Wall clock time and date at job start Tue Mar 31 2020 08:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47046 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46873 * 299.99705 * 3 2 1 6 6 H 1.48497 * 109.47510 * 59.99740 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47036 * 179.97438 * 10 9 7 12 12 C 1.35901 * 117.00221 * 180.02562 * 11 10 9 13 13 C 1.38758 * 120.05278 * 359.71834 * 12 11 10 14 14 C 1.38118 * 119.94459 * 179.70225 * 13 12 11 15 15 C 1.38288 * 120.05741 * 0.59838 * 14 13 12 16 16 C 1.38248 * 120.10611 * 359.67970 * 15 14 13 17 17 C 1.50710 * 119.96907 * 179.97438 * 16 15 14 18 18 N 1.46894 * 109.46934 * 270.02137 * 17 16 15 19 19 C 1.46895 * 110.99932 * 180.02562 * 18 17 16 20 20 H 1.09006 * 112.84996 * 334.66741 * 19 18 17 21 21 C 1.53781 * 113.61607 * 105.86246 * 19 18 17 22 22 C 1.53960 * 87.01782 * 139.95330 * 21 19 18 23 23 H 1.09003 * 113.53445 * 89.19640 * 22 21 19 24 24 O 1.42902 * 113.74241 * 220.05379 * 22 21 19 25 25 C 1.53768 * 87.11204 * 334.63843 * 22 21 19 26 26 C 1.38165 * 120.05851 * 0.02562 * 16 15 14 27 27 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 29 29 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 30 30 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 31 31 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 32 32 H 1.08004 * 120.02895 * 359.97438 * 13 12 11 33 33 H 1.08001 * 119.97502 * 180.30380 * 14 13 12 34 34 H 1.07995 * 119.95092 * 179.70465 * 15 14 13 35 35 H 1.08999 * 109.46827 * 30.02319 * 17 16 15 36 36 H 1.08997 * 109.46412 * 150.02323 * 17 16 15 37 37 H 1.00898 * 111.00516 * 303.95740 * 18 17 16 38 38 H 1.08999 * 113.61347 * 254.52893 * 21 19 18 39 39 H 1.08993 * 113.61645 * 25.43747 * 21 19 18 40 40 H 0.96703 * 114.00273 * 277.60268 * 24 22 21 41 41 H 1.09002 * 113.61900 * 270.80941 * 25 22 21 42 42 H 1.09008 * 113.69195 * 139.91898 * 25 22 21 43 43 H 1.08001 * 120.02861 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5308 -4.8996 0.0011 12 6 2.2709 -6.0394 0.0018 13 6 3.6566 -5.9682 -0.0041 14 6 4.4066 -7.1279 0.0027 15 6 3.7777 -8.3595 0.0030 16 6 2.3972 -8.4332 0.0030 17 6 1.7150 -9.7770 0.0027 18 7 1.4937 -10.2134 -1.3824 19 6 0.8285 -11.5225 -1.4220 20 1 1.0086 -12.1161 -0.5256 21 6 -0.6540 -11.4483 -1.8240 22 6 -0.4095 -12.7216 -2.6543 23 1 -0.5693 -13.6433 -2.0948 24 8 -1.0721 -12.7190 -3.9204 25 6 1.0659 -12.2950 -2.7303 26 6 1.6424 -7.2759 0.0023 27 1 -0.4849 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8719 -3.6044 -0.8895 31 1 2.8719 -3.6043 0.8905 32 1 4.1484 -5.0066 -0.0096 33 1 5.4853 -7.0730 0.0031 34 1 4.3658 -9.2653 0.0035 35 1 2.3439 -10.5039 0.5166 36 1 0.7568 -9.6980 0.5162 37 1 0.9672 -9.5249 -1.8988 38 1 -1.3404 -11.5948 -0.9901 39 1 -0.8996 -10.5743 -2.4272 40 1 -2.0005 -12.9864 -3.8790 41 1 1.2915 -11.6529 -3.5817 42 1 1.7672 -13.1232 -2.6272 43 1 0.5640 -7.3340 0.0027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449750807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:35 Heat of formation + Delta-G solvation = -53.744299 kcal Electronic energy + Delta-G solvation = -21820.490949 eV Core-core repulsion = 18445.004461 eV Total energy + Delta-G solvation = -3375.486488 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -39.99874 -39.58861 -37.48615 -35.99657 -33.86745 -33.35568 -30.93035 -30.39415 -29.12429 -26.06169 -25.84282 -24.86137 -23.15727 -22.25573 -21.70526 -20.38595 -19.88417 -17.96596 -17.62020 -16.31873 -16.04436 -15.70848 -15.62871 -15.52614 -15.28018 -14.90008 -14.48120 -14.28618 -13.78395 -13.29826 -13.13314 -12.81829 -12.76794 -12.56933 -12.36979 -12.23262 -11.81673 -11.40526 -11.37536 -11.33516 -11.22875 -10.96624 -10.87748 -10.69470 -10.45930 -10.17575 -9.86459 -9.66656 -9.29559 -8.82371 -8.54239 -8.46183 -7.83517 -6.11545 -4.16094 1.43140 1.69975 3.25859 3.32928 3.36598 3.61699 3.82475 3.95596 4.16457 4.24482 4.33287 4.40378 4.51151 4.61276 4.77176 4.98134 5.00535 5.19628 5.25014 5.29896 5.33489 5.43008 5.44857 5.50477 5.64301 5.65951 5.70151 5.82650 5.87762 6.02940 6.06178 6.18138 6.54638 6.56136 6.69720 6.72752 6.77825 6.99254 7.11359 7.28005 7.49835 7.62779 7.80618 8.05587 8.22858 8.89727 9.48351 11.00115 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023262 B = 0.002362 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.381764 B =11849.849870 C =12718.188344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.317 6.317 12 C 0.145 3.855 13 C -0.210 4.210 14 C -0.081 4.081 15 C -0.149 4.149 16 C -0.053 4.053 17 C 0.102 3.898 18 N -0.671 5.671 19 C 0.069 3.931 20 H 0.099 0.901 21 C -0.200 4.200 22 C 0.075 3.925 23 H 0.080 0.920 24 O -0.559 6.559 25 C -0.118 4.118 26 C -0.157 4.157 27 H 0.263 0.737 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.349 0.651 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.377 0.623 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.888 -25.927 -1.428 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.230 6.230 12 C 0.098 3.902 13 C -0.229 4.229 14 C -0.100 4.100 15 C -0.168 4.168 16 C -0.053 4.053 17 C -0.026 4.026 18 N -0.301 5.301 19 C -0.042 4.042 20 H 0.117 0.883 21 C -0.240 4.240 22 C 0.015 3.985 23 H 0.098 0.902 24 O -0.364 6.364 25 C -0.156 4.156 26 C -0.176 4.176 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.147 0.853 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.169 0.831 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.224 0.776 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.751 -25.821 -1.690 26.022 hybrid contribution -0.821 1.181 0.499 1.522 sum 1.930 -24.640 -1.191 24.744 Atomic orbital electron populations 1.69987 1.06109 1.26869 1.49817 1.24998 0.94916 0.99423 0.94918 0.86427 0.79986 0.83226 0.77724 1.19629 1.20821 1.20832 1.21010 0.93090 0.90193 1.52083 0.92299 1.19132 0.94186 0.89061 0.98848 1.23327 0.97069 0.80810 0.99661 1.86166 1.36587 1.13225 1.87017 1.19145 0.90126 0.87444 0.93501 1.21403 0.93206 0.99881 1.08387 1.20902 0.99447 0.91951 0.97664 1.20761 0.93685 0.97388 1.04920 1.19393 0.93626 0.93291 0.99039 1.20879 0.98613 0.93427 0.89696 1.60428 1.52764 1.03819 1.13108 1.22769 0.91467 0.91850 0.98100 0.88250 1.24474 0.98566 1.00294 1.00651 1.23244 0.94491 0.96140 0.84576 0.90174 1.86550 1.28301 1.91303 1.30239 1.23173 0.93891 0.99897 0.98622 1.20267 0.99956 0.89554 1.07816 0.92755 0.95411 0.95418 0.93111 0.93145 0.85269 0.86155 0.86347 0.90094 0.94148 0.83135 0.91307 0.88892 0.77623 0.88670 0.90737 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 10 C 0.07 1.41 4.68 37.16 0.17 1.59 16 11 O -0.32 -6.58 10.14 -19.43 -0.20 -6.78 16 12 C 0.14 2.54 6.69 -39.22 -0.26 2.28 16 13 C -0.21 -3.32 9.04 -39.43 -0.36 -3.67 16 14 C -0.08 -1.08 10.04 -39.61 -0.40 -1.48 16 15 C -0.15 -1.85 9.70 -39.56 -0.38 -2.23 16 16 C -0.05 -0.67 5.39 -104.64 -0.56 -1.23 16 17 C 0.10 1.00 5.66 -4.97 -0.03 0.97 16 18 N -0.67 -6.40 6.60 -107.13 -0.71 -7.10 16 19 C 0.07 0.53 4.16 -66.90 -0.28 0.25 16 20 H 0.10 0.65 7.88 -51.93 -0.41 0.24 16 21 C -0.20 -1.45 7.55 -25.82 -0.20 -1.64 16 22 C 0.08 0.53 5.21 -25.83 -0.13 0.39 16 23 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 24 O -0.56 -4.57 13.68 -35.23 -0.48 -5.05 16 25 C -0.12 -0.94 7.71 -25.93 -0.20 -1.13 16 26 C -0.16 -2.35 9.64 -39.44 -0.38 -2.73 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 31 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 32 H 0.13 2.02 6.30 -52.48 -0.33 1.68 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 36 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 37 H 0.35 3.54 8.20 -39.29 -0.32 3.22 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.79 7.83 -51.93 -0.41 0.38 16 40 H 0.38 1.47 9.12 45.56 0.42 1.88 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 43 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -31.62 359.83 -9.85 -41.47 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.03 Total: 3.10 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -3.57 Total: -21.56 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.03 Total: -32.90 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.68 Total: -11.83 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.62 -9.85 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449750807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.273 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds