.20376 1.18695 1.20389 0.91281 1.14883 1.04464 1.24949 0.91139 1.02375 1.04821 1.87472 1.15596 1.06233 1.97752 0.92509 0.91846 0.92772 0.90309 0.92264 0.92393 0.92539 0.90354 0.89563 0.77727 0.89590 0.89601 0.86746 0.90983 0.89301 0.87710 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.05 37.15 0.34 -0.91 16 2 C -0.08 -0.69 2.37 -90.62 -0.21 -0.91 16 3 C -0.15 -1.09 8.94 37.16 0.33 -0.76 16 4 C -0.03 -0.32 2.81 -26.06 -0.07 -0.39 16 5 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 6 C -0.13 -1.45 4.29 -25.62 -0.11 -1.56 16 7 C 0.16 2.25 2.56 -66.36 -0.17 2.08 16 8 H 0.09 1.42 6.48 -51.93 -0.34 1.08 16 9 N -0.75 -12.60 5.30 -50.70 -0.27 -12.87 16 10 C 0.22 4.80 6.64 -83.86 -0.56 4.24 16 11 C -0.30 -6.68 9.22 -39.09 -0.36 -7.04 16 12 C -0.07 -1.77 10.01 -39.70 -0.40 -2.17 16 13 C -0.20 -5.20 8.69 -38.84 -0.34 -5.53 16 14 C 0.14 3.78 5.57 -106.85 -0.60 3.19 16 15 C -0.46 -12.39 9.05 -37.74 -0.34 -12.73 16 16 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 17 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 18 N -0.79 -20.64 10.96 55.55 0.61 -20.03 16 19 Si 0.91 18.76 29.59 -169.99 -5.03 13.72 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 23 C -0.29 -6.96 9.63 -38.68 -0.37 -7.33 16 24 C -0.08 -1.18 7.03 38.28 0.27 -0.91 16 25 S -0.30 -3.84 21.67 -107.50 -2.33 -6.17 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.61 7.28 -51.93 -0.38 0.23 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.44 7.06 -51.93 -0.37 0.08 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.81 7.60 -51.93 -0.39 0.42 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.39 5.93 8.60 -40.82 -0.35 5.58 16 36 H 0.09 1.73 6.22 -52.49 -0.33 1.40 16 37 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 38 H 0.11 3.12 6.15 -52.49 -0.32 2.79 16 39 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 40 H 0.09 2.05 8.06 -52.48 -0.42 1.63 16 41 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 42 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -27.29 344.83 -11.18 -38.47 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -6.68 Total: 10.55 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: -2.68 Total: -28.88 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.34 Total: -32.89 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.72 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -2.33 Total: -6.17 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.29 -11.18 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449697215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.427 kcal (2) G-P(sol) polarization free energy of solvation -27.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds