Wall clock time and date at job start Tue Mar 31 2020 06:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47217 * 2 1 4 4 N 1.46504 * 109.46925 * 240.00059 * 2 1 3 5 5 C 1.39690 * 119.99796 * 84.99770 * 4 2 1 6 6 C 1.39330 * 119.94923 * 0.02562 * 5 4 2 7 7 C 1.38487 * 120.42139 * 179.97438 * 6 5 4 8 8 C 1.37686 * 120.32319 * 0.24907 * 7 6 5 9 9 C 1.40758 * 119.89557 * 359.50045 * 8 7 6 10 10 C 1.41399 * 120.20775 * 180.24982 * 9 8 7 11 11 H 1.07997 * 120.00692 * 330.46001 * 10 9 8 12 12 C 1.39931 * 119.99739 * 150.45491 * 10 9 8 13 13 N 1.30835 * 120.00269 * 161.72262 * 12 10 9 14 14 Si 1.86806 * 119.99959 * 341.72250 * 12 10 9 15 15 H 1.48501 * 109.46666 * 95.41143 * 14 12 10 16 16 H 1.48500 * 109.47098 * 215.40945 * 14 12 10 17 17 H 1.48495 * 109.47082 * 335.41266 * 14 12 10 18 18 C 1.38273 * 119.94916 * 179.97438 * 5 4 2 19 19 C 1.52991 * 109.47222 * 120.00268 * 2 1 3 20 20 C 1.52581 * 109.22835 * 60.59418 * 19 2 1 21 21 C 1.53122 * 109.94601 * 168.96193 * 20 19 2 22 22 S 1.81741 * 108.80814 * 63.09057 * 21 20 19 23 23 C 1.81753 * 102.22088 * 306.71273 * 22 21 20 24 24 C 1.52587 * 109.22724 * 299.39877 * 19 2 1 25 25 H 1.08996 * 109.47217 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46894 * 300.00067 * 1 2 3 27 27 H 1.09003 * 109.47139 * 59.99727 * 1 2 3 28 28 H 0.96994 * 120.00245 * 265.00014 * 4 2 1 29 29 H 1.08001 * 119.79490 * 359.94689 * 6 5 4 30 30 H 1.07992 * 119.83899 * 179.97438 * 7 6 5 31 31 H 1.08000 * 120.05215 * 179.72207 * 8 7 6 32 32 H 0.96997 * 119.99994 * 179.97438 * 13 12 10 33 33 H 1.07999 * 120.16471 * 0.02562 * 18 5 4 34 34 H 1.09004 * 109.22233 * 179.97438 * 19 2 1 35 35 H 1.08998 * 109.39147 * 289.15378 * 20 19 2 36 36 H 1.08999 * 109.38686 * 48.85726 * 20 19 2 37 37 H 1.08992 * 109.60741 * 303.27683 * 21 20 19 38 38 H 1.08999 * 109.67727 * 182.93954 * 21 20 19 39 39 H 1.09005 * 109.57164 * 293.45924 * 23 22 21 40 40 H 1.09002 * 109.68389 * 173.13864 * 23 22 21 41 41 H 1.08994 * 109.39073 * 311.14644 * 24 19 2 42 42 H 1.09003 * 109.38676 * 70.94991 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1517 0.0063 -2.3995 6 6 1.8205 1.3583 -2.4607 7 6 1.9494 2.0588 -3.6483 8 6 2.4018 1.4248 -4.7837 9 6 2.7453 0.0606 -4.7359 10 6 3.2156 -0.5957 -5.8967 11 1 2.8902 -0.2667 -6.8725 12 6 4.1029 -1.6716 -5.7810 13 7 4.2625 -2.4985 -6.7823 14 14 5.0597 -1.9271 -4.1971 15 1 4.3397 -2.8988 -3.3353 16 1 6.4114 -2.4537 -4.5147 17 1 5.1884 -0.6320 -3.4821 18 6 2.6131 -0.6464 -3.5278 19 6 2.0400 -0.7213 1.2491 20 6 1.5406 -2.1630 1.2360 21 6 2.2561 -2.9735 2.3204 22 16 1.8335 -2.2788 3.9458 23 6 2.2551 -0.5234 3.7354 24 6 1.5407 0.0110 2.4912 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2490 -1.6317 -1.1527 29 1 1.4605 1.8631 -1.5764 30 1 1.6896 3.1063 -3.6852 31 1 2.4964 1.9742 -5.7087 32 1 4.8778 -3.2440 -6.7022 33 1 2.8705 -1.6942 -3.4814 34 1 3.1301 -0.7193 1.2448 35 1 0.4669 -2.1757 1.4229 36 1 1.7421 -2.6068 0.2611 37 1 3.3338 -2.9170 2.1680 38 1 1.9346 -4.0139 2.2731 39 1 3.3330 -0.4192 3.6107 40 1 1.9327 0.0392 4.6116 41 1 1.7422 1.0772 2.3882 42 1 0.4672 -0.1460 2.5967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449706023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:44 Heat of formation + Delta-G solvation = 2.131629 kcal Electronic energy + Delta-G solvation = -21201.000287 eV Core-core repulsion = 18270.689631 eV Total energy + Delta-G solvation = -2930.310655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -39.24454 -37.57480 -34.66293 -33.27412 -31.82463 -30.83722 -30.22961 -27.37421 -26.71959 -25.11021 -23.44079 -22.73225 -21.48785 -20.13547 -19.20874 -17.29708 -17.10713 -16.57699 -15.60031 -14.95631 -14.86547 -14.68081 -14.33379 -14.17242 -13.86174 -13.40544 -13.15491 -13.04094 -12.88751 -12.60569 -12.44000 -12.28034 -12.08882 -11.87510 -11.55031 -11.32355 -10.94301 -10.82409 -10.75680 -10.62719 -10.45885 -10.27928 -9.88573 -9.75055 -9.66101 -9.23760 -8.94182 -7.92295 -7.54875 -6.89786 -6.48237 -4.44727 1.54431 2.29088 2.73903 2.86495 3.12372 3.27439 3.36904 3.94485 4.03386 4.37962 4.43444 4.60077 4.61839 4.72543 4.94292 4.96746 5.17342 5.29113 5.31644 5.43529 5.50666 5.52589 5.59885 5.67488 5.75824 5.79623 5.92954 6.05451 6.08262 6.09496 6.30996 6.46126 6.65027 6.76386 6.85606 7.11487 7.20186 7.53411 7.78204 7.82538 8.04484 8.30725 8.41758 8.51331 8.81422 8.89694 10.13371 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.004339 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.735633 B = 6452.001886 C = 7424.168525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.164 3.836 3 H 0.078 0.922 4 N -0.757 5.757 5 C 0.243 3.757 6 C -0.303 4.303 7 C -0.054 4.054 8 C -0.246 4.246 9 C 0.125 3.875 10 C -0.450 4.450 11 H 0.089 0.911 12 C 0.085 3.915 13 N -0.814 5.814 14 Si 0.918 3.082 15 H -0.276 1.276 16 H -0.296 1.296 17 H -0.245 1.245 18 C -0.303 4.303 19 C -0.103 4.103 20 C -0.118 4.118 21 C -0.079 4.079 22 S -0.276 6.276 23 C -0.079 4.079 24 C -0.114 4.114 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.387 0.613 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.283 0.717 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.575 1.326 18.625 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.095 0.905 4 N -0.390 5.390 5 C 0.143 3.857 6 C -0.326 4.326 7 C -0.073 4.073 8 C -0.266 4.266 9 C 0.121 3.879 10 C -0.479 4.479 11 H 0.107 0.893 12 C -0.133 4.133 13 N -0.438 5.438 14 Si 0.745 3.255 15 H -0.202 1.202 16 H -0.224 1.224 17 H -0.168 1.168 18 C -0.327 4.327 19 C -0.122 4.122 20 C -0.157 4.157 21 C -0.227 4.227 22 S -0.050 6.050 23 C -0.227 4.227 24 C -0.153 4.153 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.222 0.778 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.101 0.899 40 H 0.122 0.878 41 H 0.096 0.904 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.931 0.732 19.469 19.875 hybrid contribution 1.086 -0.115 -0.484 1.194 sum -2.846 0.617 18.985 19.207 Atomic orbital electron populations 1.22374 0.96497 1.02084 1.01871 1.20643 0.93362 0.96445 0.83813 0.90451 1.44701 1.75342 1.11644 1.07285 1.17494 0.92632 0.91058 0.84505 1.19914 1.21228 0.93336 0.98138 1.20405 0.96697 0.97147 0.93030 1.20876 1.13565 0.94769 0.97424 1.17454 0.88099 0.90919 0.91406 1.19490 1.23348 1.10588 0.94507 0.89262 1.26142 0.96229 0.92985 0.97907 1.69717 1.30166 1.10881 1.33057 0.86220 0.77230 0.80425 0.81628 1.20240 1.22352 1.16806 1.20431 1.19545 0.98760 0.93971 1.21407 1.00974 0.94944 0.94868 1.21822 1.01102 0.94496 0.98304 1.23474 1.03456 1.02321 0.93442 1.86831 1.87317 1.09160 1.21738 1.23445 1.03416 0.93845 1.01980 1.21763 1.01063 1.00259 0.92238 0.92560 0.92516 0.91829 0.77796 0.88955 0.89074 0.88642 0.90670 0.88545 0.90690 0.90061 0.90536 0.89873 0.87811 0.89920 0.87832 0.90434 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 8.76 37.16 0.33 -1.74 16 2 C 0.16 2.13 2.04 -67.93 -0.14 2.00 16 3 H 0.08 1.08 6.47 -51.93 -0.34 0.74 16 4 N -0.76 -12.68 5.15 -52.22 -0.27 -12.95 16 5 C 0.24 5.13 6.63 -83.86 -0.56 4.57 16 6 C -0.30 -6.23 8.86 -39.08 -0.35 -6.57 16 7 C -0.05 -1.15 10.02 -39.69 -0.40 -1.54 16 8 C -0.25 -5.85 9.79 -38.83 -0.38 -6.23 16 9 C 0.12 3.22 5.10 -106.85 -0.55 2.68 16 10 C -0.45 -12.44 9.57 -37.75 -0.36 -12.80 16 11 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 12 C 0.09 2.28 5.40 -17.34 -0.09 2.19 16 13 N -0.81 -22.08 13.93 55.55 0.77 -21.31 16 14 Si 0.92 21.35 24.52 -169.99 -4.17 17.18 16 15 H -0.28 -6.16 6.71 56.52 0.38 -5.78 16 16 H -0.30 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.24 -5.90 6.86 56.52 0.39 -5.51 16 18 C -0.30 -7.32 7.01 -38.68 -0.27 -7.59 16 19 C -0.10 -1.08 1.92 -91.05 -0.17 -1.25 16 20 C -0.12 -1.19 4.33 -26.88 -0.12 -1.31 16 21 C -0.08 -0.75 6.46 37.22 0.24 -0.51 16 22 S -0.28 -2.80 22.33 -107.50 -2.40 -5.20 16 23 C -0.08 -0.66 6.46 37.21 0.24 -0.42 16 24 C -0.11 -0.99 4.38 -26.89 -0.12 -1.11 16 25 H 0.06 0.68 6.68 -51.93 -0.35 0.33 16 26 H 0.06 0.57 6.68 -51.93 -0.35 0.22 16 27 H 0.06 0.91 7.70 -51.93 -0.40 0.51 16 28 H 0.39 6.22 6.70 -40.82 -0.27 5.94 16 29 H 0.09 1.67 6.08 -52.49 -0.32 1.35 16 30 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 32 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 33 H 0.10 2.35 4.73 -52.49 -0.25 2.10 16 34 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.08 0.82 6.93 -51.93 -0.36 0.46 16 36 H 0.08 0.83 6.14 -51.93 -0.32 0.51 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 42 H 0.08 0.71 6.94 -51.93 -0.36 0.35 16 LS Contribution 329.57 15.07 4.97 4.97 Total: -1.00 -28.10 329.57 -10.07 -38.17 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.28 Total: 8.79 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: -2.69 Total: -29.65 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.50 Total: -34.26 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.17 Total: 17.18 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.40 Total: -5.20 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.10 -10.07 -38.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449706023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.303 kcal (2) G-P(sol) polarization free energy of solvation -28.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds