Wall clock time and date at job start Tue Mar 31 2020 08:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47046 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46873 * 299.99705 * 3 2 1 6 6 H 1.48497 * 109.47510 * 59.99740 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47036 * 179.97438 * 10 9 7 12 12 C 1.35901 * 117.00221 * 180.02562 * 11 10 9 13 13 C 1.38758 * 120.05278 * 359.71834 * 12 11 10 14 14 C 1.38118 * 119.94459 * 179.70225 * 13 12 11 15 15 C 1.38288 * 120.05741 * 0.59838 * 14 13 12 16 16 C 1.38248 * 120.10611 * 359.67970 * 15 14 13 17 17 C 1.50710 * 119.96907 * 179.97438 * 16 15 14 18 18 N 1.46894 * 109.46934 * 270.02137 * 17 16 15 19 19 C 1.46895 * 110.99932 * 180.02562 * 18 17 16 20 20 H 1.09006 * 112.84996 * 334.66741 * 19 18 17 21 21 C 1.53781 * 113.61607 * 105.86246 * 19 18 17 22 22 C 1.53960 * 87.01782 * 139.95330 * 21 19 18 23 23 H 1.09003 * 113.53445 * 89.19640 * 22 21 19 24 24 O 1.42902 * 113.74241 * 220.05379 * 22 21 19 25 25 C 1.53768 * 87.11204 * 334.63843 * 22 21 19 26 26 C 1.38165 * 120.05851 * 0.02562 * 16 15 14 27 27 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 29 29 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 30 30 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 31 31 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 32 32 H 1.08004 * 120.02895 * 359.97438 * 13 12 11 33 33 H 1.08001 * 119.97502 * 180.30380 * 14 13 12 34 34 H 1.07995 * 119.95092 * 179.70465 * 15 14 13 35 35 H 1.08999 * 109.46827 * 30.02319 * 17 16 15 36 36 H 1.08997 * 109.46412 * 150.02323 * 17 16 15 37 37 H 1.00898 * 111.00516 * 303.95740 * 18 17 16 38 38 H 1.08999 * 113.61347 * 254.52893 * 21 19 18 39 39 H 1.08993 * 113.61645 * 25.43747 * 21 19 18 40 40 H 0.96703 * 114.00273 * 277.60268 * 24 22 21 41 41 H 1.09002 * 113.61900 * 270.80941 * 25 22 21 42 42 H 1.09008 * 113.69195 * 139.91898 * 25 22 21 43 43 H 1.08001 * 120.02861 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5308 -4.8996 0.0011 12 6 2.2709 -6.0394 0.0018 13 6 3.6566 -5.9682 -0.0041 14 6 4.4066 -7.1279 0.0027 15 6 3.7777 -8.3595 0.0030 16 6 2.3972 -8.4332 0.0030 17 6 1.7150 -9.7770 0.0027 18 7 1.4937 -10.2134 -1.3824 19 6 0.8285 -11.5225 -1.4220 20 1 1.0086 -12.1161 -0.5256 21 6 -0.6540 -11.4483 -1.8240 22 6 -0.4095 -12.7216 -2.6543 23 1 -0.5693 -13.6433 -2.0948 24 8 -1.0721 -12.7190 -3.9204 25 6 1.0659 -12.2950 -2.7303 26 6 1.6424 -7.2759 0.0023 27 1 -0.4849 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8719 -3.6044 -0.8895 31 1 2.8719 -3.6043 0.8905 32 1 4.1484 -5.0066 -0.0096 33 1 5.4853 -7.0730 0.0031 34 1 4.3658 -9.2653 0.0035 35 1 2.3439 -10.5039 0.5166 36 1 0.7568 -9.6980 0.5162 37 1 0.9672 -9.5249 -1.8988 38 1 -1.3404 -11.5948 -0.9901 39 1 -0.8996 -10.5743 -2.4272 40 1 -2.0005 -12.9864 -3.8790 41 1 1.2915 -11.6529 -3.5817 42 1 1.7672 -13.1232 -2.6272 43 1 0.5640 -7.3340 0.0027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449750807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:34 Heat of formation + Delta-G solvation = -75.839476 kcal Electronic energy + Delta-G solvation = -21821.449068 eV Core-core repulsion = 18445.004461 eV Total energy + Delta-G solvation = -3376.444607 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.11272 -40.35288 -38.74489 -36.70923 -35.50028 -34.60154 -32.59601 -31.54233 -30.51360 -27.17705 -26.64132 -26.37683 -23.93458 -23.34930 -23.31826 -21.62776 -20.65345 -19.10711 -18.52997 -18.15001 -17.06048 -16.95742 -16.87173 -16.65212 -16.37544 -16.16904 -15.65016 -15.29401 -14.56308 -14.36792 -14.35107 -14.31176 -14.02069 -13.73562 -13.42653 -13.18490 -13.00361 -12.98761 -12.63737 -12.55346 -12.40523 -12.29542 -11.97086 -11.81850 -11.62040 -11.56696 -11.48699 -11.37477 -10.73357 -10.64525 -9.85901 -9.30080 -9.09496 -8.28491 -6.42213 0.33604 0.54270 1.40030 1.41043 1.54603 2.25891 2.49971 2.73981 3.05981 3.18242 3.57832 3.64679 3.72013 3.86021 3.90473 3.97666 4.05385 4.17002 4.22428 4.24864 4.37749 4.46138 4.49928 4.57365 4.67798 4.72052 4.79367 4.80012 4.82599 5.05220 5.11020 5.14596 5.27473 5.30020 5.42634 5.44473 5.52713 5.64506 5.67441 5.90201 6.05866 6.11917 6.32861 6.56229 6.72733 6.91335 7.28042 8.84957 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023262 B = 0.002362 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.381764 B =11849.849870 C =12718.188344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.085 3.915 11 O -0.343 6.343 12 C 0.105 3.895 13 C -0.223 4.223 14 C -0.080 4.080 15 C -0.140 4.140 16 C -0.047 4.047 17 C 0.107 3.893 18 N -0.679 5.679 19 C 0.072 3.928 20 H 0.119 0.881 21 C -0.198 4.198 22 C 0.078 3.922 23 H 0.105 0.895 24 O -0.583 6.583 25 C -0.124 4.124 26 C -0.165 4.165 27 H 0.267 0.733 28 H -0.002 1.002 29 H -0.002 1.002 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.045 0.955 37 H 0.342 0.658 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.394 0.606 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.796 -27.734 -0.962 28.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.089 0.911 9 C -0.009 4.009 10 C 0.011 3.989 11 O -0.258 6.258 12 C 0.060 3.940 13 C -0.242 4.242 14 C -0.097 4.097 15 C -0.158 4.158 16 C -0.047 4.047 17 C -0.021 4.021 18 N -0.309 5.309 19 C -0.038 4.038 20 H 0.137 0.863 21 C -0.238 4.238 22 C 0.019 3.981 23 H 0.123 0.877 24 O -0.391 6.391 25 C -0.162 4.162 26 C -0.184 4.184 27 H 0.076 0.924 28 H 0.016 0.984 29 H 0.017 0.983 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.168 0.832 34 H 0.167 0.833 35 H 0.120 0.880 36 H 0.063 0.937 37 H 0.160 0.840 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.243 0.757 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.659 -27.667 -1.224 28.083 hybrid contribution -1.438 1.561 0.330 2.147 sum 3.221 -26.107 -0.895 26.320 Atomic orbital electron populations 1.70128 1.08060 1.28195 1.50677 1.26061 0.95851 1.03750 0.94145 0.85220 0.79033 0.77788 0.77910 1.18121 1.20209 1.20159 1.21422 0.93822 0.90991 1.52047 0.91128 1.18972 0.94552 0.91436 0.95962 1.22844 0.95377 0.80270 1.00408 1.86074 1.37521 1.13797 1.88361 1.19497 0.91112 0.86837 0.96561 1.21505 0.92596 1.00953 1.09129 1.21255 1.00867 0.91260 0.96363 1.21189 0.93752 0.98233 1.02663 1.19726 0.93993 0.93727 0.97300 1.20905 0.98996 0.92143 0.90095 1.60445 1.53231 1.04432 1.12781 1.22856 0.91332 0.90959 0.98655 0.86316 1.24405 0.98681 0.99888 1.00823 1.23341 0.93570 0.96896 0.84284 0.87694 1.86503 1.29902 1.91553 1.31120 1.23179 0.95091 0.99977 0.97956 1.20443 1.00313 0.89603 1.08066 0.92415 0.98399 0.98319 0.92337 0.92234 0.85650 0.83218 0.83294 0.88008 0.93697 0.83955 0.90222 0.90721 0.75665 0.90996 0.89673 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.98 43.81 29.54 68.60 2.03 45.83 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.55 -31.13 9.11 25.60 0.23 -30.89 16 8 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 9 C 0.03 1.56 5.34 29.85 0.16 1.72 16 10 C 0.09 3.83 4.68 71.98 0.34 4.17 16 11 O -0.34 -14.97 10.14 -92.44 -0.94 -15.91 16 12 C 0.11 3.77 6.69 22.51 0.15 3.92 16 13 C -0.22 -6.96 9.04 22.37 0.20 -6.76 16 14 C -0.08 -1.92 10.04 22.25 0.22 -1.70 16 15 C -0.14 -3.04 9.70 22.28 0.22 -2.83 16 16 C -0.05 -1.10 5.39 -19.88 -0.11 -1.20 16 17 C 0.11 1.81 5.66 85.56 0.48 2.29 16 18 N -0.68 -11.77 6.60 -492.86 -3.25 -15.02 16 19 C 0.07 0.95 4.16 45.44 0.19 1.14 16 20 H 0.12 1.13 7.88 -2.38 -0.02 1.11 16 21 C -0.20 -2.60 7.55 31.18 0.24 -2.36 16 22 C 0.08 0.96 5.21 31.18 0.16 1.12 16 23 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 24 O -0.58 -8.93 13.68 -148.98 -2.04 -10.97 16 25 C -0.12 -1.79 7.71 31.12 0.24 -1.55 16 26 C -0.16 -4.96 9.64 22.36 0.22 -4.75 16 27 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.00 -0.15 8.14 -2.39 -0.02 -0.16 16 29 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.06 2.49 7.65 -2.39 -0.02 2.47 16 31 H 0.06 2.52 7.67 -2.39 -0.02 2.50 16 32 H 0.13 3.91 6.30 -2.91 -0.02 3.89 16 33 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 34 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.10 1.35 8.07 -2.39 -0.02 1.33 16 36 H 0.04 0.74 8.08 -2.39 -0.02 0.72 16 37 H 0.34 6.77 8.20 -89.70 -0.74 6.04 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 1.26 7.83 -2.39 -0.02 1.24 16 40 H 0.39 2.59 9.12 -74.06 -0.68 1.92 16 41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -70.36 359.83 -0.91 -71.27 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -0.40 Total: 18.82 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 3.40 Total: -37.19 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -2.97 Total: -71.85 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -2.97 Total: -26.88 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -70.36 -0.91 -71.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449750807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.570 kcal (2) G-P(sol) polarization free energy of solvation -70.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds