Wall clock time and date at job start Tue Mar 31 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47027 * 2 1 4 4 C 1.53005 * 109.47038 * 119.99648 * 2 1 3 5 5 H 1.08995 * 110.35693 * 304.12870 * 4 2 1 6 6 C 1.54276 * 110.40016 * 181.68320 * 4 2 1 7 7 C 1.53856 * 108.92311 * 213.25372 * 6 4 2 8 8 H 1.08996 * 109.97578 * 287.88883 * 7 6 4 9 9 N 1.46507 * 110.00253 * 166.63508 * 7 6 4 10 10 C 1.39684 * 119.99603 * 156.06247 * 9 7 6 11 11 C 1.39338 * 119.95531 * 359.72506 * 10 9 7 12 12 C 1.38472 * 120.42206 * 179.72164 * 11 10 9 13 13 C 1.37686 * 120.32942 * 0.55406 * 12 11 10 14 14 C 1.40748 * 119.89063 * 359.72432 * 13 12 11 15 15 C 1.41406 * 120.20915 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00028 * 204.44339 * 15 14 13 17 17 C 1.39926 * 120.00126 * 24.43534 * 15 14 13 18 18 N 1.30840 * 119.99773 * 17.89415 * 17 15 14 19 19 Si 1.86794 * 120.00503 * 197.89024 * 17 15 14 20 20 H 1.48494 * 109.47298 * 90.00030 * 19 17 15 21 21 H 1.48501 * 109.47383 * 210.00246 * 19 17 15 22 22 H 1.48507 * 109.47105 * 330.00406 * 19 17 15 23 23 C 1.38280 * 119.95054 * 180.02562 * 10 9 7 24 24 C 1.55129 * 106.90037 * 47.25758 * 7 6 4 25 25 S 1.83089 * 110.40099 * 66.45646 * 4 2 1 26 26 H 1.08996 * 109.47375 * 60.00489 * 1 2 3 27 27 H 1.08997 * 109.47219 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47447 * 300.00346 * 1 2 3 29 29 H 1.08995 * 109.47519 * 239.99881 * 2 1 3 30 30 H 1.09000 * 109.46687 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46812 * 299.99779 * 3 2 1 32 32 H 1.08995 * 109.47068 * 59.99605 * 3 2 1 33 33 H 1.09001 * 109.60991 * 333.18081 * 6 4 2 34 34 H 1.09003 * 109.61057 * 93.33171 * 6 4 2 35 35 H 0.97002 * 119.99830 * 336.06502 * 9 7 6 36 36 H 1.07998 * 119.78361 * 0.02562 * 11 10 9 37 37 H 1.08007 * 119.83454 * 180.28004 * 12 11 10 38 38 H 1.07997 * 120.05404 * 179.70386 * 13 12 11 39 39 H 0.96999 * 119.99761 * 179.97438 * 18 17 15 40 40 H 1.08006 * 120.15918 * 0.02562 * 23 10 9 41 41 H 1.08995 * 110.85753 * 199.70134 * 24 7 6 42 42 H 1.09003 * 110.85467 * 76.05880 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6258 -0.2629 2.1473 6 6 3.5819 -0.6970 1.2924 7 6 4.0831 -1.9953 1.9484 8 1 3.8759 -1.9760 3.0183 9 7 5.5222 -2.1489 1.7204 10 6 6.2880 -2.9276 2.5912 11 6 5.6834 -3.5532 3.6796 12 6 6.4323 -4.3320 4.5456 13 6 7.7859 -4.4875 4.3469 14 6 8.4116 -3.8570 3.2552 15 6 9.8012 -4.0126 3.0445 16 1 10.3508 -3.2643 2.4927 17 6 10.4642 -5.1358 3.5510 18 7 9.7815 -6.1952 3.9025 19 14 12.3239 -5.1232 3.7253 20 1 12.6918 -4.6086 5.0688 21 1 12.8457 -6.5041 3.5642 22 1 12.9130 -4.2465 2.6812 23 6 7.6463 -3.0714 2.3754 24 6 3.3130 -3.1646 1.2804 25 16 1.6064 -2.4987 1.1818 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9564 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.9751 -0.6239 0.2784 34 1 3.9182 0.1607 1.8750 35 1 5.9431 -1.7097 0.9648 36 1 4.6230 -3.4338 3.8459 37 1 5.9531 -4.8163 5.3837 38 1 8.3666 -5.0921 5.0279 39 1 10.2411 -6.9740 4.2533 40 1 8.1170 -2.5826 1.5351 41 1 3.3458 -4.0576 1.9045 42 1 3.7073 -3.3706 0.2853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449697215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:26 Heat of formation + Delta-G solvation = -13.295373 kcal Electronic energy + Delta-G solvation = -20468.783648 eV Core-core repulsion = 17537.804028 eV Total energy + Delta-G solvation = -2930.979620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.98337 -38.54204 -36.84657 -35.27345 -33.16827 -31.68780 -29.65179 -28.71776 -28.02259 -27.13117 -25.36913 -23.09002 -22.42622 -21.27449 -21.06857 -19.20630 -17.97201 -17.47019 -16.80959 -16.69780 -16.25863 -15.86708 -15.35270 -15.08278 -14.84499 -14.51892 -14.31668 -14.18982 -13.97180 -13.60154 -13.42393 -13.15739 -12.95380 -12.80170 -12.74320 -12.65175 -12.37228 -12.26035 -12.11136 -12.02103 -11.70135 -11.62058 -11.56489 -11.21370 -11.11807 -10.91179 -10.46219 -9.35299 -8.72248 -8.61699 -8.00560 -6.33165 0.78514 1.03649 1.28728 1.38399 1.41161 1.52128 1.59186 2.22219 2.68131 2.79512 3.53157 3.60627 3.79320 3.89757 3.91805 4.01429 4.13092 4.38869 4.40758 4.48831 4.54614 4.66349 4.69641 4.76809 4.83994 4.90904 4.95562 5.03177 5.08418 5.13694 5.16017 5.22994 5.25507 5.40040 5.43207 5.46154 5.56397 5.90871 5.99829 6.18887 6.29361 6.59707 6.86482 6.98576 7.01604 7.21673 8.36565 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.037271 B = 0.003015 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.077626 B = 9283.302946 C = 9725.460326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.144 4.144 4 C -0.020 4.020 5 H 0.108 0.892 6 C -0.124 4.124 7 C 0.158 3.842 8 H 0.081 0.919 9 N -0.738 5.738 10 C 0.235 3.765 11 C -0.301 4.301 12 C -0.076 4.076 13 C -0.231 4.231 14 C 0.112 3.888 15 C -0.501 4.501 16 H 0.073 0.927 17 C 0.035 3.965 18 N -0.824 5.824 19 Si 0.982 3.018 20 H -0.262 1.262 21 H -0.268 1.268 22 H -0.258 1.258 23 C -0.306 4.306 24 C -0.081 4.081 25 S -0.314 6.314 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.399 0.601 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.287 0.713 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.347 11.949 -6.212 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 C -0.203 4.203 4 C -0.148 4.148 5 H 0.126 0.874 6 C -0.162 4.162 7 C 0.050 3.950 8 H 0.099 0.901 9 N -0.370 5.370 10 C 0.135 3.865 11 C -0.324 4.324 12 C -0.095 4.095 13 C -0.251 4.251 14 C 0.110 3.890 15 C -0.531 4.531 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.450 5.450 19 Si 0.803 3.197 20 H -0.187 1.187 21 H -0.193 1.193 22 H -0.182 1.182 23 C -0.330 4.330 24 C -0.232 4.232 25 S -0.086 6.086 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.234 0.766 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.569 11.105 -6.124 19.316 hybrid contribution 2.087 -0.021 0.039 2.087 sum -12.482 11.084 -6.085 17.768 Atomic orbital electron populations 1.21838 0.94343 1.01635 1.02556 1.21212 0.96550 0.96471 0.95309 1.21889 1.01456 0.94204 1.02772 1.23868 0.96692 0.91181 1.03107 0.87378 1.22510 0.93391 0.97268 1.03081 1.21851 0.80729 0.92421 0.99974 0.90054 1.44352 1.05690 1.55905 1.31076 1.17453 0.89748 0.89940 0.89409 1.20145 0.98782 1.11979 1.01493 1.20719 0.93889 0.96971 0.97949 1.21117 0.94579 1.08388 1.01057 1.17697 0.93332 0.88710 0.89307 1.19813 0.94018 1.06356 1.32897 0.90855 1.26769 1.05744 0.93608 0.91843 1.69925 1.40251 1.03214 1.31565 0.85216 0.76075 0.78633 0.79823 1.18717 1.19280 1.18182 1.20512 0.92525 1.15383 1.04624 1.24775 0.92368 1.01768 1.04243 1.87592 1.14445 1.08793 1.97777 0.91296 0.93374 0.92203 0.90913 0.92135 0.91427 0.91927 0.89318 0.88141 0.76563 0.87262 0.87653 0.88676 0.90286 0.88854 0.89501 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.05 71.98 0.65 -1.44 16 2 C -0.08 -1.11 2.37 -10.79 -0.03 -1.13 16 3 C -0.14 -1.65 8.94 71.98 0.64 -1.00 16 4 C -0.02 -0.35 2.81 31.03 0.09 -0.27 16 5 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 6 C -0.12 -2.33 4.29 31.32 0.13 -2.20 16 7 C 0.16 4.16 2.56 46.01 0.12 4.27 16 8 H 0.08 2.35 6.48 -2.39 -0.02 2.34 16 9 N -0.74 -23.60 5.30 -314.31 -1.67 -25.27 16 10 C 0.24 10.05 6.64 38.16 0.25 10.31 16 11 C -0.30 -13.15 9.22 22.59 0.21 -12.94 16 12 C -0.08 -3.66 10.01 22.20 0.22 -3.44 16 13 C -0.23 -12.59 8.69 22.75 0.20 -12.39 16 14 C 0.11 6.24 5.57 -21.31 -0.12 6.12 16 15 C -0.50 -27.70 9.05 23.46 0.21 -27.49 16 16 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 17 C 0.04 1.82 5.14 85.25 0.44 2.26 16 18 N -0.82 -44.32 10.96 21.82 0.24 -44.08 16 19 Si 0.98 38.94 29.59 68.60 2.03 40.97 16 20 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 23 C -0.31 -15.12 9.63 22.86 0.22 -14.90 16 24 C -0.08 -2.22 7.03 72.71 0.51 -1.71 16 25 S -0.31 -7.59 21.67 -56.49 -1.22 -8.82 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.84 7.28 -2.39 -0.02 0.82 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 0.69 7.06 -2.39 -0.02 0.67 16 31 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 1.54 7.60 -2.39 -0.02 1.52 16 34 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.40 11.39 8.60 -92.71 -0.80 10.59 16 36 H 0.11 4.22 6.22 -2.91 -0.02 4.20 16 37 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.10 5.45 6.15 -2.91 -0.02 5.43 16 39 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 40 H 0.09 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -60.48 344.83 3.34 -57.15 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: 0.21 Total: 36.00 kcal Atomic # 6 Polarization: -59.70 SS G_CDS: 3.75 Total: -55.94 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -1.43 Total: -69.35 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 16 Polarization: -7.59 SS G_CDS: -1.22 Total: -8.82 kcal Total: -60.48 3.34 -57.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449697215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.850 kcal (2) G-P(sol) polarization free energy of solvation -60.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds