Wall clock time and date at job start Tue Mar 31 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47310 * 2 1 4 4 C 1.53001 * 109.46666 * 120.00392 * 2 1 3 5 5 H 1.08997 * 110.30741 * 60.71544 * 4 2 1 6 6 C 1.53708 * 110.33850 * 183.00028 * 4 2 1 7 7 C 1.52979 * 112.51743 * 116.08326 * 6 4 2 8 8 H 1.09004 * 109.57870 * 270.12150 * 7 6 4 9 9 N 1.46501 * 109.64819 * 149.97260 * 7 6 4 10 10 C 1.39683 * 120.00301 * 154.00496 * 9 7 6 11 11 C 1.39346 * 119.94788 * 359.72532 * 10 9 7 12 12 C 1.38475 * 120.41831 * 179.71891 * 11 10 9 13 13 C 1.37687 * 120.32873 * 0.55553 * 12 11 10 14 14 C 1.40752 * 119.89125 * 359.72349 * 13 12 11 15 15 C 1.41407 * 120.20353 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99720 * 204.43350 * 15 14 13 17 17 C 1.39928 * 120.00587 * 24.42919 * 15 14 13 18 18 N 1.30832 * 119.99299 * 17.90277 * 17 15 14 19 19 Si 1.86801 * 120.00405 * 197.89903 * 17 15 14 20 20 H 1.48500 * 109.46736 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46957 * 120.00407 * 19 17 15 22 22 H 1.48503 * 109.46894 * 240.00430 * 19 17 15 23 23 C 1.38269 * 119.95434 * 179.97438 * 10 9 7 24 24 C 1.55152 * 108.94294 * 30.02684 * 7 6 4 25 25 S 1.83394 * 110.34142 * 298.54080 * 4 2 1 26 26 H 1.09002 * 109.46558 * 300.00487 * 1 2 3 27 27 H 1.09003 * 109.46824 * 59.99672 * 1 2 3 28 28 H 1.08997 * 109.47421 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46558 * 239.99513 * 2 1 3 30 30 H 1.08997 * 109.46966 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47315 * 299.99872 * 3 2 1 32 32 H 1.08998 * 109.46817 * 60.00207 * 3 2 1 33 33 H 1.09004 * 108.88456 * 236.83978 * 6 4 2 34 34 H 1.09003 * 108.88633 * 355.24633 * 6 4 2 35 35 H 0.97001 * 119.99772 * 334.01025 * 9 7 6 36 36 H 1.08002 * 119.78468 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.83069 * 180.27763 * 12 11 10 38 38 H 1.07999 * 120.05477 * 179.70144 * 13 12 11 39 39 H 0.97005 * 119.99255 * 179.97438 * 18 17 15 40 40 H 1.08007 * 120.16329 * 0.02565 * 23 10 9 41 41 H 1.08997 * 111.13028 * 200.69432 * 24 7 6 42 42 H 1.08994 * 111.12999 * 76.55571 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6946 -1.7551 1.2566 6 6 3.5750 -0.6681 1.3078 7 6 4.0883 0.1184 2.5154 8 1 4.2001 1.1688 2.2465 9 7 5.3846 -0.4177 2.9376 10 6 6.2926 0.4010 3.6131 11 6 5.9665 1.7293 3.8798 12 6 6.8569 2.5480 4.5540 13 6 8.0797 2.0612 4.9583 14 6 8.4253 0.7232 4.6908 15 6 9.6792 0.2162 5.1036 16 1 10.1151 -0.6288 4.5913 17 6 10.3553 0.8093 6.1756 18 7 9.7078 1.5803 7.0111 19 14 12.1820 0.5001 6.4138 20 1 12.6756 -0.4004 5.3411 21 1 12.9145 1.7903 6.3525 22 1 12.4081 -0.1351 7.7369 23 6 7.5156 -0.1062 4.0116 24 6 3.0666 -0.0161 3.6753 25 16 1.4778 0.1493 2.7622 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 3.9616 -1.6859 1.3603 34 1 3.9468 -0.1990 0.3968 35 1 5.6125 -1.3413 2.7480 36 1 5.0113 2.1213 3.5631 37 1 6.5926 3.5748 4.7596 38 1 8.7727 2.7050 5.4795 39 1 10.1765 1.9911 7.7544 40 1 7.7712 -1.1343 3.8016 41 1 3.1882 0.7879 4.4012 42 1 3.1439 -0.9913 4.1559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449697217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:37 Heat of formation + Delta-G solvation = -8.208382 kcal Electronic energy + Delta-G solvation = -20667.508177 eV Core-core repulsion = 17736.749145 eV Total energy + Delta-G solvation = -2930.759032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.01094 -38.59669 -36.81252 -35.24675 -33.08610 -31.68524 -29.67096 -28.71918 -28.04224 -27.12266 -25.52961 -23.04623 -22.39433 -21.32580 -20.94362 -19.26247 -17.63953 -17.55782 -16.85910 -16.41279 -16.28620 -16.02061 -15.71255 -15.03985 -14.88068 -14.53753 -14.29023 -14.11542 -13.95684 -13.56855 -13.28412 -13.10230 -12.83616 -12.80269 -12.77693 -12.64546 -12.44442 -12.24553 -12.02941 -11.95998 -11.72070 -11.62411 -11.51065 -11.21359 -11.09095 -10.86234 -10.43556 -9.34619 -8.64933 -8.61331 -7.98810 -6.32702 0.83917 1.03597 1.28623 1.37958 1.40216 1.53898 1.58356 2.22445 2.71173 2.79897 3.52817 3.68491 3.78114 3.86210 3.96538 4.07498 4.16323 4.29106 4.46782 4.49325 4.63053 4.65363 4.70197 4.81089 4.86305 4.89882 4.99965 5.09520 5.11711 5.14413 5.16463 5.22342 5.26265 5.40756 5.43923 5.54770 5.57218 5.92068 6.00591 6.19554 6.30075 6.60482 6.87356 6.99711 7.02184 7.22453 8.36840 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.040468 B = 0.003073 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.743931 B = 9110.406588 C = 9232.528787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.156 4.156 4 C -0.020 4.020 5 H 0.108 0.892 6 C -0.130 4.130 7 C 0.164 3.836 8 H 0.080 0.920 9 N -0.741 5.741 10 C 0.235 3.765 11 C -0.301 4.301 12 C -0.076 4.076 13 C -0.231 4.231 14 C 0.112 3.888 15 C -0.501 4.501 16 H 0.073 0.927 17 C 0.035 3.965 18 N -0.824 5.824 19 Si 0.981 3.019 20 H -0.258 1.258 21 H -0.265 1.265 22 H -0.266 1.266 23 C -0.307 4.307 24 C -0.082 4.082 25 S -0.303 6.303 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.398 0.602 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.286 0.714 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.517 -3.857 -12.052 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 C -0.213 4.213 4 C -0.148 4.148 5 H 0.127 0.873 6 C -0.169 4.169 7 C 0.056 3.944 8 H 0.098 0.902 9 N -0.373 5.373 10 C 0.135 3.865 11 C -0.324 4.324 12 C -0.095 4.095 13 C -0.251 4.251 14 C 0.110 3.890 15 C -0.531 4.531 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.449 5.449 19 Si 0.802 3.198 20 H -0.182 1.182 21 H -0.189 1.189 22 H -0.191 1.191 23 C -0.331 4.331 24 C -0.232 4.232 25 S -0.076 6.076 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.233 0.767 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.717 -3.104 -11.561 18.971 hybrid contribution 2.010 -0.779 0.439 2.199 sum -12.708 -3.883 -11.123 17.329 Atomic orbital electron populations 1.21837 0.94353 1.02211 1.01979 1.21133 0.96444 0.96451 0.95534 1.22010 1.00987 0.95878 1.02452 1.23854 0.95654 1.01675 0.93648 0.87337 1.22215 0.93917 1.02178 0.98547 1.21677 0.82303 0.99150 0.91276 0.90200 1.44535 1.15260 1.12921 1.64606 1.17455 0.88458 0.90182 0.90429 1.20152 1.02192 0.93903 1.16139 1.20718 0.93929 0.98205 0.96664 1.21109 0.98258 0.96274 1.09488 1.17697 0.91998 0.91284 0.88063 1.19826 1.03708 1.15087 1.14447 0.90917 1.26763 1.04665 0.92769 0.93753 1.69930 1.39160 1.24994 1.10855 0.85184 0.76341 0.79277 0.79023 1.18173 1.18916 1.19062 1.20512 0.95838 0.99000 1.17772 1.24896 0.92577 1.05186 1.00562 1.87781 1.22845 1.77964 1.19046 0.93443 0.91323 0.92015 0.88404 0.92877 0.91744 0.92346 0.89536 0.88525 0.76683 0.87233 0.87668 0.88700 0.90304 0.88919 0.89193 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.99 71.98 0.65 -1.44 16 2 C -0.08 -1.12 2.65 -10.79 -0.03 -1.15 16 3 C -0.16 -2.66 8.65 71.98 0.62 -2.03 16 4 C -0.02 -0.34 3.16 30.83 0.10 -0.25 16 5 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 6 C -0.13 -2.47 5.09 30.83 0.16 -2.32 16 7 C 0.16 4.31 2.54 45.72 0.12 4.43 16 8 H 0.08 2.34 6.39 -2.38 -0.02 2.32 16 9 N -0.74 -23.76 5.26 -315.66 -1.66 -25.42 16 10 C 0.24 10.08 6.64 38.16 0.25 10.33 16 11 C -0.30 -13.14 9.22 22.59 0.21 -12.94 16 12 C -0.08 -3.66 10.01 22.20 0.22 -3.43 16 13 C -0.23 -12.58 8.69 22.75 0.20 -12.39 16 14 C 0.11 6.25 5.57 -21.31 -0.12 6.13 16 15 C -0.50 -27.74 9.05 23.46 0.21 -27.53 16 16 H 0.07 3.89 7.91 -2.91 -0.02 3.87 16 17 C 0.04 1.83 5.14 85.25 0.44 2.27 16 18 N -0.82 -44.30 10.96 21.82 0.24 -44.06 16 19 Si 0.98 38.98 29.60 68.60 2.03 41.01 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 22 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 23 C -0.31 -15.19 9.63 22.85 0.22 -14.97 16 24 C -0.08 -2.22 7.15 72.72 0.52 -1.70 16 25 S -0.30 -7.14 19.88 -56.49 -1.12 -8.26 16 26 H 0.05 0.84 7.05 -2.39 -0.02 0.82 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.05 0.96 6.41 -2.39 -0.02 0.94 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.19 6.93 -2.39 -0.02 1.18 16 33 H 0.09 1.48 7.68 -2.38 -0.02 1.46 16 34 H 0.10 1.72 6.27 -2.39 -0.01 1.70 16 35 H 0.40 11.40 8.32 -92.71 -0.77 10.63 16 36 H 0.11 4.23 6.19 -2.91 -0.02 4.22 16 37 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.09 5.44 6.15 -2.91 -0.02 5.42 16 39 H 0.29 13.87 8.30 -92.70 -0.77 13.10 16 40 H 0.09 4.37 8.06 -2.91 -0.02 4.34 16 41 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.09 2.36 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -60.49 339.91 3.49 -57.00 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: 0.24 Total: 36.72 kcal Atomic # 6 Polarization: -60.75 SS G_CDS: 3.77 Total: -56.99 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -1.42 Total: -69.48 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Atomic # 16 Polarization: -7.14 SS G_CDS: -1.12 Total: -8.26 kcal Total: -60.49 3.49 -57.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449697217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.790 kcal (2) G-P(sol) polarization free energy of solvation -60.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds