Wall clock time and date at job start Tue Mar 31 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47310 * 2 1 4 4 C 1.53001 * 109.46666 * 120.00392 * 2 1 3 5 5 H 1.08997 * 110.30741 * 60.71544 * 4 2 1 6 6 C 1.53708 * 110.33850 * 183.00028 * 4 2 1 7 7 C 1.52979 * 112.51743 * 116.08326 * 6 4 2 8 8 H 1.09004 * 109.57870 * 270.12150 * 7 6 4 9 9 N 1.46501 * 109.64819 * 149.97260 * 7 6 4 10 10 C 1.39683 * 120.00301 * 154.00496 * 9 7 6 11 11 C 1.39346 * 119.94788 * 359.72532 * 10 9 7 12 12 C 1.38475 * 120.41831 * 179.71891 * 11 10 9 13 13 C 1.37687 * 120.32873 * 0.55553 * 12 11 10 14 14 C 1.40752 * 119.89125 * 359.72349 * 13 12 11 15 15 C 1.41407 * 120.20353 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99720 * 204.43350 * 15 14 13 17 17 C 1.39928 * 120.00587 * 24.42919 * 15 14 13 18 18 N 1.30832 * 119.99299 * 17.90277 * 17 15 14 19 19 Si 1.86801 * 120.00405 * 197.89903 * 17 15 14 20 20 H 1.48500 * 109.46736 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46957 * 120.00407 * 19 17 15 22 22 H 1.48503 * 109.46894 * 240.00430 * 19 17 15 23 23 C 1.38269 * 119.95434 * 179.97438 * 10 9 7 24 24 C 1.55152 * 108.94294 * 30.02684 * 7 6 4 25 25 S 1.83394 * 110.34142 * 298.54080 * 4 2 1 26 26 H 1.09002 * 109.46558 * 300.00487 * 1 2 3 27 27 H 1.09003 * 109.46824 * 59.99672 * 1 2 3 28 28 H 1.08997 * 109.47421 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46558 * 239.99513 * 2 1 3 30 30 H 1.08997 * 109.46966 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47315 * 299.99872 * 3 2 1 32 32 H 1.08998 * 109.46817 * 60.00207 * 3 2 1 33 33 H 1.09004 * 108.88456 * 236.83978 * 6 4 2 34 34 H 1.09003 * 108.88633 * 355.24633 * 6 4 2 35 35 H 0.97001 * 119.99772 * 334.01025 * 9 7 6 36 36 H 1.08002 * 119.78468 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.83069 * 180.27763 * 12 11 10 38 38 H 1.07999 * 120.05477 * 179.70144 * 13 12 11 39 39 H 0.97005 * 119.99255 * 179.97438 * 18 17 15 40 40 H 1.08007 * 120.16329 * 0.02565 * 23 10 9 41 41 H 1.08997 * 111.13028 * 200.69432 * 24 7 6 42 42 H 1.08994 * 111.12999 * 76.55571 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6946 -1.7551 1.2566 6 6 3.5750 -0.6681 1.3078 7 6 4.0883 0.1184 2.5154 8 1 4.2001 1.1688 2.2465 9 7 5.3846 -0.4177 2.9376 10 6 6.2926 0.4010 3.6131 11 6 5.9665 1.7293 3.8798 12 6 6.8569 2.5480 4.5540 13 6 8.0797 2.0612 4.9583 14 6 8.4253 0.7232 4.6908 15 6 9.6792 0.2162 5.1036 16 1 10.1151 -0.6288 4.5913 17 6 10.3553 0.8093 6.1756 18 7 9.7078 1.5803 7.0111 19 14 12.1820 0.5001 6.4138 20 1 12.6756 -0.4004 5.3411 21 1 12.9145 1.7903 6.3525 22 1 12.4081 -0.1351 7.7369 23 6 7.5156 -0.1062 4.0116 24 6 3.0666 -0.0161 3.6753 25 16 1.4778 0.1493 2.7622 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 3.9616 -1.6859 1.3603 34 1 3.9468 -0.1990 0.3968 35 1 5.6125 -1.3413 2.7480 36 1 5.0113 2.1213 3.5631 37 1 6.5926 3.5748 4.7596 38 1 8.7727 2.7050 5.4795 39 1 10.1765 1.9911 7.7544 40 1 7.7712 -1.1343 3.8016 41 1 3.1882 0.7879 4.4012 42 1 3.1439 -0.9913 4.1559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449697217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:39 Heat of formation + Delta-G solvation = 4.115469 kcal Electronic energy + Delta-G solvation = -20666.973775 eV Core-core repulsion = 17736.749145 eV Total energy + Delta-G solvation = -2930.224629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.56510 -37.30458 -35.51737 -33.52548 -31.67793 -29.79842 -28.54728 -27.31696 -27.16542 -25.21225 -24.48231 -21.53186 -20.70279 -20.21165 -19.72784 -17.49235 -16.54429 -15.97929 -15.42726 -15.16675 -14.92221 -14.55938 -14.52760 -13.89995 -13.67150 -13.10409 -12.83679 -12.74988 -12.39806 -12.22208 -12.10969 -11.99479 -11.74151 -11.59068 -11.28129 -11.21924 -11.14149 -11.04347 -10.90412 -10.69283 -10.63937 -10.33685 -9.94358 -9.74298 -9.35210 -9.24644 -8.79251 -7.64141 -7.41697 -6.73534 -6.29117 -4.33349 1.83399 2.34299 2.82501 3.08980 3.14412 3.19155 3.32507 3.94653 4.05411 4.42373 4.53295 4.68529 4.81817 4.88026 4.93919 5.13630 5.23471 5.31734 5.43861 5.55327 5.56972 5.70397 5.78610 5.80487 5.83032 5.89933 5.98595 6.09963 6.14894 6.29652 6.30740 6.51758 6.99231 7.00718 7.09587 7.30936 7.34020 7.73153 7.87442 8.11700 8.21451 8.46443 8.54042 8.75596 8.97367 9.08409 10.22541 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.040468 B = 0.003073 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.743931 B = 9110.406588 C = 9232.528787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.078 4.078 3 C -0.156 4.156 4 C -0.030 4.030 5 H 0.093 0.907 6 C -0.136 4.136 7 C 0.163 3.837 8 H 0.092 0.908 9 N -0.752 5.752 10 C 0.222 3.778 11 C -0.302 4.302 12 C -0.075 4.075 13 C -0.198 4.198 14 C 0.141 3.859 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.077 3.923 18 N -0.791 5.791 19 Si 0.905 3.095 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.287 4.287 24 C -0.081 4.081 25 S -0.292 6.292 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.388 0.612 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.279 0.721 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.577 -2.908 -10.381 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 C -0.214 4.214 4 C -0.159 4.159 5 H 0.112 0.888 6 C -0.175 4.175 7 C 0.054 3.946 8 H 0.110 0.890 9 N -0.386 5.386 10 C 0.124 3.876 11 C -0.324 4.324 12 C -0.094 4.094 13 C -0.218 4.218 14 C 0.138 3.862 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.141 4.141 18 N -0.416 5.416 19 Si 0.730 3.270 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.201 1.201 23 C -0.311 4.311 24 C -0.231 4.231 25 S -0.066 6.066 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.222 0.778 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.132 0.868 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.727 -2.136 -9.867 17.039 hybrid contribution 1.926 -1.077 0.005 2.207 sum -11.801 -3.214 -9.862 15.711 Atomic orbital electron populations 1.21860 0.94765 1.01744 1.02228 1.21093 0.96149 0.96994 0.95574 1.22029 1.01391 0.95285 1.02663 1.23726 0.96511 1.01059 0.94589 0.88834 1.22292 0.93346 1.01921 0.99959 1.21542 0.83728 0.99313 0.90013 0.89015 1.44526 1.15098 1.12927 1.66017 1.17452 0.88666 0.89850 0.91636 1.19888 1.01710 0.93818 1.17021 1.20446 0.94619 0.96965 0.97337 1.21190 0.97108 0.96210 1.07282 1.17341 0.91097 0.90609 0.87161 1.19580 1.02585 1.14049 1.13128 0.90611 1.25898 1.00104 0.93386 0.94663 1.69872 1.37186 1.24214 1.10306 0.86318 0.82620 0.79190 0.78902 1.18460 1.19730 1.20067 1.20389 0.94856 0.98849 1.16967 1.25066 0.91339 1.05947 1.00783 1.87657 1.23965 1.77274 1.17658 0.91795 0.92467 0.92829 0.90467 0.92330 0.92905 0.90697 0.90876 0.89535 0.77827 0.89553 0.89618 0.86765 0.91051 0.89332 0.87421 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.99 37.16 0.33 -0.94 16 2 C -0.08 -0.71 2.65 -90.62 -0.24 -0.95 16 3 C -0.16 -1.52 8.65 37.16 0.32 -1.20 16 4 C -0.03 -0.31 3.16 -26.36 -0.08 -0.39 16 5 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 6 C -0.14 -1.50 5.09 -26.37 -0.13 -1.64 16 7 C 0.16 2.29 2.54 -66.80 -0.17 2.12 16 8 H 0.09 1.42 6.39 -51.93 -0.33 1.09 16 9 N -0.75 -12.64 5.26 -51.12 -0.27 -12.91 16 10 C 0.22 4.79 6.64 -83.86 -0.56 4.24 16 11 C -0.30 -6.66 9.22 -39.08 -0.36 -7.02 16 12 C -0.07 -1.77 10.01 -39.70 -0.40 -2.17 16 13 C -0.20 -5.20 8.69 -38.83 -0.34 -5.53 16 14 C 0.14 3.78 5.57 -106.85 -0.60 3.18 16 15 C -0.46 -12.39 9.05 -37.74 -0.34 -12.73 16 16 H 0.08 1.96 7.91 -52.48 -0.42 1.54 16 17 C 0.08 1.96 5.14 -17.35 -0.09 1.87 16 18 N -0.79 -20.62 10.96 55.55 0.61 -20.01 16 19 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 20 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 C -0.29 -6.98 9.63 -38.68 -0.37 -7.35 16 24 C -0.08 -1.14 7.15 38.30 0.27 -0.87 16 25 S -0.29 -3.68 19.88 -107.50 -2.14 -5.82 16 26 H 0.06 0.63 7.05 -51.93 -0.37 0.26 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.60 6.41 -51.93 -0.33 0.26 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.82 6.93 -51.93 -0.36 0.47 16 33 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 34 H 0.09 0.92 6.27 -51.93 -0.33 0.59 16 35 H 0.39 5.94 8.32 -40.82 -0.34 5.60 16 36 H 0.09 1.73 6.19 -52.49 -0.33 1.40 16 37 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 38 H 0.11 3.11 6.15 -52.49 -0.32 2.79 16 39 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 40 H 0.09 2.05 8.06 -52.48 -0.42 1.63 16 41 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 339.91 15.07 5.12 5.12 Total: -1.00 -27.21 339.91 -10.91 -38.13 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.46 Total: 11.15 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -2.75 Total: -29.37 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.34 Total: -32.92 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -2.14 Total: -5.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.21 -10.91 -38.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449697217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.241 kcal (2) G-P(sol) polarization free energy of solvation -27.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds