Wall clock time and date at job start Tue Mar 31 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47217 * 2 1 4 4 N 1.46504 * 109.46925 * 240.00059 * 2 1 3 5 5 C 1.39690 * 119.99796 * 84.99770 * 4 2 1 6 6 C 1.39330 * 119.94923 * 0.02562 * 5 4 2 7 7 C 1.38487 * 120.42139 * 179.97438 * 6 5 4 8 8 C 1.37686 * 120.32319 * 0.24907 * 7 6 5 9 9 C 1.40758 * 119.89557 * 359.50045 * 8 7 6 10 10 C 1.41399 * 120.20775 * 180.24982 * 9 8 7 11 11 H 1.07997 * 120.00692 * 330.46001 * 10 9 8 12 12 C 1.39931 * 119.99739 * 150.45491 * 10 9 8 13 13 N 1.30835 * 120.00269 * 161.72262 * 12 10 9 14 14 Si 1.86806 * 119.99959 * 341.72250 * 12 10 9 15 15 H 1.48501 * 109.46666 * 95.41143 * 14 12 10 16 16 H 1.48500 * 109.47098 * 215.40945 * 14 12 10 17 17 H 1.48495 * 109.47082 * 335.41266 * 14 12 10 18 18 C 1.38273 * 119.94916 * 179.97438 * 5 4 2 19 19 C 1.52991 * 109.47222 * 120.00268 * 2 1 3 20 20 C 1.52581 * 109.22835 * 60.59418 * 19 2 1 21 21 C 1.53122 * 109.94601 * 168.96193 * 20 19 2 22 22 S 1.81741 * 108.80814 * 63.09057 * 21 20 19 23 23 C 1.81753 * 102.22088 * 306.71273 * 22 21 20 24 24 C 1.52587 * 109.22724 * 299.39877 * 19 2 1 25 25 H 1.08996 * 109.47217 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46894 * 300.00067 * 1 2 3 27 27 H 1.09003 * 109.47139 * 59.99727 * 1 2 3 28 28 H 0.96994 * 120.00245 * 265.00014 * 4 2 1 29 29 H 1.08001 * 119.79490 * 359.94689 * 6 5 4 30 30 H 1.07992 * 119.83899 * 179.97438 * 7 6 5 31 31 H 1.08000 * 120.05215 * 179.72207 * 8 7 6 32 32 H 0.96997 * 119.99994 * 179.97438 * 13 12 10 33 33 H 1.07999 * 120.16471 * 0.02562 * 18 5 4 34 34 H 1.09004 * 109.22233 * 179.97438 * 19 2 1 35 35 H 1.08998 * 109.39147 * 289.15378 * 20 19 2 36 36 H 1.08999 * 109.38686 * 48.85726 * 20 19 2 37 37 H 1.08992 * 109.60741 * 303.27683 * 21 20 19 38 38 H 1.08999 * 109.67727 * 182.93954 * 21 20 19 39 39 H 1.09005 * 109.57164 * 293.45924 * 23 22 21 40 40 H 1.09002 * 109.68389 * 173.13864 * 23 22 21 41 41 H 1.08994 * 109.39073 * 311.14644 * 24 19 2 42 42 H 1.09003 * 109.38676 * 70.94991 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1517 0.0063 -2.3995 6 6 1.8205 1.3583 -2.4607 7 6 1.9494 2.0588 -3.6483 8 6 2.4018 1.4248 -4.7837 9 6 2.7453 0.0606 -4.7359 10 6 3.2156 -0.5957 -5.8967 11 1 2.8902 -0.2667 -6.8725 12 6 4.1029 -1.6716 -5.7810 13 7 4.2625 -2.4985 -6.7823 14 14 5.0597 -1.9271 -4.1971 15 1 4.3397 -2.8988 -3.3353 16 1 6.4114 -2.4537 -4.5147 17 1 5.1884 -0.6320 -3.4821 18 6 2.6131 -0.6464 -3.5278 19 6 2.0400 -0.7213 1.2491 20 6 1.5406 -2.1630 1.2360 21 6 2.2561 -2.9735 2.3204 22 16 1.8335 -2.2788 3.9458 23 6 2.2551 -0.5234 3.7354 24 6 1.5407 0.0110 2.4912 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2490 -1.6317 -1.1527 29 1 1.4605 1.8631 -1.5764 30 1 1.6896 3.1063 -3.6852 31 1 2.4964 1.9742 -5.7087 32 1 4.8778 -3.2440 -6.7022 33 1 2.8705 -1.6942 -3.4814 34 1 3.1301 -0.7193 1.2448 35 1 0.4669 -2.1757 1.4229 36 1 1.7421 -2.6068 0.2611 37 1 3.3338 -2.9170 2.1680 38 1 1.9346 -4.0139 2.2731 39 1 3.3330 -0.4192 3.6107 40 1 1.9327 0.0392 4.6116 41 1 1.7422 1.0772 2.3882 42 1 0.4672 -0.1460 2.5967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449706023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:35 Heat of formation + Delta-G solvation = -12.520712 kcal Electronic energy + Delta-G solvation = -21201.635660 eV Core-core repulsion = 18270.689631 eV Total energy + Delta-G solvation = -2930.946028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 7.52 seconds Orbital eigenvalues (eV) -40.45917 -39.03870 -36.11132 -35.04158 -32.56585 -32.11777 -32.03472 -28.85960 -27.62806 -26.97202 -24.26435 -23.76431 -23.20430 -21.63220 -20.35562 -19.12686 -18.16383 -17.82142 -17.05026 -16.51453 -16.33403 -15.54736 -15.47450 -15.33592 -14.98952 -14.70965 -14.58598 -14.21887 -14.13611 -13.78100 -13.73331 -13.52065 -13.32631 -13.08535 -12.90698 -12.65329 -12.52374 -12.19626 -12.11858 -11.77620 -11.67347 -11.56491 -11.50040 -11.23850 -10.99755 -10.65830 -10.56497 -9.40892 -8.88308 -8.69248 -8.08356 -6.49172 0.83469 0.90334 1.06958 1.23290 1.44315 1.49100 1.58968 2.13747 2.63435 2.70458 3.53148 3.62521 3.65973 3.83104 4.01721 4.17537 4.24305 4.35929 4.38335 4.41657 4.52335 4.60079 4.67614 4.71921 4.78408 4.83411 4.86767 4.92801 4.99640 5.01912 5.05262 5.10883 5.16136 5.27361 5.32952 5.47731 5.50379 5.75557 5.96787 6.02588 6.21153 6.35235 6.68816 6.88025 6.90507 7.07048 8.21004 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.004339 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.735633 B = 6452.001886 C = 7424.168525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.160 3.840 3 H 0.078 0.922 4 N -0.749 5.749 5 C 0.246 3.754 6 C -0.290 4.290 7 C -0.048 4.048 8 C -0.272 4.272 9 C 0.106 3.894 10 C -0.491 4.491 11 H 0.053 0.947 12 C 0.049 3.951 13 N -0.856 5.856 14 Si 0.975 3.025 15 H -0.261 1.261 16 H -0.283 1.283 17 H -0.257 1.257 18 C -0.319 4.319 19 C -0.094 4.094 20 C -0.115 4.115 21 C -0.073 4.073 22 S -0.307 6.307 23 C -0.070 4.070 24 C -0.109 4.109 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.043 0.957 28 H 0.391 0.609 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.291 0.709 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 2.402 22.475 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 H 0.096 0.904 4 N -0.381 5.381 5 C 0.144 3.856 6 C -0.312 4.312 7 C -0.066 4.066 8 C -0.293 4.293 9 C 0.103 3.897 10 C -0.521 4.521 11 H 0.071 0.929 12 C -0.165 4.165 13 N -0.483 5.483 14 Si 0.799 3.201 15 H -0.186 1.186 16 H -0.210 1.210 17 H -0.181 1.181 18 C -0.343 4.343 19 C -0.113 4.113 20 C -0.154 4.154 21 C -0.221 4.221 22 S -0.082 6.082 23 C -0.218 4.218 24 C -0.148 4.148 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.226 0.774 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.104 0.896 40 H 0.137 0.863 41 H 0.110 0.890 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.486 1.796 23.355 23.849 hybrid contribution 1.105 -0.308 -1.519 1.904 sum -3.381 1.488 21.836 22.146 Atomic orbital electron populations 1.22318 0.95449 1.02291 1.02238 1.20891 0.94037 0.96360 0.83171 0.90414 1.44870 1.74285 1.11926 1.07004 1.17592 0.91158 0.91615 0.85229 1.20362 1.18868 0.93005 0.98987 1.20796 0.94845 0.98898 0.92081 1.21020 1.15185 0.94403 0.98711 1.17605 0.88596 0.91968 0.91568 1.19498 1.25964 1.12718 0.93881 0.92927 1.26800 0.96487 0.92455 1.00739 1.69747 1.31721 1.11969 1.34826 0.85350 0.76602 0.79882 0.78275 1.18622 1.21000 1.18106 1.20467 1.20614 0.98661 0.94570 1.21323 1.00563 0.94998 0.94432 1.21783 1.01277 0.94397 0.97978 1.23432 1.03362 1.02555 0.92715 1.86983 1.87442 1.11271 1.22461 1.23485 1.03612 0.92221 1.02511 1.21730 1.01191 1.00728 0.91138 0.92538 0.89763 0.93794 0.77361 0.85556 0.85454 0.88989 0.89828 0.89194 0.91256 0.89864 0.91466 0.89839 0.87279 0.89617 0.86278 0.89009 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 8.76 71.98 0.63 -2.75 16 2 C 0.16 3.57 2.04 44.99 0.09 3.66 16 3 H 0.08 1.78 6.47 -2.39 -0.02 1.77 16 4 N -0.75 -23.01 5.15 -319.13 -1.64 -24.65 16 5 C 0.25 9.86 6.63 38.16 0.25 10.11 16 6 C -0.29 -10.87 8.86 22.59 0.20 -10.67 16 7 C -0.05 -1.90 10.02 22.20 0.22 -1.68 16 8 C -0.27 -13.05 9.79 22.76 0.22 -12.83 16 9 C 0.11 5.60 5.10 -21.31 -0.11 5.49 16 10 C -0.49 -28.73 9.57 23.46 0.22 -28.50 16 11 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 12 C 0.05 2.71 5.40 85.25 0.46 3.17 16 13 N -0.86 -48.55 13.93 21.82 0.30 -48.24 16 14 Si 0.97 44.70 24.52 68.60 1.68 46.38 16 15 H -0.26 -11.15 6.71 99.48 0.67 -10.48 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 17 H -0.26 -12.16 6.86 99.48 0.68 -11.48 16 18 C -0.32 -15.30 7.01 22.86 0.16 -15.14 16 19 C -0.09 -1.63 1.92 -11.07 -0.02 -1.65 16 20 C -0.12 -2.01 4.33 30.50 0.13 -1.88 16 21 C -0.07 -1.21 6.46 72.02 0.47 -0.74 16 22 S -0.31 -5.46 22.33 -56.49 -1.26 -6.72 16 23 C -0.07 -0.93 6.46 72.01 0.46 -0.46 16 24 C -0.11 -1.42 4.38 30.49 0.13 -1.29 16 25 H 0.06 1.17 6.68 -2.39 -0.02 1.15 16 26 H 0.08 1.29 6.68 -2.39 -0.02 1.27 16 27 H 0.04 1.09 7.70 -2.39 -0.02 1.07 16 28 H 0.39 11.62 6.70 -92.71 -0.62 11.00 16 29 H 0.13 3.91 6.08 -2.91 -0.02 3.90 16 30 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 31 H 0.09 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.29 14.85 8.30 -92.71 -0.77 14.08 16 33 H 0.09 4.36 4.73 -2.91 -0.01 4.35 16 34 H 0.07 1.33 8.08 -2.38 -0.02 1.31 16 35 H 0.08 1.43 6.93 -2.39 -0.02 1.42 16 36 H 0.07 1.31 6.14 -2.39 -0.01 1.29 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 42 H 0.08 1.09 6.94 -2.39 -0.02 1.08 16 Total: -1.00 -63.09 329.57 2.95 -60.14 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.33 Total: 28.26 kcal Atomic # 6 Polarization: -58.70 SS G_CDS: 3.53 Total: -55.16 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -1.34 Total: -72.90 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.68 Total: 46.38 kcal Atomic # 16 Polarization: -5.46 SS G_CDS: -1.26 Total: -6.72 kcal Total: -63.09 2.95 -60.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449706023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.621 kcal (2) G-P(sol) polarization free energy of solvation -63.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.52 seconds